mRNA_H-paniculata_contig50384.12290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50384.12290.1
Unique NamemRNA_H-paniculata_contig50384.12290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50384.12290.1 vs. uniprot
Match: A0A178U605_ARATH (ULP_PROTEASE domain-containing protein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=A0A178U605_ARATH)

HSP 1 Score: 52.0 bits (123), Expect = 7.670e-5
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:  226 VLSVDSEGLEYSEVGGMEIWICDNGATKHMAHNSDFLCDYQQCDGHVRLADGKCLPIEGVGMLFLQFRFDSEVF 447
            ++S+   G+ +S        + D+GA+ HM  NS+ L + +   GHV +A+G  +PIEG+G L L F  DS+ F
Sbjct:  323 IVSLKESGITFSSQTSSSSIVIDSGASHHMISNSNLLDNIEPALGHVIIANGDKVPIEGIGNLKL-FNKDSKAF 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50384.12290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A178U605_ARATH7.670e-536.49ULP_PROTEASE domain-containing protein n=1 Tax=Ara... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50384contigH-paniculata_contig50384:654..1103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930479.6861684-CDS-H-paniculata_contig50384:653..11031622930479.6861684-CDS-H-paniculata_contig50384:653..1103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50384 654..1103 +
1691481310.542684-CDS-H-paniculata_contig50384:653..11031691481310.542684-CDS-H-paniculata_contig50384:653..1103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50384 654..1103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50384.12290.1prot_H-paniculata_contig50384.12290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50384 654..1103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50384.12290.1

>prot_H-paniculata_contig50384.12290.1 ID=prot_H-paniculata_contig50384.12290.1|Name=mRNA_H-paniculata_contig50384.12290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=150bp
RSKDHLQRDCPNVYCRRCGKRGHDLNACPQLVNEDACLAEAEIEIEFEEA
LKVDLDEEEFMASYIASTSTTNKGEVLSVDSEGLEYSEVGGMEIWICDNG
ATKHMAHNSDFLCDYQQCDGHVRLADGKCLPIEGVGMLFLQFRFDSEVF*
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mRNA from alignment at H-paniculata_contig50384:654..1103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50384.12290.1 ID=mRNA_H-paniculata_contig50384.12290.1|Name=mRNA_H-paniculata_contig50384.12290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=450bp|location=Sequence derived from alignment at H-paniculata_contig50384:654..1103+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGAATGCGTGTCCCCAACTTGTCAATG
AAGATGCGTGTTTGGCTGAAGCTGAAATTGAGATTGAATTTGAAGAGGCG
CTCAAGGTTGACCTGGATGAAGAAGAGTTCATGGCGTCATACATCGCGTC
GACTTCCACCACAAACAAGGGAGAGGTTTTGTCTGTGGACTCTGAGGGGT
TAGAATATAGTGAGGTGGGGGGGATGGAGATCTGGATATGTGATAATGGT
GCAACGAAACACATGGCCCATAATTCAGATTTTCTTTGTGATTACCAGCA
ATGTGATGGGCATGTACGCCTTGCAGATGGTAAATGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCGGAGGTTTTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig50384:654..1103+

>mRNA_H-paniculata_contig50384.12290.1 ID=mRNA_H-paniculata_contig50384.12290.1|Name=mRNA_H-paniculata_contig50384.12290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at H-paniculata_contig50384:654..1103+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGAATGCGTGTCCCCAACTTGTCAATG
AAGATGCGTGTTTGGCTGAAGCTGAAATTGAGATTGAATTTGAAGAGGCG
CTCAAGGTTGACCTGGATGAAGAAGAGTTCATGGCGTCATACATCGCGTC
GACTTCCACCACAAACAAGGGAGAGGTTTTGTCTGTGGACTCTGAGGGGT
TAGAATATAGTGAGGTGGGGGGGATGGAGATCTGGATATGTGATAATGGT
GCAACGAAACACATGGCCCATAATTCAGATTTTCTTTGTGATTACCAGCA
ATGTGATGGGCATGTACGCCTTGCAGATGGTAAATGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCGGAGGTTTTTTGA
CGCTCCAAGGATCACCTTCAACGGGACTGCCCCAACGTGTACTGTCGGCG
ATGTGGTAAGCGTGGTCACGACTTGAATGCGTGTCCCCAACTTGTCAATG
AAGATGCGTGTTTGGCTGAAGCTGAAATTGAGATTGAATTTGAAGAGGCG
CTCAAGGTTGACCTGGATGAAGAAGAGTTCATGGCGTCATACATCGCGTC
GACTTCCACCACAAACAAGGGAGAGGTTTTGTCTGTGGACTCTGAGGGGT
TAGAATATAGTGAGGTGGGGGGGATGGAGATCTGGATATGTGATAATGGT
GCAACGAAACACATGGCCCATAATTCAGATTTTCTTTGTGATTACCAGCA
ATGTGATGGGCATGTACGCCTTGCAGATGGTAAATGTCTCCCGATCGAAG
GAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCGGAGGTTTTTTGA
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