prot_H-paniculata_contig50185.12265.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50185.12265.1
Unique Nameprot_H-paniculata_contig50185.12265.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length198
Homology
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BLAST of mRNA_H-paniculata_contig50185.12265.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.130e-12
Identity = 41/115 (35.65%), Postives = 65/115 (56.52%), Query Frame = 0 
Query:    4 LENYDRCNEQLFIILVLTSSGVASSFLLRFEPKGFERPNGQLAWFGLIDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFHLRDELAHMGEEVSEERLTDIVIEGLTDDY 118
            L+ ++  + QLF IL     G A   L R  P      +G   W  L  K+Q + + RRR L R+L+  TM+   DPD+F+  V+HL ++L  +G  V++E+L DI+++GL  +Y
Sbjct:  193 LDEFEEADSQLFNILYHILIGPAKYVLRRHAPVDESSGSGLAVWKELESKFQPADEHRRRNLERELESATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
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BLAST of mRNA_H-paniculata_contig50185.12265.1 vs. uniprot
Match: UPI0010AABFCB (uncharacterized protein LOC108173372 n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AABFCB)

HSP 1 Score: 57.0 bits (136), Expect = 3.410e-6
Identity = 36/130 (27.69%), Postives = 66/130 (50.77%), Query Frame = 0 
Query:   65 LMRQLDGTTMKQNQDPDVFLARVFHLRDELAHMGEEVSEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTLRNIFANRVAREGSSRKSGGRESAMVATTSVSKSVKFKSKCHACGKIGHVMRDCH 194
            L R+ + T MK ++   V+L R+F + +++   GE++S ER+   ++  L   Y+ +    E   +    EI+  + ++ +  +  +  +  S  R  A +       +V  K KC  CGK+GHV+RDCH
Sbjct:   83 LRREFEYTRMKDSESLSVYLTRLFDIMNQMKSYGEDLSRERVVQKLLISLPRSYDPICSVIEHSKDLETLEIQEVVASLKSFELRLDRHAENSTERAFASL-------NVGGKPKCTGCGKLGHVIRDCH 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50185.12265.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE2.130e-1235.65Integrase catalytic domain-containing protein n=1 ... [more]
UPI0010AABFCB3.410e-627.69uncharacterized protein LOC108173372 n=1 Tax=Malus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 179..195
e-value: 0.0086
score: 23.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 179..193
score: 9.702
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 46..142
e-value: 2.2E-11
score: 43.6
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 47..196
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 14..33
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..13
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 177..196

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50185contigH-paniculata_contig50185:693..1286 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50185.12265.1mRNA_H-paniculata_contig50185.12265.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50185 693..1286 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50185.12265.1 ID=prot_H-paniculata_contig50185.12265.1|Name=mRNA_H-paniculata_contig50185.12265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
TLALENYDRCNEQLFIILVLTSSGVASSFLLRFEPKGFERPNGQLAWFGL
IDKYQNSSKQRRRILMRQLDGTTMKQNQDPDVFLARVFHLRDELAHMGEE
VSEERLTDIVIEGLTDDYEQVKYNAERDPEFSLSEIEVTLRNIFANRVAR
EGSSRKSGGRESAMVATTSVSKSVKFKSKCHACGKIGHVMRDCHSKTK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf