mRNA_H-paniculata_contig504.12296.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig504.12296.1
Unique NamemRNA_H-paniculata_contig504.12296.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: D7FVT0_ECTSI (Thioredox_DsbH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT0_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 5.760e-119
Identity = 170/204 (83.33%), Postives = 183/204 (89.71%), Query Frame = 2 
Query:  233 NRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEQRFIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSREAVREGFSVLDKGHDDDLGGWSGGR 844
            NRL  ETSPYLLQHAHNPVDWMPWG+EAF +A+EEDKPIFLSVGYSTCHWCHVMERESFES+ VAKVLN  FVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPE RF+ +L TLAD WS++REEV+KQG+HI+RLLQERL+  AA  GDP  FL+L KSREAVREG  VLDKGHDD LGGW GGR
Sbjct:   24 NRLAEETSPYLLQHAHNPVDWMPWGQEAFSRAKEEDKPIFLSVGYSTCHWCHVMERESFESQTVAKVLNENFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEMRFVSILKTLADKWSSDREEVVKQGDHIVRLLQERLSETAAASGDPLAFLALDKSREAVREGVRVLDKGHDDVLGGWGGGR 227
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BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: A0A838Q7E1_9BACT (Thioredoxin domain-containing protein n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A838Q7E1_9BACT)

HSP 1 Score: 246 bits (628), Expect = 5.690e-79
Identity = 111/169 (65.68%), Postives = 133/169 (78.70%), Query Frame = 2 
Query:  197 TRTTGAVGKPGSNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEQR------FIRVLDTLADNWSTNREEVIKQGNHI 685
            +R  GA  +  +NRLI E SPYLLQHAHNPVDW PWGEEAF KAR+E+KPIFLSVGYSTCHWCHVME ESFE+  +A+++N  FVSIKVDREERPDVDQ +MTFVQAT+GGGGWPMSVWLTP+LKPFVG TYFP +       F  VL  +A+ W  +RE+++   + +
Sbjct:   24 SRVAGAAEEKYTNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKARKENKPIFLSVGYSTCHWCHVMEHESFENPEIAQMMNDNFVSIKVDREERPDVDQVYMTFVQATTGGGGWPMSVWLTPELKPFVGGTYFPPENQGGQPGFKSVLKQIAEAWKKDREKIVTSSDRL 192
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: UPI001CB7EEBA (spermatogenesis-associated protein 20 isoform X4 n=1 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB7EEBA)

HSP 1 Score: 262 bits (669), Expect = 2.750e-78
Identity = 127/215 (59.07%), Postives = 152/215 (70.70%), Query Frame = 2 
Query:  209 GAVGKPGSNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEQR------FIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSREAVREGFSVLDKGHDDDLGGWS 835
            G   K  +NRLI E SPYLLQHAHNPVDW PWGEEAF KA++EDKPIFLSVGYSTCHWCHVMERESFE+E + K++N  FV IKVDREERPDVD+ +MTFVQATSGGGGWPMSVWLTPDLKPFVG TYFP +       F  VL+ LA+ W  NR+E+ ++ N I+  LQ+ +   A     P      P     ++  F  L   ++D+ GG+S
Sbjct:   73 GPKTKRHTNRLIHEKSPYLLQHAHNPVDWYPWGEEAFAKAKKEDKPIFLSVGYSTCHWCHVMERESFENEEIGKIMNENFVCIKVDREERPDVDKVYMTFVQATSGGGGWPMSVWLTPDLKPFVGGTYFPPEDGFHRLGFKTVLNNLAEQWKRNRKELTERSNKILTALQKGVEVSANKEAVP------PSCARVMQRCFQQLVHSYEDEYGGFS 281
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: A0A2V6JJJ2_9BACT (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V6JJJ2_9BACT)

HSP 1 Score: 245 bits (625), Expect = 4.120e-78
Identity = 116/207 (56.04%), Postives = 146/207 (70.53%), Query Frame = 2 
Query:  230 SNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEQ------RFIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSREAVREGFSVLDKGHDDDLGGW 832
            +N+L  E SPYLLQHAHNPVDW PWGEEAF KAR E+KPIFLS+GYSTCHWCHVM  ESFE EA A ++N +FV+IKVDREERPDVD+ +MTFVQAT+GGGGWPMSVWLTPDLKPFVG TYFP +       F +VL+ +A +W  + E++ +QG+ I+  L+E      +    PE    +    +  +  +  L +  DD  GG+
Sbjct:   13 TNQLAREKSPYLLQHAHNPVDWYPWGEEAFAKARRENKPIFLSIGYSTCHWCHVMAHESFEDEATAAIMNREFVNIKVDREERPDVDRVYMTFVQATTGGGGWPMSVWLTPDLKPFVGGTYFPTEDRYGQPAFKKVLERIAASWKQDHEKIAEQGSKIVEALRE------SQDAQPEAPTKI--DTQLFQTAYEQLSRSFDDKEGGF 211
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: A0A838Q3N6_9BACT (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A838Q3N6_9BACT)

HSP 1 Score: 246 bits (628), Expect = 4.550e-78
Identity = 122/203 (60.10%), Postives = 143/203 (70.44%), Query Frame = 2 
Query:  233 NRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFP-EQR-----FIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTI--AATGGDP----ETFLSLPKSREAVREGFSVLDK 805
            NRL  E SPYLLQHA NPVDWMPW EEAF KAR E+KPIFLS+GYSTCHWCHVM  ESFE EA A+++N +FV+IKVDREERPDVD+ +MTFVQAT+GGGGWPMSVWLTPDLKPFVG TYFP E R     F RVL  +A  W  +RE++ +QG  I+  L E       AA G +P      +  + +S +A   GF    K
Sbjct:   15 NRLAHEKSPYLLQHAENPVDWMPWDEEAFAKARTENKPIFLSIGYSTCHWCHVMAHESFEDEATAEIMNREFVNIKVDREERPDVDRVYMTFVQATTGGGGWPMSVWLTPDLKPFVGGTYFPPEDRYGHPGFKRVLQRIAAAWKQDREKIAEQGTRIVEALSEAAAGAGGAAEGVEPGVIEAAYRQIARSYDAEEGGFGSAPK 217
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: A0A2V5R301_9BACT (Thioredox_DsbH domain-containing protein (Fragment) n=2 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5R301_9BACT)

HSP 1 Score: 245 bits (625), Expect = 5.180e-78
Identity = 114/164 (69.51%), Postives = 132/164 (80.49%), Query Frame = 2 
Query:  230 SNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFP-EQR-----FIRVLDTLADNWSTNREEVIKQGNHIIRLLQE 703
            +NRL  E SPYLLQHAHNPVDW PWGEEAF KAR E+KPIFLSVGYSTCHWCHVM  ESFESE VA ++N +FV+IKVDREERPDVD+ +MTFVQAT+GGGGWPMSVWLTPDLKPFVG TYFP E R     F +VL+ +A  W  N   +++QG+ I+  L+E
Sbjct:   33 TNRLAHEKSPYLLQHAHNPVDWYPWGEEAFGKARRENKPIFLSVGYSTCHWCHVMAHESFESEDVATIMNREFVNIKVDREERPDVDRVYMTFVQATTGGGGWPMSVWLTPDLKPFVGGTYFPPEDRYGQPGFKKVLERVATAWKENHANIVEQGDKIVDALRE 196
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: UPI001B7EDD92 (spermatogenesis-associated protein 20 isoform X1 n=3 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7EDD92)

HSP 1 Score: 261 bits (667), Expect = 5.190e-78
Identity = 130/219 (59.36%), Postives = 154/219 (70.32%), Query Frame = 2 
Query:  200 RTTGAVGKPG--SNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEQR------FIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSREAVREGFSVLDKGHDDDLGGW 832
            R +G   KP   +NRLI E SPYLLQHAHNPVDW PWGEEAF KA+EEDKPIFLSVGYSTCHWCHVMERESFE+E + K++N  FV IKVDREERPDVD+ +MTFVQATSGGGGWPMSVWLTPDLKPFVG TYFP +       F  VL  LA+ W  NR E+ ++ + I+  LQ+ +    A G + E     P   + +   F  L   +DD+ GG+
Sbjct:   66 RLSGPKPKPKQHTNRLIHEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPIFLSVGYSTCHWCHVMERESFENEEIGKIMNENFVCIKVDREERPDVDKVYMTFVQATSGGGGWPMSVWLTPDLKPFVGGTYFPPEDGFHRVGFKTVLKNLAEQWKRNRSELTERSSKILAALQKGV----AVGANKEAMP--PPCPQVMERCFQQLAHSYDDEYGGF 278
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: A0A2V5WS03_9BACT (Thioredox_DsbH domain-containing protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5WS03_9BACT)

HSP 1 Score: 244 bits (623), Expect = 1.760e-77
Identity = 119/199 (59.80%), Postives = 141/199 (70.85%), Query Frame = 2 
Query:  230 SNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFP-EQR-----FIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSREAVREGFSVLDKG 808
            +NRL  E SPYLLQH+HNPVDW PWGEEAF KAR EDKPIFLS+GYSTCHWCHVM  ESFE+E VA  +N +FV+IKVDREERPDVD+ +MTFVQAT+GGGGWPMSVWLTPDLKPFVG TYFP E R     F +VL+ +A  W  + E++  QG  I+  L+E  T   A     +  + L  + E +   F   D G
Sbjct:   33 TNRLAQEKSPYLLQHSHNPVDWYPWGEEAFAKARREDKPIFLSIGYSTCHWCHVMAHESFENEEVAATMNREFVNIKVDREERPDVDRVYMTFVQATTGGGGWPMSVWLTPDLKPFVGGTYFPPEDRYGQPGFKKVLERIAAAWKQDHEKIAGQGARIVEALREAQTAQPAAAEKIDAKI-LSAAYEQLSRSFDARDGG 230
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: A0A2V5VCQ8_9BACT (Thioredoxin domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5VCQ8_9BACT)

HSP 1 Score: 246 bits (629), Expect = 3.100e-77
Identity = 121/199 (60.80%), Postives = 143/199 (71.86%), Query Frame = 2 
Query:  230 SNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFP-EQR-----FIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSREAVREGFSVLDKG 808
            +NRL  E SPYLLQHAHNPVDW PWGEEAF KAR E+KPIFLS+GYSTCHWCHVM  ESFESE VA ++N +FV+IKVDREERPDVD+ +MTFVQAT+GGGGWPM+VWLTPDLKPFVG TYFP E R     F +VLD +A  W  + E++  QG  II  L+E  T  ++     +T + L  + E     F   D G
Sbjct:   21 TNRLAREKSPYLLQHAHNPVDWYPWGEEAFAKARRENKPIFLSIGYSTCHWCHVMAHESFESEEVAAIMNREFVNIKVDREERPDVDRVYMTFVQATTGGGGWPMNVWLTPDLKPFVGGTYFPPEDRHGQPGFTKVLDRIAAAWKQDHEKIAGQGTKIIDALREAQTAKSSVVETIDTKI-LDAAYEQFSRSFDARDGG 218
[Close]
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Match: A0A838TKB3_9BACT (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A838TKB3_9BACT)

HSP 1 Score: 249 bits (635), Expect = 4.580e-77
Identity = 119/205 (58.05%), Postives = 146/205 (71.22%), Query Frame = 2 
Query:  209 GAVGKPGSNRLIGETSPYLLQHAHNPVDWMPWGEEAFRKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDREERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEQR------FIRVLDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSREAVREGFSVLDK 805
            GA  +  +NRLI E SPYLLQHAHNPVDW PWG+EAF KA++E+KPIFLSVGYSTCHWCHVME ESFE+  +AK++N  FVSIKVDREERPDVDQ +MTFVQAT+GGGGWPMSVWLTPDLKPFVG TYFP +       F  VL  +A+ W  +RE+++   + I+  LQ     I+  G      L     R+A  +  ++ D+
Sbjct:   28 GAAEEKYTNRLINEKSPYLLQHAHNPVDWYPWGKEAFEKAKKENKPIFLSVGYSTCHWCHVMEHESFENPEIAKMMNDNFVSIKVDREERPDVDQVYMTFVQATTGGGGWPMSVWLTPDLKPFVGGTYFPPENRGGQPGFKSVLKQIAEAWKKDREKIVTSSDRIVAELQR----ISEPGKGAPDKLEQGIRRKAYEQFAAIFDE 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig504.12296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT0_ECTSI5.760e-11983.33Thioredox_DsbH domain-containing protein n=2 Tax=E... [more]
A0A838Q7E1_9BACT5.690e-7965.68Thioredoxin domain-containing protein n=1 Tax=Chth... [more]
UPI001CB7EEBA2.750e-7859.07spermatogenesis-associated protein 20 isoform X4 n... [more]
A0A2V6JJJ2_9BACT4.120e-7856.04Thioredoxin domain-containing protein (Fragment) n... [more]
A0A838Q3N6_9BACT4.550e-7860.10Thioredoxin domain-containing protein (Fragment) n... [more]
A0A2V5R301_9BACT5.180e-7869.51Thioredox_DsbH domain-containing protein (Fragment... [more]
UPI001B7EDD925.190e-7859.36spermatogenesis-associated protein 20 isoform X1 n... [more]
A0A2V5WS03_9BACT1.760e-7759.80Thioredox_DsbH domain-containing protein (Fragment... [more]
A0A2V5VCQ8_9BACT3.100e-7760.80Thioredoxin domain-containing protein n=1 Tax=Verr... [more]
A0A838TKB3_9BACT4.580e-7758.05Thioredoxin domain-containing protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig504contigH-paniculata_contig504:27474..30982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score370.2
Seed ortholog evalue8.6e-100
Seed eggNOG ortholog2880.D7FVT0
Preferred nameSPATA20
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0007276,GO:0007283,GO:0008150,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0044703,GO:0048232,GO:0048609,GO:0051704
EggNOG free text desc.spermatogenesis
EggNOG OGsCOG1331@1,KOG2244@2759
Ec32 ortholog descriptionSix-hairpin glycosidase
Ec32 orthologEc-01_002020.1
EC2.7.4.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons4
Model size845
Cds size825
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig504.12296.1prot_H-paniculata_contig504.12296.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig504 27493..30982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930480.5971682-UTR-H-paniculata_contig504:27473..274921622930480.5971682-UTR-H-paniculata_contig504:27473..27492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig504 27474..27492 +
1691481310.9803922-UTR-H-paniculata_contig504:27473..274921691481310.9803922-UTR-H-paniculata_contig504:27473..27492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig504 27474..27492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930480.6154284-CDS-H-paniculata_contig504:27492..278541622930480.6154284-CDS-H-paniculata_contig504:27492..27854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 27493..27854 +
1691481311.003333-CDS-H-paniculata_contig504:27492..278541691481311.003333-CDS-H-paniculata_contig504:27492..27854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 27493..27854 +
1622930480.6320362-CDS-H-paniculata_contig504:28279..283581622930480.6320362-CDS-H-paniculata_contig504:28279..28358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 28280..28358 +
1691481311.0140295-CDS-H-paniculata_contig504:28279..283581691481311.0140295-CDS-H-paniculata_contig504:28279..28358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 28280..28358 +
1622930480.6461773-CDS-H-paniculata_contig504:28934..291281622930480.6461773-CDS-H-paniculata_contig504:28934..29128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 28935..29128 +
1691481311.023644-CDS-H-paniculata_contig504:28934..291281691481311.023644-CDS-H-paniculata_contig504:28934..29128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 28935..29128 +
1622930480.6605775-CDS-H-paniculata_contig504:30792..309821622930480.6605775-CDS-H-paniculata_contig504:30792..30982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 30793..30982 +
1691481311.0337336-CDS-H-paniculata_contig504:30792..309821691481311.0337336-CDS-H-paniculata_contig504:30792..30982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig504 30793..30982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig504.12296.1

>prot_H-paniculata_contig504.12296.1 ID=prot_H-paniculata_contig504.12296.1|Name=mRNA_H-paniculata_contig504.12296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
MSWRRLSTALFIVQGRRSLLGARAFATGCTSSSRFFCRAARLNSFGVKLP
RLNVKMMSSTRTTGAVGKPGSNRLIGETSPYLLQHAHNPVDWMPWGEEAF
RKAREEDKPIFLSVGYSTCHWCHVMERESFESEAVAKVLNSKFVSIKVDR
EERPDVDQCFMTFVQATSGGGGWPMSVWLTPDLKPFVGATYFPEQRFIRV
LDTLADNWSTNREEVIKQGNHIIRLLQERLTTIAATGGDPETFLSLPKSR
EAVREGFSVLDKGHDDDLGGWSGGR
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mRNA from alignment at H-paniculata_contig504:27474..30982+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig504.12296.1 ID=mRNA_H-paniculata_contig504.12296.1|Name=mRNA_H-paniculata_contig504.12296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3509bp|location=Sequence derived from alignment at H-paniculata_contig504:27474..30982+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTGATCTACACACTAATATGTCCTGGCGTAGACTGAGCACTGCACTCT
TCATCGTACAAGGCCGTCGGTCTCTTTTAGGTGCCAGGGCTTTTGCAACT
GGGTGCACAAGCAGCTCTAGATTTTTTTGTCGGGCGGCCAGATTGAACAG
TTTCGGCGTCAAACTACCACGATTGAACGTGAAAATGATGTCTTCGACAC
GGACGACCGGTGCTGTGGGGAAACCAGGTAGCAACAGACTGATAGGGGAG
ACGTCGCCCTACTTGCTGCAACACGCGCACAATCCGGTTGATTGGATGCC
GTGGGGGGAGGAGGCTTTTCGCAAGGCCAGAGAGGAGGACAAGCCTATTT
TTTTGTCTGTCGGCTATTCTACGTGCCACTGGTATGCGTGTACTGGACGT
GTTGGGTATATTATCTCCACTTAGGTGTACTCTGCCTGTTTCGCCATTGT
TTCAGGGAGGGGGGGGGAAATGATATCTGGGGGGGTGCAGGAGGAGGAAG
AGGAGGTGACTACAGTAGAGGTGACGTGAATTGGAGAGGTGACATGAATT
GGAGAGGTGACATAAATTGGAGAGGTGACATGAATTGGAGAGAATTGCCG
TGTCGCTTGGGATTTCGTTTTCGATTCCCTCGATGAAGTATTGAAGGTTT
CAAAACTCTAGTATTCATAAAGCTGCTGATTTTCGCTGGCACCTTTGATT
TTACCTGCCGCCATTTCGGCATTTAGAACACCAGGCGTGTATGTATGGTA
GAGCTCCAACAAAGGAAAATCGTCATGTCTGTGTTGTCGTTTGCCTGATT
CCGCAGGTGCCACGTGATGGAACGCGAGAGTTTTGAAAGCGAGGCCGTGG
CCAAAGTTCTCAACAGCAAATTCGTCAGCATCAAGGTGAATGGACTTTGT
CACATATCATGCAGTACTGTGATATTGGCCGCGTTGCACTGCAAAATGTT
GCACCCCCCGCACAAATACGAATACTTACAAATGATTTTGACAAAAAACT
GATAATATTCTCCTGAGTTTCAGAATGAAGGGAAACATAGAATAAAGTAC
CCACCCCTGTCCATTCGATTTACTAGTATTATGACCAGTCGTGGATGGTC
CTGGGTACATAGAAATCACGAGCTCATTCTGAAACTCAGGCAAATACCTT
CAGTTTTTTTGTAAAAACTATTCGCAGGTATTCGTATTTGTCCGGGGGGG
TGAAATGTTGCCATACATGTAACAAAAAAAGAGAAGCAATACCAAAGAAG
TCAAGGTCGTACTCGTACGCAGCATGTGTACTAACAATAGCGGCACCTTT
AGCTGCAGCTTGATCGCAAGTGAGCGCGCTCTCTGAACCCCGCGAGGTAT
TTGATACTTCAGTGCAGACAGAACCTCCGCGCTCCGCCCACAAAACAGCC
CAGTACAGGCAAGACACCTCCGATCCCATTTCCCCCACATCAACACAATC
GAAACCAAAAGGTGGACCGAGAGGAGCGACCAGATGTTGACCAATGCTTC
ATGACGTTTGTGCAAGCCACTTCTGGGGGTGGCGGTTGGCCAATGAGCGT
GTGGCTGACCCCCGACCTCAAGCCCTTCGTAGGAGCGACCTACTTTCCGG
AGCAGCGATTTATTCGCGTGCTTGACACGCTGGCCGACAATTGGTCCACC
AACAGGTGACGGCGCCGGTGGTGCACGGATCATACCCGCCATTTCTACGG
GTAGATCGTCCGATCCGTACATCATCTTTTATCCGTATATGTTTTCCACA
GGCGAGCCCTACATCATGGTGCGATCTGTACACATTTCTGCAATGGTAAT
CTGTTTCATACGGATCGGTAGTATACGTTTGCCACAAGTCATCCGTACAC
CGTGTTTGATCCGTACATGCTTTTGCACTGTGATCCGTATCCCCACGGAT
CGGTAGCAAATGTTTGCCACAAGCCATCTATACATCGTGTTTGATCCATA
CATGTTTCGCACTGGTGATCCGTACCCTGCGGATCGTTTGCCCATGATCC
TTACAATTGATTCTTACTCTACGGATCGCCATCGTGTACGGATGGTCGGC
GCAATAAGTGATGTTTCTAGGGGAAGAGTTCCTCTTCGCCGAATTTTTGT
TACCGTTCGGCAAAAATATTAAATGGTTCTTGCCAAATTGTTATCTTTCG
GGGTATCGTGCTTGCTGTTCGGGACATTGAATTACTGTGAGGCAGCAACT
TCGTTTTTCTAGGATAGGATCGTACGCTACGGATTGTTATAAAATGTTTG
CGCCACTGATCTATACCCTACGGATCGTTTGCCCGGTGATCTTTACAGCT
GATCCGTAGGAGACGGATCGTTAGTGCATGTTTTGCACAAGCCATCTGTT
CACCGTGTTTGATCCGTACATGTTTCGCACCGGTGATCCGTACCCCTGCA
GATCGTTCGCAATTTACCTGCACCAGGGATCCGCACACCGTGTTTTATCC
ACACAAGTTTCTCCTCTAGTGATCCGTATATCGTGTTTTACCCGTACATA
TTTCACAACTAGTAATCCATAGCCTACGAACCATTGACACATATCTGTCT
ACCACTGATCCGTACTCCAAGGATCGTGCGTGTATTGATCCGTCCAACGT
GTAAATGGAAAGCTCATACCCCCCGCCCCCGTCGCATTACTATGCGGTTG
TGTCTTGGGTGGACCAAGCCTTTTTCCGGTCTCAAGCTGAGCCCGCATTC
CATTGCCTTCCGGCTATTGCGGGTCACGCAACGGCGAAACCTGCTGACCA
ATAAACAGTCTGCAACACCGCACGCAATAATAAAAACCTTTCCAATTGGT
GCACATATTGTACCTGGACCGTACATTGTTCGTGAATTGTCCGTCTACAA
CAGTAAAGCACAAGTGTTGGTGAACCAAATCGTTCACATCTGGCAAACAC
AAGATACTAGAACTGCAAGATTAAGCTTTGGTCAAAAGTTGTCTGAAATC
AGTTGCGCAAATAACCCCAAATATTGATTTACTCCCTCCGCCAAGCAGTT
TTCTCTCTCACCCCCTGCCACACTCGTCCCGGCTATGATTGCGCAGAGTG
TACATAAAATATGTGTGGAAATTCACCTTTTTGTTAGTCTTATAGTATCT
AACAATCATGGATCCATATCCGAACTTGATAAAAAGCGCAATCGATTCCC
GACGAGGCACTACATAATTACCCTGCCCTACTCCCCGCCGATCACCCTGA
CATAGCCCAGCCCTACCAACCCATCTGTCACGTTTGAGGGTTGTAGGACT
CCGACTGCATCCCACCCTTTGTGGGCGCTGCTCACCCCCCCCACCCCACC
TCCTGCGTGCGCGTGCCAGGGAAGAGGTAATCAAGCAAGGAAATCACATC
ATACGGCTCTTGCAGGAACGGCTCACCACAATTGCAGCAACTGGCGGCGA
CCCCGAAACATTCCTGAGTCTCCCAAAGAGCCGCGAAGCGGTGCGAGAAG
GATTTTCGGTCCTGGACAAGGGACACGACGACGATCTCGGTGGATGGAGC
GGAGGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig504:27474..30982+

>mRNA_H-paniculata_contig504.12296.1 ID=mRNA_H-paniculata_contig504.12296.1|Name=mRNA_H-paniculata_contig504.12296.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig504:27474..30982+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTGGCGTAGACTGAGCACTGCACTCTTCATCGTACAAGGCCGTCG
GTCTCTTTTAGGTGCCAGGGCTTTTGCAACTGGGTGCACAAGCAGCTCTA
GATTTTTTTGTCGGGCGGCCAGATTGAACAGTTTCGGCGTCAAACTACCA
CGATTGAACGTGAAAATGATGTCTTCGACACGGACGACCGGTGCTGTGGG
GAAACCAGGTAGCAACAGACTGATAGGGGAGACGTCGCCCTACTTGCTGC
AACACGCGCACAATCCGGTTGATTGGATGCCGTGGGGGGAGGAGGCTTTT
CGCAAGGCCAGAGAGGAGGACAAGCCTATTTTTTTGTCTGTCGGCTATTC
TACGTGCCACTGATGTCCTGGCGTAGACTGAGCACTGCACTCTTCATCGT
ACAAGGCCGTCGGTCTCTTTTAGGTGCCAGGGCTTTTGCAACTGGGTGCA
CAAGCAGCTCTAGATTTTTTTGTCGGGCGGCCAGATTGAACAGTTTCGGC
GTCAAACTACCACGATTGAACGTGAAAATGATGTCTTCGACACGGACGAC
CGGTGCTGTGGGGAAACCAGGTAGCAACAGACTGATAGGGGAGACGTCGC
CCTACTTGCTGCAACACGCGCACAATCCGGTTGATTGGATGCCGTGGGGG
GAGGAGGCTTTTCGCAAGGCCAGAGAGGAGGACAAGCCTATTTTTTTGTC
TGTCGGCTATTCTACGTGCCACTGGTGCCACGTGATGGAACGCGAGAGTT
TTGAAAGCGAGGCCGTGGCCAAAGTTCTCAACAGCAAATTCGTCAGCATC
AAGGTGCCACGTGATGGAACGCGAGAGTTTTGAAAGCGAGGCCGTGGCCA
AAGTTCTCAACAGCAAATTCGTCAGCATCAAGGTGGACCGAGAGGAGCGA
CCAGATGTTGACCAATGCTTCATGACGTTTGTGCAAGCCACTTCTGGGGG
TGGCGGTTGGCCAATGAGCGTGTGGCTGACCCCCGACCTCAAGCCCTTCG
TAGGAGCGACCTACTTTCCGGAGCAGCGATTTATTCGCGTGCTTGACACG
CTGGCCGACAATTGGTCCACCAACAGGTGGACCGAGAGGAGCGACCAGAT
GTTGACCAATGCTTCATGACGTTTGTGCAAGCCACTTCTGGGGGTGGCGG
TTGGCCAATGAGCGTGTGGCTGACCCCCGACCTCAAGCCCTTCGTAGGAG
CGACCTACTTTCCGGAGCAGCGATTTATTCGCGTGCTTGACACGCTGGCC
GACAATTGGTCCACCAACAGGGAAGAGGTAATCAAGCAAGGAAATCACAT
CATACGGCTCTTGCAGGAACGGCTCACCACAATTGCAGCAACTGGCGGCG
ACCCCGAAACATTCCTGAGTCTCCCAAAGAGCCGCGAAGCGGTGCGAGAA
GGATTTTCGGTCCTGGACAAGGGACACGACGACGATCTCGGTGGATGGAG
CGGAGGGAGGGGAAGAGGTAATCAAGCAAGGAAATCACATCATACGGCTC
TTGCAGGAACGGCTCACCACAATTGCAGCAACTGGCGGCGACCCCGAAAC
ATTCCTGAGTCTCCCAAAGAGCCGCGAAGCGGTGCGAGAAGGATTTTCGG
TCCTGGACAAGGGACACGACGACGATCTCGGTGGATGGAGCGGAGGGAGG
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