mRNA_H-paniculata_contig5019.12266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5019.12266.1
Unique NamemRNA_H-paniculata_contig5019.12266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: D7G3Q7_ECTSI (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q7_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 9.790e-36
Identity = 67/89 (75.28%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            L+LVLD++YR   +DL+K E RLVFADPG ERQ SVYNALQKV+  +SLVCIHDAARPLVTK+ V+KVI+DA+E+GAAVLGVPMKATVK
Sbjct:  105 LILVLDEQYRPMLQDLQKREGRLVFADPGLERQHSVYNALQKVEDGSSLVCIHDAARPLVTKAAVKKVIADADEYGAAVLGVPMKATVK 193
[Close]
BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A835YTP8_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTP8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.750e-34
Identity = 61/89 (68.54%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            ++LV+D++YRD F+ +++ E RLVFADPG ERQ+SV+N LQ V   AS+VCIHDAARPLVTK C+ +V+ DAEEHGAAVLGVPMKATVK
Sbjct:   97 IILVIDQQYRDQFKTMQEEEPRLVFADPGIERQNSVFNGLQAVHEGASVVCIHDAARPLVTKECIYQVLRDAEEHGAAVLGVPMKATVK 185
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BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A7S2V2L3_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2L3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 7.500e-31
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            ++LVLD++YR  ++ +   E RL FADPGKERQDSV N L  V   ASLVC+HDAARPLVT   + +VI+DAEEHGAAVLGVPMKATVK
Sbjct:  113 IILVLDEQYRPNYQSVSDEEPRLKFADPGKERQDSVCNGLSLVGEGASLVCVHDAARPLVTPENIHQVIADAEEHGAAVLGVPMKATVK 201
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BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A7S2DHR1_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DHR1_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.070e-29
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            +VLV+D +Y   FE L+    +L+FA PGKERQDSV+N LQK++ +A +VCIHDAARPL+T   + KV+ D  EHGAAVLGVPMKATVK
Sbjct:  115 VVLVIDAKYESQFEPLQALNPKLIFAPPGKERQDSVFNGLQKINDDAPVVCIHDAARPLITPEAIYKVLRDGIEHGAAVLGVPMKATVK 203
[Close]
BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: W7TNV7_9STRA (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNV7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.170e-28
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            +V+VLDK YR  F  L++ + R+VFADPGKERQDSV+N   +  P+AS+VCIHD+ARPLV++S V   + D   HGAAVLGVPMKATVK
Sbjct:  130 IVIVLDKSYRQEFSFLQEEDPRIVFADPGKERQDSVFNGFSQTLPDASVVCIHDSARPLVSQSAVLASLRDGSVHGAAVLGVPMKATVK 218
[Close]
BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A7S3EJ10_9RHOD (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJ10_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 2.050e-28
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDP-EASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            +VLV+D+ Y + + DL   +++L FA PGKERQDSVYN LQK    +A L+C+HDAARPLVT   +RKV++DAE HGAAVLGVP KATVK
Sbjct:  106 VVLVVDESYHEDYADLSGGDRQLHFASPGKERQDSVYNGLQKATVNDAGLICVHDAARPLVTPEEIRKVLNDAETHGAAVLGVPCKATVK 195
[Close]
BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A7S0Y4H2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y4H2_HEMAN)

HSP 1 Score: 110 bits (274), Expect = 5.480e-28
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            + +V+ +EYRD F+D+ K + R+ FA PGKERQDSV+N LQ+V   A+LV +HDAARPLVT   V  V  DA+EHGAAVL VPMKATVK
Sbjct:  129 ITIVIAEEYRDMFDDIVKKDDRIRFAGPGKERQDSVFNGLQQVPDSATLVAVHDAARPLVTPEEVYNVFRDAKEHGAAVLAVPMKATVK 217
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BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A7S0VEW7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VEW7_9CRYP)

HSP 1 Score: 110 bits (274), Expect = 1.130e-27
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            + +V+ +EYRD F+D+ K++ R+ FA PGKERQDSV+N LQ+V   A LV +HDAARPLVT   V  V  DA+EHGAAVL VPMKATVK
Sbjct:  106 ITIVIAEEYRDMFDDIVKADDRIRFAGPGKERQDSVFNGLQQVPESAKLVAVHDAARPLVTPEEVYNVFRDAKEHGAAVLAVPMKATVK 194
[Close]
BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A7S4UD44_GUITH (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UD44_GUITH)

HSP 1 Score: 110 bits (274), Expect = 2.930e-27
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            +V+V+  EYRD   D+ K + R+ FA+PGKERQDSV+N LQ+   + SL+CIHDAARPLVT+  +   ++DA EHGAAVL VPMKATVK
Sbjct:  138 IVIVIAPEYRDSLADVTKKDARICFAEPGKERQDSVFNGLQETALDTSLICIHDAARPLVTEQEILSCMNDALEHGAAVLAVPMKATVK 226
[Close]
BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Match: A0A1S3UW16_VIGRR (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=8 Tax=Vigna TaxID=3913 RepID=A0A1S3UW16_VIGRR)

HSP 1 Score: 109 bits (273), Expect = 3.770e-27
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 LVLVLDKEYRDGFEDLRKS-EKRLVFADPGKERQDSVYNALQKVDPEASLVCIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK 267
            +V+V D  YRD FED + + E  L FA PGKERQDSVYN LQ VDP + LVCIHD+ARPLV  S VRKV++D   +GAAVLGVP+KAT+K
Sbjct:  127 VVVVCDPSYRDVFEDAKGNYEAELKFALPGKERQDSVYNGLQAVDPSSELVCIHDSARPLVLSSDVRKVLTDGLLNGAAVLGVPVKATIK 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5019.12266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Q7_ECTSI9.790e-3675.282-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A835YTP8_9STRA1.750e-3468.542-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7S2V2L3_9STRA7.500e-3166.292-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7S2DHR1_9STRA2.070e-2961.802-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
W7TNV7_9STRA1.170e-2861.802-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7S3EJ10_9RHOD2.050e-2862.222-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A7S0Y4H2_HEMAN5.480e-2861.80Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0VEW7_9CRYP1.130e-2761.80Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4UD44_GUITH2.930e-2759.552-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A1S3UW16_VIGRR3.770e-2764.442-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5019contigH-paniculata_contig5019:12181..14031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.4e-29
Seed eggNOG ortholog2880.D7G3Q7
Preferred nameCMS
KEGG rclassRC00002
KEGG koko:K00991
KEGG ReactionR05633
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046490,GO:0050518,GO:0070567,GO:0071704,GO:0090407,GO:1901135,GO:1901576
EggNOG free text desc.D-ribitol-5-phosphate cytidylyltransferase activity
EggNOG OGs2QUUE@2759,COG1211@1
EC2.7.7.60
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size267
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5019.12266.1prot_H-paniculata_contig5019.12266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5019 12181..14031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.5098832-CDS-H-paniculata_contig5019:12180..122691622930476.5098832-CDS-H-paniculata_contig5019:12180..12269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5019 12181..12269 +
1691481308.8508563-CDS-H-paniculata_contig5019:12180..122691691481308.8508563-CDS-H-paniculata_contig5019:12180..12269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5019 12181..12269 +
1622930476.527638-CDS-H-paniculata_contig5019:13103..132151622930476.527638-CDS-H-paniculata_contig5019:13103..13215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5019 13104..13215 +
1691481308.863551-CDS-H-paniculata_contig5019:13103..132151691481308.863551-CDS-H-paniculata_contig5019:13103..13215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5019 13104..13215 +
1622930476.539461-CDS-H-paniculata_contig5019:13965..140311622930476.539461-CDS-H-paniculata_contig5019:13965..14031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5019 13966..14031 +
1691481308.8727088-CDS-H-paniculata_contig5019:13965..140311691481308.8727088-CDS-H-paniculata_contig5019:13965..14031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5019 13966..14031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5019.12266.1

>prot_H-paniculata_contig5019.12266.1 ID=prot_H-paniculata_contig5019.12266.1|Name=mRNA_H-paniculata_contig5019.12266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
LVLVLDKEYRDGFEDLRKSEKRLVFADPGKERQDSVYNALQKVDPEASLV
CIHDAARPLVTKSCVRKVISDAEEHGAAVLGVPMKATVK
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mRNA from alignment at H-paniculata_contig5019:12181..14031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5019.12266.1 ID=mRNA_H-paniculata_contig5019.12266.1|Name=mRNA_H-paniculata_contig5019.12266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1851bp|location=Sequence derived from alignment at H-paniculata_contig5019:12181..14031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTTCTCGTGTTGGACAAAGAATACCGCGACGGTTTCGAAGATCTGCG
GAAATCAGAGAAGCGGCTTGTGTTCGCCGACCCTGGAAAGTGAGTGCTGT
AACATATACGGAGTATACCCTTTTAGCGCCTTTTGAAGTTGAGCTAAGTT
AATTTATGAGGCTATTTCCGAAAACAAAAGTCACCAAATAACGAATCTGG
AATGCTGCAATCTCTGTGGCAGGATGGTGCCAGCTTCAGTACATTTCTAT
GCTGTCTGTACTTGGTGAGTTGTCGATGCCGAACTGTCTATACTGGACTG
TCTGCACAACGGCTGTACAGTCGTGACTCCGCTATGAGACGGCCCCCCGC
GATGTGGCGATCAATATCGGTTGTCACGACTCCGACCCACAATCGTGCGG
TCACTGCGTTACGCGGGGATCGGTGCTTCAATAGCAGACCTCTCTCTTGC
CGACGATCACGCGCGGCGTCGTGGTGGTTCACGGTAGGGGTGGCAAATTC
TGAAGGGAGCGATGTAGCAGCATGAGGGAACGTGTTTAGTGACATCCTTG
GTAACTTTTTTTTTCACGCCTCGGTATTTGTCGAAACCTTTTTGTATGGA
TCGACAGCTTTGGATCCTTCAGGTCTTGGTGAAGTTTTCAATTGTAGAAT
ATGACTGCACCCATACACATTTTTTTTCGCAACACTGTGAAGGTTGAGGA
AGGGTTGAGGGTTTCATGAAGGTATTCACACTTGAAAATGAAGGCTCGAT
CCGAAGTATGTCGTTTTCTGTAGGAGTTTGCCTCGTTGTTGGAATGCCTA
GTGCCTTTGTCGTAGTCCATTTCCATTCACTTAGTTTCTGTGCTGCTGTT
GCTGCGCTTCTTATCGAGGCGTTGCCTCTGACTTCGTTGTGGGTTTTTTT
CCCCCGTGTTGTCGTAAACCCAGAGAGCGTCAGGACTCCGTCTACAATGC
GTTACAGAAGGTGGATCCTGAGGCATCGCTGGTGTGCATACATGACGCAG
CCAGGCCACTCGTGACCAAGTCGTGCGTGCGGAAGGTAATAATGCGAACA
TACACCTTTTGATATTTTTATCGTTTAGTTTTGAAAAAAAAAAATTGAAA
CCCTTGAATATTCCATTACTATTTTTTCGAACTAAAGAAGTAAATTACAG
GAAGAAAACAAGAGCAACGTAAAAAGACGTGAAATATGGTTCGATGGAAA
AATAAAGGTTAGATCACTTCTTATCATGGCGTTTTGGTGTTGACTCTGTT
CTTACCAAAGTTCGGCTTACATTTCCTTCCTTCTTACAAGTATTTTCCTA
GGGTCATGTCCTACTCCCTATCCCTCGTTACACGGGTCTCTCCCTAACCC
CCGTTGCACGGGTTTACATGTATACGTTAAACCGTCCACTCCAAAGATCG
TTCGGGTACCCCCCTTGTCGGGGCCCCCCTTGGCCCCGCAGACGTTATAG
AATTGTGATTCTTCACTGCGGAAACAAACCCTAGTATGCACAGGCGTATG
TATGTGTGCACAAAAAGATTAGCCCCCATGTTGTTGGTCGCCAGGTAAAG
TCGAGTGGGCGACGTTAGGAGTTTGCGACACATGTCGGGTCACGGCGATG
TCGTCGATGAATGCTTGGGATGCGATTTTTGTACTTGATCTTGTCGATTG
CGCGGCCGTTGCACGTGCTGAACGTTGTCTCTCGTGCCCCTTGTATCGAC
CCGCACATGTACCTGGTTGGCTTATAGGATGATTTTAGTGGTTGGTTGTT
TTGTTGGTTGGTCGTTTGCGTGTTGTTTGTTACAGGTGATCTCGGATGCT
GAGGAACACGGTGCCGCGGTTCTCGGGGTGCCGATGAAGGCCACGGTCAA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig5019:12181..14031+

>mRNA_H-paniculata_contig5019.12266.1 ID=mRNA_H-paniculata_contig5019.12266.1|Name=mRNA_H-paniculata_contig5019.12266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig5019:12181..14031+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGTTCTCGTGTTGGACAAAGAATACCGCGACGGTTTCGAAGATCTGCG
GAAATCAGAGAAGCGGCTTGTGTTCGCCGACCCTGGAAACTCGTTCTCGT
GTTGGACAAAGAATACCGCGACGGTTTCGAAGATCTGCGGAAATCAGAGA
AGCGGCTTGTGTTCGCCGACCCTGGAAAAGAGCGTCAGGACTCCGTCTAC
AATGCGTTACAGAAGGTGGATCCTGAGGCATCGCTGGTGTGCATACATGA
CGCAGCCAGGCCACTCGTGACCAAGTCGTGCGTGCGGAAGAGAGCGTCAG
GACTCCGTCTACAATGCGTTACAGAAGGTGGATCCTGAGGCATCGCTGGT
GTGCATACATGACGCAGCCAGGCCACTCGTGACCAAGTCGTGCGTGCGGA
AGGTGATCTCGGATGCTGAGGAACACGGTGCCGCGGTTCTCGGGGTGCCG
ATGAAGGCCACGGTCAAGGTGATCTCGGATGCTGAGGAACACGGTGCCGC
GGTTCTCGGGGTGCCGATGAAGGCCACGGTCAAG
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