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Homology
BLAST of mRNA_H-paniculata_contig11921.1229.1 vs. uniprot
Match: D7FQG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG5_ECTSI) HSP 1 Score: 269 bits (687), Expect = 7.110e-73 Identity = 119/173 (68.79%), Postives = 138/173 (79.77%), Query Frame = 2
Query: 11 VVWSTMRSVLLGTWEQRPVMSNPRDQTRVYENAAAFVRACFPAQAWLHYHMEVELGLSIKRDYLGHSWGGLVSGLGVRGEFFDPEILRAAQSTQLHRRMSWVMAESGVPWENEDMTWCCPDCFILFSLNVFKHHCRGCGNIYCSAHAPPTPVPPSECALKLCWSCVLEGAVPL 529
V W TM SVLLGTWE+RP + P+D+ R+++N+AAFVRACFPAQ WL +HME E+GLS+ H WGG GLG+ GE F+PEI++AA ST LHR MSWVMAESGVPWE D WCCP+CFILFSLNVF+HHCRGCG +YCSAH PPTPVP + LKLCWSCVLEGAVPL
Sbjct: 580 VPWETMPSVLLGTWERRPQTTVPKDRHRLFDNSAAFVRACFPAQTWLQHHMEEEMGLSLGGTLSRHGWGGPFKGLGMDGEHFNPEIMQAASSTGLHRHMSWVMAESGVPWEANDDAWCCPECFILFSLNVFRHHCRGCGQVYCSAHTPPTPVPSDDRPLKLCWSCVLEGAVPL 752
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 265.8 |
| Seed ortholog evalue | 1.7e-68 |
| Seed eggNOG ortholog | 2880.D7FQG5 |
| KEGG ko | ko:K20242 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | regulation of vesicle fusion |
| EggNOG OGs | KOG4436@1,KOG4436@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04131 |
| Exons | 6 |
| Model size | 2504 |
| Cds size | 612 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11921.1229.1 >prot_H-paniculata_contig11921.1229.1 ID=prot_H-paniculata_contig11921.1229.1|Name=mRNA_H-paniculata_contig11921.1229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp
MRSVLLGTWEQRPVMSNPRDQTRVYENAAAFVRACFPAQAWLHYHMEVEL
GLSIKRDYLGHSWGGLVSGLGVRGEFFDPEILRAAQSTQLHRRMSWVMAE
SGVPWENEDMTWCCPDCFILFSLNVFKHHCRGCGNIYCSAHAPPTPVPPS
ECALKLCWSCVLEGAVPLTSIVPQEDGLLSNGDSYAYPSLATKGVPRSAR
EEQ* back to topmRNA from alignment at H-paniculata_contig11921:1480..6565+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11921.1229.1 ID=mRNA_H-paniculata_contig11921.1229.1|Name=mRNA_H-paniculata_contig11921.1229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5086bp|location=Sequence derived from alignment at H-paniculata_contig11921:1480..6565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGAGGAGGTGGTGTGGTCGACCATGCGCTCGGTGCTGCTCGGCACGT
GGGAGCAACGGCCGGTGATGAGCAATCCGAGGGATCAAACCAGGGTATAC
GAGAACGCGGCTGCTTTCGTTCGTGCTTGTTTCCCAGCCCAGGTGTGTGT
GCATGTATTGAGTGTTAAGTTTTGTCAGGGAGGTGTGTTCGCGTGTGCGG
TGGATGTGTGAAGTATTAAGTGTAAAGTGGGAGCTTGACTTTAATGATGA
GAGTGTTTGGTAGTGTGTGCTGCCAGAAAATGGGAGATGTTGCTGGTAGA
TGAAATTACGGTGATGTTGTGGTCAATAGAGTTTGTTGCCCACATTCTTT
TTTTTCGCTCAAGATGACTGACTGGTCATACTGAGCTCAAATTTGTTTTT
CGATTTTTGTTTCTTCCTGAAGAGCGCGGGAAGACCTGTAGCCATCGCAT
TTCTTATGTGACAGTGGTACTAGTGGAAATGCAGACCATGTCGTGGACGG
CATATTCGCATTCGGCAATTCTAGCGCGGAGTCCGCCGGGCGCTCGCAGC
ACACAAGCTGATAAGGGGAGCAGGAAGTATTGTCACACACCGAAGGTATC
ATGTCGTGCCCGGGTTGGGATTGTACCTTGACTGTTTTGCCGTCAACTGC
CTGACTCGTTGGCTTGTTGGCTTGTTGACTTTTTCTTCGTGTATCTGGTA
TCTATAAAAGAAATTGCAGGTCGAGTGTATGTACATGTAAACGTACAGCG
AGCCAGAGCCTGCTTTCTGGCGACCTTGCAAACAATCTAACCTCCCCCCC
CCCCACCCCTCCTCCTCCTCTTCGTCCTTTTGCTTTTCGCTTTCTGCCTC
TCGGTGGCTTGCCCGCAACTTTCTCCGTTGATTTTCCTGATGCCACCTGT
CTGCACTTGCACTAGGCATGGCTGCACTATCACATGGAGGTGGAGTTGGG
ACTGTCGATAAAGCGCGATTACTTGGGGCATTCGTGGGGCGGCCTGGTTA
GCGGATTAGGTGGGAGACGGACGGAGTCACTCCTCAGTCTTTTTTGCTGC
TCCTCTATCCAAGTTACTGTTGTTTTGTTTGCATCGTTTACCCCAAAATT
TACCGCAGAACTCAATTGCTCCATGTGTAAGCGTTTGTGTGTATATGTGT
CACACTTTCGCCGGCTAGCTTCCCCGTGCTGGAAGTCGTCGGCGCTTGAC
CGCCTGACGTGCTGAACATAAGCGAATCGAGCATTTACTGTTTTCAACAG
TGGACGGGGCTCAATAAGACCCAACAAACCTCGTCGTCTGGTATTTTTCC
GTTTTTTGGACTCGAGTGTTTTGGACTCGAGTTTTTTTGGACTCGAAATT
GCTTCGAACGGGCAGCAACGCATTTGGTTACGAAAATACCCAATCGGCTA
ATGACAAAATTCAATCGGGAAATAGAGTCCGCGGCGCGTTCAGAGTAAAT
GGCAATGCGTGGATGGAAAACGATCACCCATGTTCGGGTAGCCTGTACAT
CGCAGTGTCGTTGTCTGTCATTTCGTGGTAAGTTCACAACCGAAGTGCTG
CAGAACTCCGGACAAACAGCTAAGTTAGGAAGAGTAGCGGTTATGCTCCT
GTCCTCTATTTTGTTTCCTCCTGCTCTAGTCTGCCCACATGAAGAAAAAT
ATGTCCAGCCCATGTACCGGCCAGGAACGACGATGCACAGATGTTTCAAT
ATTAGCATGTTTGCACTTGTTTCGTGTACGACAATCAATCAATCAAGCTC
TTGCTTATCACTCTGTACATTACATCACCACATCTATCGGTACACGCCTG
TACGTAGACAGCCCTGCGATCTCTTGCACAGCTGCGAGAAACTCACCAAA
AGACCATACATCAATATCACAGTGACATCAAAATCATTCGTGATATGTGG
ACATGGTACTTGGGGGCAAAAACAAACAAACGGGTTGCGGGAGCTCAGGT
CGTTGCGACCGGGTTTGGGTCATCGACGAAGGCTCGGTACTGATAGAAAC
AGTGCACAACGGACCCCTATCCGCGCATGATGGAAGTATATTTACGAGCA
GACCCACGAGAACTGGCCAAATCTGGTGAGCAGTTTGCTTCGCGTATGTA
TTCTGGAATTAGTATTGTTTTGCCCTTTTGTTCTGGTTATTGTATCGCTG
TCCTGCAACAACCACAACATAAAGGTGTTCGGGGCGAGTTCTTCGACCCG
GAGATACTTCGAGCAGCTCAGTCCACCCAGCTTCACCGGCGTATGAGCTG
GGTCATGGCTGAGTCCGGAGTGCCATGGGAGAACGAGGACATGACGTGGT
GCTGTCCTGACTGCTTCATCCTTTTCAGCCTCAACGTGTTTAAGGTGAGA
AATGACAAATGACAAGACGACCCATCCAGCATTGAAGAGTAGATGCGCCT
CGACTTTCGTTAGGGTTGGTATGTCTGTCAAAGAGAGAAAGAGGGTGTTG
ACGGTTTCCATTCGATCATTCGTTGACGAGATTACACGGAGAGAGCGGAG
GGCACGGAGGGGACGGAGGGGGGGGGGAAGGGTATTTTGATACTCGAAAC
ATGTCTACGATTAACATTTGTCGGTACTCTTTGCTTCCTGGATTAGATTT
AGTACCCCAAAAGATTCTTCTGCTGCTTTTGCCATGGCAAGCTATGCTTC
CGGCTTTTAGGCAGCTAGCTATGTGGTCGGTTATTCCCATGGTATGTCAC
AGCACATACATCCCCACCGTACAACGATAAACACTGCCTCGGGTTCTTCT
CTTGTAGCTCGTGTTTTCCTCTCGTGCTCTACAATATTAATAAGCTAAAC
ATCACTAGTTACACCGATATTTCGATGTTGTGTCGCGCAGCATCACTGCC
GAGGTTGCGGCAACATCTACTGCAGCGCCCATGCGCCCCCAACGCCAGTA
CCCCCGTCTGAGTGCGCCCTGAAGCTGTGCTGGTCGTGCGTGCTGGAAGG
CGCCGTGCCACTGACGTCGATCGTACCGCAAGAGGACGGGCTGCTGTCTA
ACGGTGACTCCTACGCCTACCCTTCTCTAGCAACAAAAGGCGGCGCCAGC
GTGGCCTCCACCGCGACTAGGTTCGCTCGGCAGCTCTCACCCTCATCTGC
CGAGCGTAACGCCGCAGCAACCAGAAATAAAAAGAAAACGAATCCAGCAG
TCACGGGGACGACGCATGAGAAGCAGTGCCAAGATCAGCAAGAGAGGAGC
AGTAAGCCAAAAGCCGACGTGGCGGGAGGGTTTTTCTCGGCCCTCGTCTC
CCTCATAGAAACGGTGGCCGCGCCGATCACCCCCGAGCGGTCGCGCGCCG
GCGCGCGTCGCAAGCGCGAGGCGGCGGCGATAGTAAGCGCGTCGGCGGGA
TCGTTCAGCGAGGTGGAGTCCGAATCGAGCTCGACTTCGGGAAGCTCGTC
TCCCGATAGCACGCCGGCGACCGATGGTCTCAGGGCGAGGCAAGTGGCTA
TACCGTCGACCTCAGCGGCCAGCAATGACCATGATGATCGTCGCGGACCG
GCGGCAGGGAACCGCGCCGCCCGAAACGTGACGAGTGACGGCAGAAGTGG
TAATTGTACCAGCAGCACCAGCAGCAGCTCTGCGACAAACGAAAAGTCGC
GGTCGTCGGCTGGAACTATCTCGCAGATGGCACCACAACAACGCCTGGAT
CCGAATCGCGCGGTCGCGCAGCGGGGTTTCGGAGCAGGCGCGACCATCAC
AGCCGACGGCGGCAGTGAGAGTAGCAGCGGCAATAGCAATAGTCACATTA
ACCCGAGAGGAAAATTACAGCGTGGGTTTGGGTCTTCTGTTTCCACTGTT
AGTTCGACTGATGCCGGGGAGGAGGAGGAAGCTATGCCCTTGCAGAGAGG
GTTCGGGGCGAGCGGGGCGATGAAGAGGGGGTTTCCAAGCGAGGACCCGA
TGAAGAGGGGCTTCGGACCGCGTTGATTCATTTTTGTACATATATTTTTG
GCGCGTTTTAGAGGGAGGTTTCCTTTGGGTGTTGTTTTAGTTCGCATGTG
TGTATTTGTATTTGTATGTGTATCTTTATGTGTATGTGTGTGTGTGTATG
TATATGTGTGTGTGTGTTATGTGCGTGTTTGTCATTGAGTGCAGGAAGGT
GCAAATACGTTGTTGACTAAGGCCGGGGTGTATCACGTTCGTTTGCAGAT
GTGTATGTGTGTTGTGTTTGAATTTGTGTCTGTGCGACTTGGCTAACAGT
TTTCGCGGCCTCGGTGAGAGGTTTTTGTGCGTTCGTGTTTGTTGTAATTT
TTGCGAAATACGTCCTTCACTTCATGGGCATTTGTTTTACCCACGCGCTG
TGCAAGTCTCGTTGTCAGATTGTTTTATGCGTTTCGAGAATGGGAAGCGC
ACACAGTAGGTCCAATAGTTGTAGCACTTGCCTTGCATACGAGGGTTCGT
TGCAAGATGAGCATACTGTTCGAGGTCAGGTAAATAGAGCCAAGCTATAC
GGTATACGCTGCTTCTATAATTCTTCTGTTCCATGAAAGAGTCGCCTCGT
TCTGTAGAGGTACTTTTTCATTTTCGATTTTTTTGTTGTTGTTTGGAATC
TAGGGTGTTTTGAGGGTTGATCCCCAGATGTTGGCTCTTGTTTTAACCGC
GTGTGTTTTTGTACCCAACGTCAACTGTGTGACGTAAAATTTGCGGGCAT
CAAGCCCGCGGACATGTCAAGATTCTGACTAACAGTACAATTGGAGATGA
TCAAGTGCCTTTGTAAAAGGGGTCGACTATTCTTCTGGAACAGCAGAAGT
AGCGTGGTAAGGTTATCTTTAGATTTATGCACAGAAAGCGCAGTTTGGTC
TCGGTCACTTTCTTTCCGAAGATATTTGTTCTATTTTTACAATTTTACTA
GTAGAAGATGCTTGAGCAATAGCGAAGTAGTACAGTACATATCCTTAGGC
GAATTTAATAGGTAAACTAGCTACAATAATTTTAATTAATTTGTATTGCA
CGAAAATGGGTGACTGACAGCGTTATGTCGTACTCCAGAGGCGTTTTGTG
GCTGGGCCTAAAAGAACGAGCCTGAGCGGCACCTTCGCTAACATGAATGA
ACTACTGTACTAGGTTATCTAAATACAAACGCCGCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig11921:1480..6565+ >mRNA_H-paniculata_contig11921.1229.1 ID=mRNA_H-paniculata_contig11921.1229.1|Name=mRNA_H-paniculata_contig11921.1229.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig11921:1480..6565+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTCGGTGCTGCTCGGCACGTGGGAGCAACGGCCGGTGATGAGCAA
TCCGAGGGATCAAACCAGGGTATACGAGAACGCGGCTGCTTTCGTTCGTG
CTTGTTTCCCAGCCCAGATGCGCTCGGTGCTGCTCGGCACGTGGGAGCAA
CGGCCGGTGATGAGCAATCCGAGGGATCAAACCAGGGTATACGAGAACGC
GGCTGCTTTCGTTCGTGCTTGTTTCCCAGCCCAGGCATGGCTGCACTATC
ACATGGAGGTGGAGTTGGGACTGTCGATAAAGCGCGATTACTTGGGGCAT
TCGTGGGGCGGCCTGGTTAGCGGATTAGGCATGGCTGCACTATCACATGG
AGGTGGAGTTGGGACTGTCGATAAAGCGCGATTACTTGGGGCATTCGTGG
GGCGGCCTGGTTAGCGGATTAGGTGTTCGGGGCGAGTTCTTCGACCCGGA
GATACTTCGAGCAGCTCAGTCCACCCAGCTTCACCGGCGTATGAGCTGGG
TCATGGCTGAGTCCGGAGTGCCATGGGAGAACGAGGACATGACGTGGTGC
TGTCCTGACTGCTTCATCCTTTTCAGCCTCAACGTGTTTAAGGTGTTCGG
GGCGAGTTCTTCGACCCGGAGATACTTCGAGCAGCTCAGTCCACCCAGCT
TCACCGGCGTATGAGCTGGGTCATGGCTGAGTCCGGAGTGCCATGGGAGA
ACGAGGACATGACGTGGTGCTGTCCTGACTGCTTCATCCTTTTCAGCCTC
AACGTGTTTAAGCATCACTGCCGAGGTTGCGGCAACATCTACTGCAGCGC
CCATGCGCCCCCAACGCCAGTACCCCCGTCTGAGTGCGCCCTGAAGCTGT
GCTGGTCGTGCGTGCTGGAAGGCGCCGTGCCACTGACGTCGATCGTACCG
CAAGAGGACGGGCTGCTGTCTAACGGTGACTCCTACGCCTACCCTTCTCT
AGCAACAAAAGGCGCATCACTGCCGAGGTTGCGGCAACATCTACTGCAGC
GCCCATGCGCCCCCAACGCCAGTACCCCCGTCTGAGTGCGCCCTGAAGCT
GTGCTGGTCGTGCGTGCTGGAAGGCGCCGTGCCACTGACGTCGATCGTAC
CGCAAGAGGACGGGCTGCTGTCTAACGGTGACTCCTACGCCTACCCTTCT
CTAGCAACAAAAGGCGTGCCAAGATCAGCAAGAGAGGAGCAGTAATGCCA
AGATCAGCAAGAGAGGAGCAGTAA back to top
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