prot_H-paniculata_contig50314.12285.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50314.12285.1
Unique Nameprot_H-paniculata_contig50314.12285.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length324
Homology
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BLAST of mRNA_H-paniculata_contig50314.12285.1 vs. uniprot
Match: A0A438GAQ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GAQ9_VITVI)

HSP 1 Score: 56.6 bits (135), Expect = 3.870e-5
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 0 
Query:  157 KVNDTGGGTNSGICFGNKKNVAETRVCFQYNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFPSDGFRDIVEHGFTARVAEQGEFASVIELIEEDKPVP---------VDGCEEFWVADSGATAHMTPSNELMFDYETYSNLFVTVANGETLPIVGYG 307
            +VN+ GG       F N+ N + T VCF  +E GH K NC +++    + I     +   +A F SD    IV    T    E  +++   + ++   PV          +      W+ DSGAT HMT +++    + T+S   VTVA+G T  I G+G
Sbjct:  144 RVNNRGGNR----AFENRGNDSSTIVCFYCHEAGHTKKNC-RKLQNRNRRIQTANVATSDTATF-SDSSDKIV----TMTAEEFSKYSQYQDALKASTPVSALAESGKTCLVSSSNKWIIDSGATDHMTGNHKTFSTFRTHSTPPVTVADGSTYEIKGFG 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50314.12285.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A438GAQ9_VITVI3.870e-530.00Retrovirus-related Pol polyprotein from transposon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 171..214
e-value: 4.5E-5
score: 25.2
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 7..104
e-value: 4.9E-10
score: 39.2
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 172..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50314contigH-paniculata_contig50314:30..1001 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50314.12285.1mRNA_H-paniculata_contig50314.12285.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50314 30..1001 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50314.12285.1 ID=prot_H-paniculata_contig50314.12285.1|Name=mRNA_H-paniculata_contig50314.12285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MARPPSGAWRALDAHYSPKHTGARIDVHREFLQLKYSHGQDPDEFWVELE
KVQTHARSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPTLLPERVRA
VVRDKYLSLKEAGGGKGGGQNRALFTGNGKNPAPINLGKRHGGRSHQSAT
SAGAVGKVNDTGGGTNSGICFGNKKNVAETRVCFQYNEPGHLKMNCPQRI
CPICKGIGHGESSHRLSAMFPSDGFRDIVEHGFTARVAEQGEFASVIELI
EEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETYSNLFVTVANGET
LPIVGYGKMLVWMKDRGEIHKFSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf