mRNA_H-paniculata_contig50273.12279.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50273.12279.1
Unique NamemRNA_H-paniculata_contig50273.12279.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50273.12279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50273contigH-paniculata_contig50273:736..1298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size215
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930478.237213-CDS-H-paniculata_contig50273:735..9091622930478.237213-CDS-H-paniculata_contig50273:735..909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50273 736..909 -
1691481309.7775695-CDS-H-paniculata_contig50273:735..9091691481309.7775695-CDS-H-paniculata_contig50273:735..909Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50273 736..909 -
1622930478.2545056-CDS-H-paniculata_contig50273:1259..12981622930478.2545056-CDS-H-paniculata_contig50273:1259..1298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50273 1260..1298 -
1691481309.788639-CDS-H-paniculata_contig50273:1259..12981691481309.788639-CDS-H-paniculata_contig50273:1259..1298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50273 1260..1298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50273.12279.1prot_H-paniculata_contig50273.12279.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50273 736..1298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50273.12279.1

>prot_H-paniculata_contig50273.12279.1 ID=prot_H-paniculata_contig50273.12279.1|Name=mRNA_H-paniculata_contig50273.12279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MVISVAMLFLFLNVRRFRARCKQWMMCKARRAKKMRLKGARSAAYRGILL
PRDEVIKLPQDTMTIEVPQDF
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mRNA from alignment at H-paniculata_contig50273:736..1298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50273.12279.1 ID=mRNA_H-paniculata_contig50273.12279.1|Name=mRNA_H-paniculata_contig50273.12279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=563bp|location=Sequence derived from alignment at H-paniculata_contig50273:736..1298- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCATCTCGGTGGCCATGTTATTCTTATTTCTCAATGTGAGGGAGAT
GTTGTGGCACCACTACTACTACCCACTACAAGTAGAGGTTCGGACAATAT
AAGGCACGCTGTCTGTGATATAGTGACGTGTATTTTAGTGAGTAGCGTGG
TGGACGTTTTCCTGCAGTCCTTGGCAATGGTATACAGCCCGTTCTGCAAC
GGAATTGCTGTTAAGGACAACAGTCGAGTTTTTTGTGCGACTTACGTCGA
GCCGAGCAAAAACATTTTACCGGGCTCGACCCAGCACTCAAGACTCTGCA
ACAAAACGATGAATGGTTGTGGTGGTTCACTCCACAAGTCGGATGCTCCG
TTCGTTTTCTTTTACACCCCGTCGTTTTCTCCGACCCAGGTGCGACGGTT
CCGTGCCAGGTGCAAGCAATGGATGATGTGCAAAGCTCGCCGGGCTAAGA
AAATGCGGCTCAAGGGGGCGAGATCTGCCGCATACCGTGGGATATTGCTA
CCACGGGACGAGGTTATCAAGCTACCACAGGATACCATGACTATCGAAGT
ACCACAGGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig50273:736..1298-

>mRNA_H-paniculata_contig50273.12279.1 ID=mRNA_H-paniculata_contig50273.12279.1|Name=mRNA_H-paniculata_contig50273.12279.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig50273:736..1298- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCATCTCGGTGGCCATGTTATTCTTATTTCTCAATATGGTCATCTC
GGTGGCCATGTTATTCTTATTTCTCAATGTGCGACGGTTCCGTGCCAGGT
GCAAGCAATGGATGATGTGCAAAGCTCGCCGGGCTAAGAAAATGCGGCTC
AAGGGGGCGAGATCTGCCGCATACCGTGGGATATTGCTACCACGGGACGA
GGTTATCAAGCTACCACAGGATACCATGACTATCGAAGTACCACAGGACT
TCGTGCGACGGTTCCGTGCCAGGTGCAAGCAATGGATGATGTGCAAAGCT
CGCCGGGCTAAGAAAATGCGGCTCAAGGGGGCGAGATCTGCCGCATACCG
TGGGATATTGCTACCACGGGACGAGGTTATCAAGCTACCACAGGATACCA
TGACTATCGAAGTACCACAGGACTTC
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