mRNA_H-paniculata_contig50314.12285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50314.12285.1
Unique NamemRNA_H-paniculata_contig50314.12285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50314.12285.1 vs. uniprot
Match: A0A438GAQ9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GAQ9_VITVI)

HSP 1 Score: 56.6 bits (135), Expect = 3.870e-5
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 1 
Query:  469 KVNDTGGGTNSGICFGNKKNVAETRVCFQYNEPGHLKMNCPQRICPICKGIGHGESSHRLSAMFPSDGFRDIVEHGFTARVAEQGEFASVIELIEEDKPVP---------VDGCEEFWVADSGATAHMTPSNELMFDYETYSNLFVTVANGETLPIVGYG 921
            +VN+ GG       F N+ N + T VCF  +E GH K NC +++    + I     +   +A F SD    IV    T    E  +++   + ++   PV          +      W+ DSGAT HMT +++    + T+S   VTVA+G T  I G+G
Sbjct:  144 RVNNRGGNR----AFENRGNDSSTIVCFYCHEAGHTKKNC-RKLQNRNRRIQTANVATSDTATF-SDSSDKIV----TMTAEEFSKYSQYQDALKASTPVSALAESGKTCLVSSSNKWIIDSGATDHMTGNHKTFSTFRTHSTPPVTVADGSTYEIKGFG 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50314.12285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A438GAQ9_VITVI3.870e-530.00Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50314contigH-paniculata_contig50314:30..1001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2e-07
Seed eggNOG ortholog67593.Physo132874
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size972
Cds size972
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930479.2173612-CDS-H-paniculata_contig50314:29..10011622930479.2173612-CDS-H-paniculata_contig50314:29..1001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50314 30..1001 +
1691481310.3303685-CDS-H-paniculata_contig50314:29..10011691481310.3303685-CDS-H-paniculata_contig50314:29..1001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50314 30..1001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50314.12285.1prot_H-paniculata_contig50314.12285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50314 30..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50314.12285.1

>prot_H-paniculata_contig50314.12285.1 ID=prot_H-paniculata_contig50314.12285.1|Name=mRNA_H-paniculata_contig50314.12285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
MARPPSGAWRALDAHYSPKHTGARIDVHREFLQLKYSHGQDPDEFWVELE
KVQTHARSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPTLLPERVRA
VVRDKYLSLKEAGGGKGGGQNRALFTGNGKNPAPINLGKRHGGRSHQSAT
SAGAVGKVNDTGGGTNSGICFGNKKNVAETRVCFQYNEPGHLKMNCPQRI
CPICKGIGHGESSHRLSAMFPSDGFRDIVEHGFTARVAEQGEFASVIELI
EEDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETYSNLFVTVANGET
LPIVGYGKMLVWMKDRGEIHKFSL
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mRNA from alignment at H-paniculata_contig50314:30..1001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50314.12285.1 ID=mRNA_H-paniculata_contig50314.12285.1|Name=mRNA_H-paniculata_contig50314.12285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=972bp|location=Sequence derived from alignment at H-paniculata_contig50314:30..1001+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGACCACCGTCTGGTGCGTGGCGAGCTCTGGATGCGCATTATTC
ACCAAAACACACGGGTGCCAGAATCGATGTTCACAGAGAGTTTCTCCAAC
TAAAGTACAGTCATGGGCAGGATCCGGATGAGTTTTGGGTAGAGCTGGAA
AAGGTGCAGACGCATGCAAGATCACTCGGAACCGATATTGCCTCAGAGTT
AGTTATAAATAAATTCCTGTCGTCCCTGCCCTCCGAGTATGTCTTTGTGC
GAGACCATCTGCGCATGGAACCCACGCTTTTACCTGAGAGGGTGCGCGCT
GTGGTCAGAGATAAATATTTGTCCTTGAAGGAAGCAGGTGGTGGGAAAGG
AGGTGGACAAAACCGCGCCCTGTTCACAGGGAATGGTAAAAACCCCGCCC
CAATAAATTTAGGGAAGAGGCATGGGGGCAGGTCACACCAATCTGCAACA
AGTGCAGGTGCTGTCGGTAAGGTCAACGACACCGGAGGGGGTACAAACAG
TGGTATTTGTTTCGGAAACAAGAAAAATGTCGCTGAAACTCGTGTTTGTT
TTCAATATAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCGCATA
TGTCCGATCTGCAAAGGGATCGGTCATGGCGAGAGCAGCCACAGGTTGTC
AGCAATGTTCCCTTCGGATGGGTTCAGGGACATTGTTGAACACGGTTTCA
CGGCCAGAGTGGCAGAGCAGGGCGAGTTTGCTTCGGTAATTGAGCTTATT
GAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGGC
GGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATTGATGTTTG
ATTACGAAACCTACAGTAATTTGTTTGTGACAGTGGCTAACGGCGAAACG
CTTCCGATTGTGGGATATGGTAAGATGTTGGTATGGATGAAGGATCGGGG
CGAGATACACAAATTCAGCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig50314:30..1001+

>mRNA_H-paniculata_contig50314.12285.1 ID=mRNA_H-paniculata_contig50314.12285.1|Name=mRNA_H-paniculata_contig50314.12285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig50314:30..1001+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGACCACCGTCTGGTGCGTGGCGAGCTCTGGATGCGCATTATTC
ACCAAAACACACGGGTGCCAGAATCGATGTTCACAGAGAGTTTCTCCAAC
TAAAGTACAGTCATGGGCAGGATCCGGATGAGTTTTGGGTAGAGCTGGAA
AAGGTGCAGACGCATGCAAGATCACTCGGAACCGATATTGCCTCAGAGTT
AGTTATAAATAAATTCCTGTCGTCCCTGCCCTCCGAGTATGTCTTTGTGC
GAGACCATCTGCGCATGGAACCCACGCTTTTACCTGAGAGGGTGCGCGCT
GTGGTCAGAGATAAATATTTGTCCTTGAAGGAAGCAGGTGGTGGGAAAGG
AGGTGGACAAAACCGCGCCCTGTTCACAGGGAATGGTAAAAACCCCGCCC
CAATAAATTTAGGGAAGAGGCATGGGGGCAGGTCACACCAATCTGCAACA
AGTGCAGGTGCTGTCGGTAAGGTCAACGACACCGGAGGGGGTACAAACAG
TGGTATTTGTTTCGGAAACAAGAAAAATGTCGCTGAAACTCGTGTTTGTT
TTCAATATAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCGCATA
TGTCCGATCTGCAAAGGGATCGGTCATGGCGAGAGCAGCCACAGGTTGTC
AGCAATGTTCCCTTCGGATGGGTTCAGGGACATTGTTGAACACGGTTTCA
CGGCCAGAGTGGCAGAGCAGGGCGAGTTTGCTTCGGTAATTGAGCTTATT
GAAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGGC
GGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATTGATGTTTG
ATTACGAAACCTACAGTAATTTGTTTGTGACAGTGGCTAACGGCGAAACG
CTTCCGATTGTGGGATATGGTAAGATGTTGGTATGGATGAAGGATCGGGG
CGAGATACACAAATTCAGCTTGATGGCAAGACCACCGTCTGGTGCGTGGC
GAGCTCTGGATGCGCATTATTCACCAAAACACACGGGTGCCAGAATCGAT
GTTCACAGAGAGTTTCTCCAACTAAAGTACAGTCATGGGCAGGATCCGGA
TGAGTTTTGGGTAGAGCTGGAAAAGGTGCAGACGCATGCAAGATCACTCG
GAACCGATATTGCCTCAGAGTTAGTTATAAATAAATTCCTGTCGTCCCTG
CCCTCCGAGTATGTCTTTGTGCGAGACCATCTGCGCATGGAACCCACGCT
TTTACCTGAGAGGGTGCGCGCTGTGGTCAGAGATAAATATTTGTCCTTGA
AGGAAGCAGGTGGTGGGAAAGGAGGTGGACAAAACCGCGCCCTGTTCACA
GGGAATGGTAAAAACCCCGCCCCAATAAATTTAGGGAAGAGGCATGGGGG
CAGGTCACACCAATCTGCAACAAGTGCAGGTGCTGTCGGTAAGGTCAACG
ACACCGGAGGGGGTACAAACAGTGGTATTTGTTTCGGAAACAAGAAAAAT
GTCGCTGAAACTCGTGTTTGTTTTCAATATAATGAGCCAGGTCATCTGAA
GATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAAGGGATCGGTCATG
GCGAGAGCAGCCACAGGTTGTCAGCAATGTTCCCTTCGGATGGGTTCAGG
GACATTGTTGAACACGGTTTCACGGCCAGAGTGGCAGAGCAGGGCGAGTT
TGCTTCGGTAATTGAGCTTATTGAAGAGGACAAGCCAGTACCAGTAGATG
GTTGTGAGGAGTTTTGGGTGGCGGACAGTGGGGCTACGGCCCACATGACT
CCGTCTAACGAATTGATGTTTGATTACGAAACCTACAGTAATTTGTTTGT
GACAGTGGCTAACGGCGAAACGCTTCCGATTGTGGGATATGGTAAGATGT
TGGTATGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTG
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