mRNA_H-paniculata_contig50232.12274.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50232.12274.1
Unique NamemRNA_H-paniculata_contig50232.12274.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A1M2VH23_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VH23_TRAPU)

HSP 1 Score: 84.3 bits (207), Expect = 1.670e-18
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVD 372
            EP+   EAQASP+W HW+ A   E+  L ++  +  VE P N  +V +  +++ K   EG + +YK  LVA G  Q+ GI + E  +P   +AS + +L+LAA  DWEL  +D
Sbjct:   12 EPRTLAEAQASPDWPHWENAIAKEIDNLRKHDTYDLVEPPHNTNIVGSRFVFRIKRDAEGSITQYKARLVAQGFTQMPGIDFNETFAPVAKLASIRTILALAARYDWELEQMD 124          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A443PJ17_9MAGN (Copia protein gag-int-pol protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PJ17_9MAGN)

HSP 1 Score: 85.9 bits (211), Expect = 5.500e-17
Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVD 372
            EPK+ +EA     W H   A + E++ L +NG WT    P  K  + +  +YK K   +G +E++K CLV +GN QI GI Y E  +P   + + +  L++AA ++WEL  +D
Sbjct:  811 EPKSFKEAMTDVGWRH---AMQTEIRALEDNGTWTMETLPPGKRALGSQWVYKIKYNSDGSIERFKACLVVFGNHQIAGIDYNETFAPVAKMVTVRAFLAIAASKNWELHQMD 920          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 84.3 bits (207), Expect = 1.920e-16
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   49 QEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVDF 375
            +EA+  P+W HWQ A   E+  L   G WT V  P  + VV    + + K    G++EKYK  LVA G  Q++G+ Y E  +P   +AS ++VL++AA  DW++   DF
Sbjct: 1066 EEARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDF 1174          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 79.7 bits (195), Expect = 3.470e-16
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   79 HWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVD 372
            HW+ A + E + L + G W  V  P+N+ V+ +  +YK K  ++GKV +YK  LVA G  Q  G+ Y E  SP     + ++VLSLAA+  W+LR +D
Sbjct:   64 HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLEYDETFSPVVRHTTVRLVLSLAAMNKWDLRQLD 161          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A8I6XHP4_HORVV (Uncharacterized protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XHP4_HORVV)

HSP 1 Score: 81.6 bits (200), Expect = 1.630e-15
Identity = 44/113 (38.94%), Postives = 64/113 (56.64%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVD 372
            EP N  EA  SP W H   A + EM+ +  NG WT V  P N+  V    +YK K   +G + KYK  LVA G  Q +G+ Y E  +P   + + +++L+LAA +DW++ H+D
Sbjct:  669 EPANFVEASKSPSWTH---AMDEEMKAIESNGTWTLVTRPPNQKTVGLKWVYKLKKDTKGAIVKYKARLVAKGYVQRQGVDYDEVFAPVARIETVRVLLALAAQEDWKVHHMD 778          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 79.7 bits (195), Expect = 7.540e-15
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   46 HQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVDFE 378
            ++EA A PE E W+ A E E+ ++   G +  VE PK   VV  + + ++K  E  +V K+K  L A G  Q+ G+ Y + ++P   +AS ++VL+LAA  DWE+  +DF+
Sbjct:  223 YREAMAGPESEDWRVAMEEELAKIEAMGTYELVEKPKGANVVGCVWVLRKKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFK 333          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY)

HSP 1 Score: 79.3 bits (194), Expect = 1.070e-14
Identity = 40/111 (36.04%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   46 HQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVDFE 378
            ++EA A PE + W+ A + E+ ++   G +  VE PK+  +V ++ + K+K  E   V K+K  L A G  Q+ GI Y E ++P  +++S ++VL+LAA  DWE+  +DF+
Sbjct:  719 YREAMAGPECDDWKIAMQEELAKIEAMGTYELVEPPKDVNIVGSVWVLKKKRDEHNNVAKFKARLCAQGFSQVYGIDYVETAAPTASLSSLRLVLALAAANDWEIHQIDFK 829          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 79.0 bits (193), Expect = 1.460e-14
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   31 VEPKNHQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVD 372
            +EP  + EA+   +WE W +A + +M  L+    W  V+ P  +  + +  +YK K+ EEGK +++K  LVA G  Q+ G+ Y E  +P   + S +++L+LAA   W +  VD
Sbjct:  730 LEPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVD 843          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A151S309_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S309_CAJCA)

HSP 1 Score: 78.2 bits (191), Expect = 2.630e-14
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   76 EHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELRHVD 372
            E W+RA E E+  L  NG WT V  P   + +    +YK K   +G +E+YK  LVA G  QI+G+ Y +  SP   + + ++VL+LAA+Q+W +  +D
Sbjct:  273 ECWKRAMEAEISALENNGTWTLVHLPPGIISIGNKWVYKIKTRSDGTIERYKARLVAKGYTQIEGLDYLDTFSPVAKLTTIRVVLALAAMQNWHIHQLD 371          
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 78.2 bits (191), Expect = 2.660e-14
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   34 EPKNHQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVECPKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPAPAVASTKMVLSLAAIQDWELR 363
            EP ++++A +S    HW+ A + E + L + G W  V  P+N+ V+ +  +YK K  ++GKV +YK  LVA G  Q  G+ Y+E  SP     + ++VLSLAA+  W+LR
Sbjct:  615 EPTHYKQAVSSV---HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQEHGLDYEETFSPVVRHTTVRLVLSLAAMNKWDLR 721          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50232.12274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2VH23_TRAPU1.670e-1838.94Retrovirus-related Pol polyprotein from transposon... [more]
A0A443PJ17_9MAGN5.500e-1736.28Copia protein gag-int-pol protein n=1 Tax=Cinnamom... [more]
A0A146H565_MYCCL1.920e-1638.53Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A540NMU0_MALBA3.470e-1639.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8I6XHP4_HORVV1.630e-1538.94Uncharacterized protein n=1 Tax=Hordeum vulgare su... [more]
A0A8H7NVE6_9APHY7.540e-1536.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7TXH5_9APHY1.070e-1436.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U1E5_9BASI1.460e-1433.33Integrase catalytic domain-containing protein n=2 ... [more]
A0A151S309_CAJCA2.630e-1438.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N5FUF0_9ROSA2.660e-1438.18Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50232contigH-paniculata_contig50232:862..1242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score88.6
Seed ortholog evalue2.3e-15
Seed eggNOG ortholog28532.XP_010532348.1
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K12447
KEGG ReactionR00289,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003983,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006011,GO:0006082,GO:0006139,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009225,GO:0009226,GO:0009555,GO:0009987,GO:0010035,GO:0010038,GO:0010491,GO:0016740,GO:0016772,GO:0016779,GO:0017103,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0033356,GO:0034641,GO:0034654,GO:0042221,GO:0042995,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046398,GO:0046483,GO:0046686,GO:0047338,GO:0047350,GO:0048229,GO:0048856,GO:0050896,GO:0051748,GO:0052573,GO:0055086,GO:0070569,GO:0071704,GO:0090406,GO:0120025,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.udp-sugar
EggNOG OGs37MVU@33090,3GGIU@35493,3HSQP@3699,COG2801@1,COG4284@1,KOG0017@2759,KOG2388@2759
EC2.7.7.64
COG Functional cat.M
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size381
Cds size381
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930477.71805-CDS-H-paniculata_contig50232:861..12421622930477.71805-CDS-H-paniculata_contig50232:861..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50232 862..1242 +
1691481309.483479-CDS-H-paniculata_contig50232:861..12421691481309.483479-CDS-H-paniculata_contig50232:861..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50232 862..1242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50232.12274.1prot_H-paniculata_contig50232.12274.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50232 862..1242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50232.12274.1

>prot_H-paniculata_contig50232.12274.1 ID=prot_H-paniculata_contig50232.12274.1|Name=mRNA_H-paniculata_contig50232.12274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MPEELRSDLPVEPKNHQEAQASPEWEHWQRAEEVEMQRLIENGAWTQVEC
PKNKLVVSTMMMYKRKIGEEGKVEKYKCCLVAYGNRQIKGIHYQEASSPA
PAVASTKMVLSLAAIQDWELRHVDFE*
back to top

mRNA from alignment at H-paniculata_contig50232:862..1242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50232.12274.1 ID=mRNA_H-paniculata_contig50232.12274.1|Name=mRNA_H-paniculata_contig50232.12274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig50232:862..1242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGAAGCGACCTCCCCGTGGAACCCAAGAATCACCA GGAGGCGCAGGCGTCGCCGGAATGGGAACACTGGCAAAGAGCAGAGGAAG TCGAGATGCAACGCCTCATCGAAAACGGGGCTTGGACGCAAGTGGAGTGC CCGAAGAATAAGCTGGTCGTGAGCACGATGATGATGTACAAAAGGAAAAT CGGCGAGGAGGGAAAAGTGGAGAAATATAAGTGCTGTCTGGTCGCCTACG GAAACCGTCAGATCAAGGGCATCCACTACCAGGAAGCTTCGTCCCCTGCA CCAGCAGTGGCCAGCACAAAAATGGTGTTGTCGCTTGCGGCAATCCAGGA CTGGGAGCTACGGCACGTCGACTTTGAATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig50232:862..1242+

>mRNA_H-paniculata_contig50232.12274.1 ID=mRNA_H-paniculata_contig50232.12274.1|Name=mRNA_H-paniculata_contig50232.12274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig50232:862..1242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCGAAGAACTGAGAAGCGACCTCCCCGTGGAACCCAAGAATCACCA
GGAGGCGCAGGCGTCGCCGGAATGGGAACACTGGCAAAGAGCAGAGGAAG
TCGAGATGCAACGCCTCATCGAAAACGGGGCTTGGACGCAAGTGGAGTGC
CCGAAGAATAAGCTGGTCGTGAGCACGATGATGATGTACAAAAGGAAAAT
CGGCGAGGAGGGAAAAGTGGAGAAATATAAGTGCTGTCTGGTCGCCTACG
GAAACCGTCAGATCAAGGGCATCCACTACCAGGAAGCTTCGTCCCCTGCA
CCAGCAGTGGCCAGCACAAAAATGGTGTTGTCGCTTGCGGCAATCCAGGA
CTGGGAGCTACGGCACGTCGACTTTGAATAAATGCCCGAAGAACTGAGAA
GCGACCTCCCCGTGGAACCCAAGAATCACCAGGAGGCGCAGGCGTCGCCG
GAATGGGAACACTGGCAAAGAGCAGAGGAAGTCGAGATGCAACGCCTCAT
CGAAAACGGGGCTTGGACGCAAGTGGAGTGCCCGAAGAATAAGCTGGTCG
TGAGCACGATGATGATGTACAAAAGGAAAATCGGCGAGGAGGGAAAAGTG
GAGAAATATAAGTGCTGTCTGGTCGCCTACGGAAACCGTCAGATCAAGGG
CATCCACTACCAGGAAGCTTCGTCCCCTGCACCAGCAGTGGCCAGCACAA
AAATGGTGTTGTCGCTTGCGGCAATCCAGGACTGGGAGCTACGGCACGTC
GACTTTGAATAA
back to top