mRNA_H-paniculata_contig5024.12275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5024.12275.1
Unique NamemRNA_H-paniculata_contig5024.12275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5024.12275.1 vs. uniprot
Match: D8LSF5_ECTSI (Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF5_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 2.820e-15
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 KLNKLPEVKAFLTYPEHALSYENIQVDFVRGKAPVLFIHDADSGEVEESINLENLKIDEVNHIELTQG 204
            KLNKLPE K FL  PEHA SYE+I+V+F  GK PVL + D  SGE  ESINLE   IDE++ + +++G
Sbjct:   39 KLNKLPEAKKFLKNPEHAASYEDIEVEFKAGKPPVLTLFDKASGEETESINLEKFTIDEMHELLVSRG 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5024.12275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSF5_ECTSI2.820e-1557.35Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5024contigH-paniculata_contig5024:2743..2952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionselenoprotein M
Ec32 orthologEc-21_003500.1
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.7673843-CDS-H-paniculata_contig5024:2742..29521622930477.7673843-CDS-H-paniculata_contig5024:2742..2952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5024 2743..2952 -
1691481309.4985833-CDS-H-paniculata_contig5024:2742..29521691481309.4985833-CDS-H-paniculata_contig5024:2742..2952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5024 2743..2952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5024.12275.1prot_H-paniculata_contig5024.12275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5024 2743..2952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5024.12275.1

>prot_H-paniculata_contig5024.12275.1 ID=prot_H-paniculata_contig5024.12275.1|Name=mRNA_H-paniculata_contig5024.12275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
KLNKLPEVKAFLTYPEHALSYENIQVDFVRGKAPVLFIHDADSGEVEESI
NLENLKIDEVNHIELTQGLR
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mRNA from alignment at H-paniculata_contig5024:2743..2952-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5024.12275.1 ID=mRNA_H-paniculata_contig5024.12275.1|Name=mRNA_H-paniculata_contig5024.12275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig5024:2743..2952- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTAAACAAGCTCCCAGAGGTTAAGGCGTTCCTCACGTATCCCGAGCA
CGCCCTGAGCTACGAGAACATTCAGGTTGACTTTGTGCGAGGGAAGGCGC
CTGTGTTGTTCATTCATGACGCCGACTCCGGGGAGGTCGAGGAATCCATC
AACCTCGAGAATTTGAAAATTGACGAGGTAAATCATATTGAGTTGACTCA
AGGTCTGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5024:2743..2952-

>mRNA_H-paniculata_contig5024.12275.1 ID=mRNA_H-paniculata_contig5024.12275.1|Name=mRNA_H-paniculata_contig5024.12275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig5024:2743..2952- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTAAACAAGCTCCCAGAGGTTAAGGCGTTCCTCACGTATCCCGAGCA
CGCCCTGAGCTACGAGAACATTCAGGTTGACTTTGTGCGAGGGAAGGCGC
CTGTGTTGTTCATTCATGACGCCGACTCCGGGGAGGTCGAGGAATCCATC
AACCTCGAGAATTTGAAAATTGACGAGGTAAATCATATTGAGTTGACTCA
AGGTCTGAGGAAATTAAACAAGCTCCCAGAGGTTAAGGCGTTCCTCACGT
ATCCCGAGCACGCCCTGAGCTACGAGAACATTCAGGTTGACTTTGTGCGA
GGGAAGGCGCCTGTGTTGTTCATTCATGACGCCGACTCCGGGGAGGTCGA
GGAATCCATCAACCTCGAGAATTTGAAAATTGACGAGGTAAATCATATTG
AGTTGACTCAAGGTCTGAGG
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