prot_H-paniculata_contig5036.12288.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5036.12288.1
Unique Nameprot_H-paniculata_contig5036.12288.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length62
Homology
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A5H2XTU8_PRUDU (RmlC-like cupins superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XTU8_PRUDU)

HSP 1 Score: 63.2 bits (152), Expect = 4.100e-10
Identity = 28/62 (45.16%), Postives = 41/62 (66.13%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVA+G++Q+EG+ Y + +SPT  M ++R L A  AA+D  L   D   AFL  D+ EE+Y+
Sbjct:  194 RLVAKGYKQLEGIDYHDTFSPTAKMITVRCLLALAAAQDWSLHQLDVNNAFLHGDLHEEIYM 255          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: UPI001A1815EF (Uncharacterized protein n=1 Tax=Streptomyces albiflaviniger TaxID=114683 RepID=UPI001A1815EF)

HSP 1 Score: 62.8 bits (151), Expect = 4.350e-10
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVA+GFRQI+GV Y E YSP   + S+R+L A  A  D E+   D + AFL  +++EE+Y+
Sbjct:   40 RLVAKGFRQIQGVDYDETYSPVAMLKSVRILLAIAAFFDYEIWQMDVKTAFLNGNVEEELYM 101          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q8LNK7_ORYSJ (Putative retroelement n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q8LNK7_ORYSJ)

HSP 1 Score: 62.4 bits (150), Expect = 7.670e-10
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVA+GFRQI+GV+Y E +SP   + SIR++ A  A  D E+   D + AFL  ++DE+VY+
Sbjct:  415 RLVAKGFRQIQGVNYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYM 476          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q7Y1M7_ORYSJ (Putative polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7Y1M7_ORYSJ)

HSP 1 Score: 61.6 bits (148), Expect = 1.440e-9
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVA+GFRQI+GV Y E +SP   + SIR++ A  A  D E+   D + AFL  ++DE+VY+
Sbjct:  723 RLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYM 784          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A6H5K2W4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2W4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.540e-9
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVA+GF QI  V Y    SP P+ ASI+++ A    K   L H+D EQA+  A +DEEV++
Sbjct:   49 RLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVEQAYTHATLDEEVFL 110          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q7X7F2_ORYSJ (OSJNBa0023J03.14 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7X7F2_ORYSJ)

HSP 1 Score: 61.2 bits (147), Expect = 1.960e-9
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVY 61
            RLVA+GFRQI+GV Y E +SP   + SIR++ A  A  D E+   D + AFL  ++DE+VY
Sbjct:  367 RLVAKGFRQIQGVDYDETFSPVAILKSIRIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVY 427          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: Q8TFJ1_PICAN (Polyprotein n=7 Tax=Ogataea TaxID=461281 RepID=Q8TFJ1_PICAN)

HSP 1 Score: 60.8 bits (146), Expect = 2.710e-9
Identity = 30/62 (48.39%), Postives = 37/62 (59.68%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLV QGFRQIEG+ YTE +SP     S+R L A  A K   +   D   AFL  D+ EE+Y+
Sbjct:  975 RLVVQGFRQIEGIDYTETFSPVVRYESVRTLLALAAQKHMVIHQMDVTTAFLNGDLAEEIYM 1036          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A177WMM1_BATDL (Uncharacterized protein n=4 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=A0A177WMM1_BATDL)

HSP 1 Score: 60.8 bits (146), Expect = 2.710e-9
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVA+GF Q+ G+ + E Y+P     S+R++ A  A  D E+ H DA  AFL   IDEE+YI
Sbjct: 1066 RLVAKGFAQVPGIDFHETYAPVLKFTSLRIILALAAIYDWEVDHTDANNAFLNGTIDEELYI 1127          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A3E1AY21_RHILT (Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii TaxID=386 RepID=A0A3E1AY21_RHILT)

HSP 1 Score: 59.7 bits (143), Expect = 6.900e-9
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVA+GFRQ++G+ Y E +SP   + SIR++ A  A  D E+   D + AFL  +++E+VY+
Sbjct:  657 RLVAKGFRQVQGIDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLEEDVYM 718          
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Match: A0A224X581_9HEMI (Putative polyprotein (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224X581_9HEMI)

HSP 1 Score: 59.7 bits (143), Expect = 6.910e-9
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    1 RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQAFLKADIDEEVYI 62
            RLVAQGF Q  GVH++E ++P   ++S+R+L A  A  D ++  FD   AFL  +++EE+Y+
Sbjct:  859 RLVAQGFSQKPGVHFSETFAPVCRLSSVRLLAALAAHHDMKIHQFDITAAFLNGELEEEIYM 920          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5036.12288.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5H2XTU8_PRUDU4.100e-1045.16RmlC-like cupins superfamily protein n=1 Tax=Prunu... [more]
UPI001A1815EF4.350e-1048.39Uncharacterized protein n=1 Tax=Streptomyces albif... [more]
Q8LNK7_ORYSJ7.670e-1048.39Putative retroelement n=2 Tax=Oryza sativa subsp. ... [more]
Q7Y1M7_ORYSJ1.440e-948.39Putative polyprotein n=2 Tax=Oryza sativa subsp. j... [more]
A0A6H5K2W4_9PHAE1.540e-946.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q7X7F2_ORYSJ1.960e-949.18OSJNBa0023J03.14 protein n=2 Tax=Oryza sativa TaxI... [more]
Q8TFJ1_PICAN2.710e-948.39Polyprotein n=7 Tax=Ogataea TaxID=461281 RepID=Q8T... [more]
A0A177WMM1_BATDL2.710e-946.77Uncharacterized protein n=4 Tax=Batrachochytrium d... [more]
A0A3E1AY21_RHILT6.900e-943.55Uncharacterized protein n=1 Tax=Rhizobium legumino... [more]
A0A224X581_9HEMI6.910e-943.55Putative polyprotein (Fragment) n=1 Tax=Panstrongy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..62
e-value: 1.2E-14
score: 54.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..61
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5036contigH-paniculata_contig5036:11780..11965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5036.12288.1mRNA_H-paniculata_contig5036.12288.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5036 11780..11965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5036.12288.1 ID=prot_H-paniculata_contig5036.12288.1|Name=mRNA_H-paniculata_contig5036.12288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
RLVAQGFRQIEGVHYTEKYSPTPAMASIRMLFATTAAKDGELQHFDAEQA
FLKADIDEEVYI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like