prot_H-paniculata_contig5024.12275.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5024.12275.1
Unique Nameprot_H-paniculata_contig5024.12275.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length70
Homology
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BLAST of mRNA_H-paniculata_contig5024.12275.1 vs. uniprot
Match: D8LSF5_ECTSI (Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.820e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:    1 KLNKLPEVKAFLTYPEHALSYENIQVDFVRGKAPVLFIHDADSGEVEESINLENLKIDEVNHIELTQG 68
            KLNKLPE K FL  PEHA SYE+I+V+F  GK PVL + D  SGE  ESINLE   IDE++ + +++G
Sbjct:   39 KLNKLPEAKKFLKNPEHAASYEDIEVEFKAGKPPVLTLFDKASGEETESINLEKFTIDEMHELLVSRG 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5024.12275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSF5_ECTSI2.820e-1557.35Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014912Selenoprotein F/M domainPFAMPF08806Sep15_SelMcoord: 1..62
e-value: 7.6E-15
score: 54.8
IPR038219Selenoprotein F/M superfamilyGENE3D3.40.30.50coord: 1..70
e-value: 6.1E-12
score: 47.4
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 1..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5024contigH-paniculata_contig5024:2743..2952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5024.12275.1mRNA_H-paniculata_contig5024.12275.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5024 2743..2952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5024.12275.1 ID=prot_H-paniculata_contig5024.12275.1|Name=mRNA_H-paniculata_contig5024.12275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
KLNKLPEVKAFLTYPEHALSYENIQVDFVRGKAPVLFIHDADSGEVEESI
NLENLKIDEVNHIELTQGLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014912Sep15_SelM_dom
IPR038219Sep15/SelM_sf
IPR036249Thioredoxin-like_sf