mRNA_H-paniculata_contig5026.12278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: A0A6H5L587_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L587_9PHAE) HSP 1 Score: 530 bits (1364), Expect = 1.070e-172 Identity = 334/651 (51.31%), Postives = 387/651 (59.45%), Query Frame = 1
Query: 1 LRNTRQS-LPERLRVIVGLGSKTDEMCRHLMTHLDKEEEGALPLIKHYFTGQEMQALVGKIMGKRPTELMQARNSRTILAMMIKNLPPDEVWTVLGYMRHAVKDTYFEKWLAAGGFRWPTNKVP----------NTLAFIHQQXXXXXXXXXXXXXGKTAPGAAAAVDGNASAAVAQGSRD---------NCFPSCVSYAATASCPPLEAGAEVA------------RRPSKRVGKSMMLRNGKDRGQGEGGEDYYGVNGGS------CPLDQEFEGMNLDGGGRFKPRPSPFGGIACKEARIHGIRKALGVRRTGDTKEGASFSARVNG---SLDVSDGRLSSFRMCSVCKYIGRCPVSQPLSQREFEVAVKRLSHMTGISTERKSELVQAMRNHMYQVRKRPRSGGPAVGPASQSSTSSLGLSGTPTSTLSGRDAPARGEGGSVGKGADGGAREMVAPARYYTSTQPDIENADGSAAAGTGGLIPPPMFTREDMAPTYHFLGAVSAAGETVNGGIGAEAGGG-----GGEGVVLGCPHYRRACKLRAPCCQRLFTCRLCHDQASDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCR--ALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
LRNTR S + ERL V+ GLG K +EMCRHLMTHLDKEEE ALPLIKHYFTG EM ALVGKIMGKRPTELMQ TIL+MMI NLP +EV TV+GYM+HAVKDTYFEKWLA+GGF+WPTN P N++A + G GA V AA + +C S AA+ S L A + + P +R G R G G E GV GG+ CPLD+EFEG++L G C R H I A+ R+ G SL DG R CSVC YIGRCPV++PL+Q EFE AVKRL+H++ +STERKS LVQ MRNHMYQ RKRPR PA AS S S P +T G P GEGG+ G+ +VAPA+YYTSTQPDIE++ G AA GT ++PP +FT E++APTYH + A G G A+ GGG G E VLGCPHYRRACK+RAPCCQ+LFTCRLCHDQ SDH VDR+EV EMLCMRC TLQP++SECRN SCR A G+ T ++MARYYCGICHLFDDAP KDIYHCPYCNVCRLGKGLGV
Sbjct: 341 LRNTRHSSVTERLEVVNGLGKKAEEMCRHLMTHLDKEEESALPLIKHYFTGPEMGALVGKIMGKRPTELMQ-----TILSMMINNLPEEEVRTVMGYMKHAVKDTYFEKWLASGGFQWPTNSAPSNSISRHSLKNSVAKMAGGGAVTKRIGGSGGGGAAWAGARGVVHRIGCAATGASTASCSGVGVDGGSCGHSPFHQAASRSSGALSADSSASGFAAMPAPTAATSAPQERRGGGGFKRQGAPLG-----EAAAGVGGGARRLDGCCPLDREFEGLSLRSGAASGAAAVDGEPRGCDSGRQHTI---------------AAEGGRIGGAGLSLGPGDGEERRDRSCSVCSYIGRCPVNEPLTQMEFESAVKRLAHVSDLSTERKSGLVQMMRNHMYQGRKRPR---PASNTASSSXXXXXXXSRPPFAT-GGAWPPPAGEGGAAGRPEV----PLVAPAKYYTSTQPDIEDS-GGAADGTS-VLPPTLFTPEELAPTYHC--SAPAGGGAPGDGADAKLGGGXXXXXGAEVAVLGCPHYRRACKIRAPCCQKLFTCRLCHDQVSDHKVDREEVTEMLCMRCETLQPINSECRNHSCRPAAAEGKPPCTG-RKMARYYCGICHLFDDAPEKDIYHCPYCNVCRLGKGLGV 953
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: A0A7S1XWB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWB5_9STRA) HSP 1 Score: 220 bits (561), Expect = 7.010e-59 Identity = 187/610 (30.66%), Postives = 259/610 (42.46%), Query Frame = 1
Query: 16 QSLPERLRVIVGLGSKTDEMCRHLMTHLDKEEEGALPLIKHYFTGQEMQALVGKIMGKRPTELMQARNSRTILAMMIKNLPPDEVWTVLGYMRHAVKDTYFEKWLAAGGFRWP-TNKVPNTLAFIHQQXXXXXXXXXXXXXGKTAPGAAAAVDGNASAAVAQGSRDNCFPSCVSYAATASCPPLEAGAEVARRPSKRVGKSMMLRNGKDRGQGEGGEDYYGVNGGSCPLDQEFEGMNLDGGGRFKPRPSPFGGIACKEARIHGIRKALGVRRTGDTKEGASFSARVNGSLDVSDGRLSSFRMCSVCKYIGRCPV--SQPLSQREFEVAVKR---------LSHMTGISTERKSELVQAMRNHMYQVRKRPRSGGPAVGPASQSSTSSLGLSGTPTSTLSGRDAPARGEGGSVGKGADGGAREMVAPARYYTSTQPDIENADGSAAAGTGGLIPPPMFTREDMAPTYHFLGAVSAAGETVNGGIGAEAGGGGGEGVVLGCPHYRRACKLRAPCCQRLFTCRLCHDQASDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
QS PE +++ LG + +L HLDKEE+GA+PL+K + +E++ALVG+IMGKR T +M +L M+++NLPP++ ++ ++RH+ + T+FE+WLA GGF + NK P A A G +A DG+ A + + F C Y SCP + + P V + ++ ED P+ P PSP G K GV + EG S SA S + + + C VC + CP SQ E+ V+R L G++ + SE++Q +RN + R RSG P +G S P + PA G + PA + AA F+ E++ T H LGCPHY+R KLRAPCC +L TCRLCHDQA DH ++R V+EMLCM CGTLQP+ C N C+ E ++ YYC +CHLFDD P K IYHCPYCNVCR G+GLG+
Sbjct: 158 QSSPEWGDLVLCLGRTAAAIVENLNEHLDKEEKGAMPLVKRLLSTEEIEALVGEIMGKRSTTMMTM-----LLRMVVRNLPPEDQRDMIKHLRHSAEGTFFERWLAHGGFVFDDNNKKPGGDA------------------ADGADGKSAGADGDI-AMRPRPTDSGAFTGCFCYN---SCPACSSAPKFVGEPDCDVAPAEVVE-----------EDAK-----PAPV-------------AVGPAPSPGGSEG----------KGDGVTGSAIAAEGGSASAST--SQFIPGMQPENPLTCVVCCAMDGCPAQSSQKPGATAEEIKVQRDQGLVRLVSLLKARGVTPLKTSEMLQKVRNSRWMNLARTRSGSSDGAPP-------VGQSPRPMKRQRRIETPA------------GMIPSTIHPAMHLVWNGEKYVEGPNDAA-----------FSIEEVCVTKH-------------------------PSQQLGCPHYKRKVKLRAPCCDKLVTCRLCHDQACDHMMNRFAVEEMLCMVCGTLQPVKGICANEKCKHSSPEEP------LSTYYCDVCHLFDDDPDKHIYHCPYCNVCRAGRGLGI 638
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: A0A835Z9Z4_9STRA (Zinc ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z4_9STRA) HSP 1 Score: 167 bits (423), Expect = 8.640e-44 Identity = 76/115 (66.09%), Postives = 85/115 (73.91%), Query Frame = 1
Query: 1465 VLGCPHYRRACKLRAPCCQRLFTCRLCHDQASDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
+LGCPHY+R KLRAPCC RLFTCRLCHDQ DHT+DR V EMLCM CG LQP+ C + +C + TAT ++RYYC ICHL DD KDIYHCPYCNVCRLGKGLGV
Sbjct: 1 MLGCPHYQRRTKLRAPCCGRLFTCRLCHDQVMDHTMDRYRVVEMLCMVCGALQPISGACAHAACPS--NSSTAT----LSRYYCAICHLHDDDASKDIYHCPYCNVCRLGKGLGV 109
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: W7TVL5_9STRA (Zinc finger protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVL5_9STRA) HSP 1 Score: 169 bits (428), Expect = 8.220e-41 Identity = 114/310 (36.77%), Postives = 144/310 (46.45%), Query Frame = 1
Query: 919 CSVCKYIGRCPVSQPLSQREFEVAVKRLSHMTGISTERKSELVQAMRNHMYQVRK-RPRSGGPAVGPASQSSTSSLGLSGTPTSTLSGRDAPARGEGGSVGKGADGGAREMVAPARYYTSTQPDIENADGS-----AAAGTGGLIPPPMFTRE------DMAPTYHFLGAVSAAGETVNGGIGAEAGGGGGEGVVLGCPHYRRACKLRAPCCQRLFTCRLCHDQA-SDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
C +C ++GRCP L +EFE AV+ ++ I KS+ VQ +R +Q ++ RP GP V T+ +GR P + + T P ++ GS AA +PPP D +P+Y + GE GC HYRRACKLRAPCC RL+ CRLCHDQA +DH +DR V E+ CMRCG LQP CRNP CR + + YYC IC L+DD GK IYHCPYCNVCRLGKGLG+
Sbjct: 424 CRMCGWVGRCPRESKLEPQEFEAAVRAIARDKSIGMIEKSKAVQTLRAAPWQQKRARP---GPTV-----------------TAGTAGRIHPPXXXXXXXXXXSTTFPSPSHHMVNHETPHAPGAKDHSGSSPSALAAPAVAAPLPPPHRPPSADTEALDRSPSY------TPTGE-------------------FGCMHYRRACKLRAPCCGRLYPCRLCHDQALTDHAMDRYAVAEICCMRCGELQPPARTCRNPHCRHV-----------FSAYYCDICRLYDDDVGKAIYHCPYCNVCRLGKGLGI 677
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: I2CRN7_NANGC (Zinc ion binding protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRN7_NANGC) HSP 1 Score: 153 bits (386), Expect = 8.490e-39 Identity = 70/111 (63.06%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1480 HYRRACKLRAPCCQRLFTCRLCHDQA-SDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
HYRRACKLRAPCC RL+ CRLCHDQA +DH +DR V E+ CMRCG LQP CRNP CR + + YYC IC L+DD GK IYHCPYCNVCRLGKGLG+
Sbjct: 2 HYRRACKLRAPCCGRLYPCRLCHDQALTDHAMDRYAVAEICCMRCGELQPPARTCRNPHCRHV-----------FSAYYCDICRLYDDDVGKAIYHCPYCNVCRLGKGLGI 101
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: A0A835XVX6_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XVX6_9CHLO) HSP 1 Score: 161 bits (407), Expect = 7.820e-38 Identity = 93/201 (46.27%), Postives = 108/201 (53.73%), Query Frame = 1
Query: 1207 GSVGKGADGGAREMVAPARYYTSTQPDIENADGSAAAGTGGLIPPPMFTREDMAPTYHFLGAVSAAGETVNGGIGAEAGGGGGEGVVLGCPHYRRACKLRAPCCQRLFTCRLCHDQASDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
GS G GADGG R + S+ P +A G+ AA T P T+H AAG VLGC HY+R C+L APCC ++FTCRLCHD+ASDH +DR V EM CM CG QP+ +CRA G MARY C ICHLFDD PGKDIYHCP+CNVCR G+GLGV
Sbjct: 1264 GSQGAGADGGCRACLCGELGPVSSPPAALSALGAVAAATHMRAP-------SHPQTWHN----EAAG-------------------VLGCQHYQRRCQLVAPCCDKIFTCRLCHDEASDHRMDRYAVSEMRCMLCGERQPVAG-----TCRACSGA--------MARYVCNICHLFDDEPGKDIYHCPFCNVCRRGRGLGV 1421
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: A0A7J7PIT3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PIT3_9CHLO) HSP 1 Score: 158 bits (399), Expect = 7.100e-37 Identity = 72/115 (62.61%), Postives = 83/115 (72.17%), Query Frame = 1
Query: 1465 VLGCPHYRRACKLRAPCCQRLFTCRLCHDQASDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
VLGC HYRR+ +L APCC +++TCRLCHD+ASDH +DR V EM+CM CGT QP+ C SC A MA YYCGICHLFDD PG+DIYHCP+CNVCR GKGLGV
Sbjct: 981 VLGCKHYRRSAQLVAPCCGKVYTCRLCHDEASDHRLDRCAVSEMVCMLCGTRQPVGGSC--CSCSA-----------SMAGYYCGICHLFDDEPGRDIYHCPFCNVCRRGKGLGV 1082
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: A0A7S1GIX4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GIX4_CYCTE) HSP 1 Score: 149 bits (375), Expect = 1.890e-36 Identity = 77/163 (47.24%), Postives = 94/163 (57.67%), Query Frame = 1
Query: 1342 PMFTREDMAPTYHFLGAVSAAGETVNGGIGAEAGGGGGEGVVLGCPHYRRACKLRAPCCQRLFTCRLCHDQA-------SDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
P+FT ++APTYH + NGG VLGCPHY R+CKLR P RL+TCRLC Q D +DR VKE+LCMRC TLQP + +C N +C + R A+YYC ICHL+DD P K IYHCP+CNVCR G+GLG+
Sbjct: 52 PLFTAAELAPTYH---------DGANGG-------------VLGCPHYSRSCKLRHPTSGRLYTCRLCCAQERENPLKEQDSPLDRYAVKEILCMRCTTLQPANEKCINQAC--------DSKGARFAKYYCQICHLYDDDPEKQIYHCPFCNVCRSGRGLGI 184
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: A0A2K3DRZ9_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DRZ9_CHLRE) HSP 1 Score: 157 bits (396), Expect = 2.120e-36 Identity = 71/117 (60.68%), Postives = 83/117 (70.94%), Query Frame = 1
Query: 1459 GVVLGCPHYRRACKLRAPCCQRLFTCRLCHDQASDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
G VLGC HY+R C+L APCC ++TCRLCHD+A+DH +DR V EM CM CG QP+ + CR +C A MARYYC ICHLFDD PGKDIYHCP+CNVCR G+GLGV
Sbjct: 1709 GGVLGCGHYQRKCQLVAPCCGGVYTCRLCHDEAADHRMDRYAVSEMRCMSCGERQPVAAACR--ACAA-----------NMARYYCNICHLFDDEPGKDIYHCPFCNVCRRGRGLGV 1812
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Match: D8TUF3_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TUF3_VOLCA) HSP 1 Score: 156 bits (394), Expect = 3.030e-36 Identity = 70/115 (60.87%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 1465 VLGCPHYRRACKLRAPCCQRLFTCRLCHDQASDHTVDRQEVKEMLCMRCGTLQPMHSECRNPSCRALRGERTATNIKRMARYYCGICHLFDDAPGKDIYHCPYCNVCRLGKGLGV 1809
+LGC HY+R C+L APCC ++FTCRLCHD ASDH +DR V EM CM CGT QP+ + CR S MARY C ICHLFDD PGKDIYHCP+CNVCR G+GLGV
Sbjct: 967 ILGCQHYQRKCQLVAPCCGKIFTCRLCHDAASDHRMDRYAVTEMRCMMCGTRQPVGAVCRCCS-------------TTMARYVCNICHLFDDEPGKDIYHCPFCNVCRRGRGLGV 1068 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5026.12278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5026.12278.1 >prot_H-paniculata_contig5026.12278.1 ID=prot_H-paniculata_contig5026.12278.1|Name=mRNA_H-paniculata_contig5026.12278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=603bp LRNTRQSLPERLRVIVGLGSKTDEMCRHLMTHLDKEEEGALPLIKHYFTGback to top mRNA from alignment at H-paniculata_contig5026:242..12515+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5026.12278.1 ID=mRNA_H-paniculata_contig5026.12278.1|Name=mRNA_H-paniculata_contig5026.12278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12274bp|location=Sequence derived from alignment at H-paniculata_contig5026:242..12515+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5026:242..12515+ >mRNA_H-paniculata_contig5026.12278.1 ID=mRNA_H-paniculata_contig5026.12278.1|Name=mRNA_H-paniculata_contig5026.12278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3618bp|location=Sequence derived from alignment at H-paniculata_contig5026:242..12515+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |