mRNA_H-paniculata_contig502.12269.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig502.12269.1 vs. uniprot
Match: A0A6H5KXR6_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR6_9PHAE) HSP 1 Score: 176 bits (446), Expect = 6.070e-41 Identity = 113/253 (44.66%), Postives = 139/253 (54.94%), Query Frame = 1
Query: 2101 NFIPKFVPSPNAWWILSNKA--EAPPTAQTKXXXXXXXXXXXXXXXXXXXXXXFYSSADRG------------DDLDGDEVDEYHAFFDVPLLVTPIPPPPEMEVTVNRRSGTPVEAAAXXXXXXXXXXXXESTNLLEEWVDGDPVNSSGGEPQQQASSSSRVKRSPRTPRPPSDLVGLAAEMRFVELACYAGLSSAAGKSAGLVMKEQLGFDILLRGLRADVRPNLRRRALQAISTLIDNDASLAPCLLGID 2817
+FIPKF P PNAW ILS+K+ E P + D+ DD DG+E DE+ F D+PL VT IP PP+ME+T+NR SGTP A +S N+LEEWVDG+PV G R+ S + RP L G + EM+ VE+AC GLSS AGKSAG +M E+LGF LLRGLR DVRP+L+RR LQAIST+ID+D SLAP LLG+D
Sbjct: 346 HFIPKFAPPPNAWKILSSKSPVETPKASDQSGDRSPGGSPALPSSSSVPYGSGGVVGQDKREGGSSEGSAVDIDDDDGEEHDEFRDFGDLPLSVTSIPKPPDMEITINRSSGTPANAETRPAAAAAAKAAADSDNVLEEWVDGEPVQVHHG----------RMTSSWKPTRP-DGLSGTSGEMKLVEMACLTGLSSRAGKSAGRIMLEELGFGHLLRGLRGDVRPSLQRRVLQAISTVIDSDPSLAPILLGLD 587
BLAST of mRNA_H-paniculata_contig502.12269.1 vs. uniprot
Match: D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI) HSP 1 Score: 176 bits (446), Expect = 6.910e-41 Identity = 115/255 (45.10%), Postives = 142/255 (55.69%), Query Frame = 1
Query: 2101 NFIPKFVPSPNAWWILSNKAE----------------APPTAQTKXXXXXXXXXXXXXXXXXXXXXXFYSSADRGDDLDGDEVDEYHAFFDVPLLVTPIPPPPEMEVTVNRRSGTPVEAAAXXXXXXXXXXXXESTNLLEEWVDGDPVNSSGGEPQQQASSSSRVKRSPRTPRPPSDLVGLAAEMRFVELACYAGLSSAAGKSAGLVMKEQLGFDILLRGLRADVRPNLRRRALQAISTLIDNDASLAPCLLGID 2817
+FIPKF P PNAW ILS+K+ APP++ S+AD DD DG+E DE+ F D+PL VT IP PP+ME+T+NR SGTP A +S N+LEEWVDG+PV G R+ S + RP L G + EM+ VE+AC GLSS AGKSAG +M E+LGF LLRGLR DVRP+L+RR LQAIST+ID+D SLAP LG+D
Sbjct: 467 HFIPKFAPPPNAWKILSSKSPVEEPKASDQSGDRSPAAPPSSSVPSGSVGAVGQDKWEGGSSEG-----SAADIDDD-DGEEHDEFRDFGDLPLSVTSIPRPPDMEITINRSSGTPANAETRPAAAAAAKAAADSDNVLEEWVDGEPVEVHRG----------RMTSSWKPTRP-DGLSGTSGEMKLVEMACLTGLSSRAGKSAGRIMLEELGFSHLLRGLRGDVRPSLQRRVLQAISTVIDSDPSLAPHFLGLD 704 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig502.12269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig502.12269.1 >prot_H-paniculata_contig502.12269.1 ID=prot_H-paniculata_contig502.12269.1|Name=mRNA_H-paniculata_contig502.12269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1194bp MFSVCTAKFANGFSHNHHNSSDRGYQYFRRRTSIRRKGRKLMLQLVAALSback to top mRNA from alignment at H-paniculata_contig502:18753..35860+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig502.12269.1 ID=mRNA_H-paniculata_contig502.12269.1|Name=mRNA_H-paniculata_contig502.12269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17108bp|location=Sequence derived from alignment at H-paniculata_contig502:18753..35860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig502:18753..35860+ >mRNA_H-paniculata_contig502.12269.1 ID=mRNA_H-paniculata_contig502.12269.1|Name=mRNA_H-paniculata_contig502.12269.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=7164bp|location=Sequence derived from alignment at H-paniculata_contig502:18753..35860+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |