mRNA_H-paniculata_contig5015.12261.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5015.12261.1
Unique NamemRNA_H-paniculata_contig5015.12261.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5015.12261.1 vs. uniprot
Match: D8LGV6_ECTSI (Glycosyl transferase family 2 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV6_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 8.390e-16
Identity = 105/355 (29.58%), Postives = 145/355 (40.85%), Query Frame = 1
Query:    4 GKGRVLWEEVIVCRGQDNDGGNGGATGSSG---AWSKARDRGVVKVVGCGNSHNKGEDEPXXXXXXXXXXXXXKHGEVWLVCAASDAATAEWLWVPGPAIASAL-----------------------TAMEDAVAGGGGGEGREETRPSVIGELFRLATRSDVSGTVFG--------------------VMGWVRTRPKVGSEWGSSGKEKWHFIAGGGAVPEGMEETVA-IEVDALASGIFVKGSHLRAACDLMR---------GNDIGVTPNVYDTNKHGSNTQTNG-------------------SPP--------AVPSGVEIDDA----MKLSSVSYVLRRTLGVRSYVA 807
            G+    WEEV VC  ++++G   G  GS G   AW +A +RG VK+V C +    G DE              + GE+ L CAA DA+ +E++WVPGPA+A AL                        A    V G  G  G + T+ +   +  R        G V G                      G  R+  K     G   K  W F+ G GA   G E     +EVDAL   +FV+G+HLR AC L+R         G  +GV+ +  D  +  ++   +G                   SP         A  +G E  ++    MKL +VSYVLR+TLGVRSY +
Sbjct:  229 GEAEWAWEEVFVC--EEDEGALDGILGSRGEGEAWREALERGAVKLVPCSSG---GADE-------------RRAGELSLACAAGDASVSEFVWVPGPAVAEALGMADAKRSTPSGRGAEVVARLSRAAAATGVEGVFGVRGWQRTQDAPRPKRQRRGLLVQSGGVVGGEPRRDAPEPAQPDGEPEGETAGGGRRSLLKAFKRTGRDEKP-WQFVGGAGA---GAETGAGLVEVDALTDALFVRGTHLRHACALLRNAGTSGRAAGRRLGVS-SAGDGGEEETSDFVDGQRQXXXXXXXXXXXXXXGISPDRRRRRATMAKTTGNEAANSAISFMKLPAVSYVLRKTLGVRSYAS 560          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5015.12261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGV6_ECTSI8.390e-1629.58Glycosyl transferase family 2 protein n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5015contigH-paniculata_contig5015:2453..11426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size883
Cds size882
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5015.12261.1prot_H-paniculata_contig5015.12261.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5015 2453..11426 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.1277323-CDS-H-paniculata_contig5015:2452..26541622930476.1277323-CDS-H-paniculata_contig5015:2452..2654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 2453..2654 -
1691481308.717835-CDS-H-paniculata_contig5015:2452..26541691481308.717835-CDS-H-paniculata_contig5015:2452..2654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 2453..2654 -
1622930476.1409647-CDS-H-paniculata_contig5015:3073..31581622930476.1409647-CDS-H-paniculata_contig5015:3073..3158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 3074..3158 -
1691481308.728929-CDS-H-paniculata_contig5015:3073..31581691481308.728929-CDS-H-paniculata_contig5015:3073..3158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 3074..3158 -
1622930476.1516666-CDS-H-paniculata_contig5015:3802..39251622930476.1516666-CDS-H-paniculata_contig5015:3802..3925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 3803..3925 -
1691481308.7368593-CDS-H-paniculata_contig5015:3802..39251691481308.7368593-CDS-H-paniculata_contig5015:3802..3925Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 3803..3925 -
1622930476.1620479-CDS-H-paniculata_contig5015:6450..65301622930476.1620479-CDS-H-paniculata_contig5015:6450..6530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 6451..6530 -
1691481308.7465608-CDS-H-paniculata_contig5015:6450..65301691481308.7465608-CDS-H-paniculata_contig5015:6450..6530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 6451..6530 -
1622930476.1761851-CDS-H-paniculata_contig5015:7230..74901622930476.1761851-CDS-H-paniculata_contig5015:7230..7490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 7231..7490 -
1691481308.754285-CDS-H-paniculata_contig5015:7230..74901691481308.754285-CDS-H-paniculata_contig5015:7230..7490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 7231..7490 -
1622930476.193777-CDS-H-paniculata_contig5015:11294..114261622930476.193777-CDS-H-paniculata_contig5015:11294..11426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 11295..11426 -
1691481308.7619572-CDS-H-paniculata_contig5015:11294..114261691481308.7619572-CDS-H-paniculata_contig5015:11294..11426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5015 11295..11426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5015.12261.1

>prot_H-paniculata_contig5015.12261.1 ID=prot_H-paniculata_contig5015.12261.1|Name=mRNA_H-paniculata_contig5015.12261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=294bp
GGKGRVLWEEVIVCRGQDNDGGNGGATGSSGAWSKARDRGVVKVVGCGNS
HNKGEDEPPPPPPPATTTTTTKHGEVWLVCAASDAATAEWLWVPGPAIAS
ALTAMEDAVAGGGGGEGREETRPSVIGELFRLATRSDVSGTVFGVMGWVR
TRPKVGSEWGSSGKEKWHFIAGGGAVPEGMEETVAIEVDALASGIFVKGS
HLRAACDLMRGNDIGVTPNVYDTNKHGSNTQTNGSPPAVPSGVEIDDAMK
LSSVSYVLRRTLGVRSYVARTGAAGNLGTALMAGGGGGGGSDGG
back to top

mRNA from alignment at H-paniculata_contig5015:2453..11426-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5015.12261.1 ID=mRNA_H-paniculata_contig5015.12261.1|Name=mRNA_H-paniculata_contig5015.12261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8974bp|location=Sequence derived from alignment at H-paniculata_contig5015:2453..11426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAAGGGGCGTGTGCTGTGGGAAGAGGTGATTGTTTGTAGAGGACA AGATAATGACGGCGGTAATGGTGGGGCGACAGGTAGCAGCGGAGCGTGGA GCAAGGCGCGCGACCGCGGCGTGGTAAAGGTGGTGAGTTGGAGCGGGCAG GGGACGGGGAAGGGGGGTGCTTGTTTTCCGTTGTTTACGGCAACCTTGAC AGGGGCGTATCACTGTATCGCTTGCATGCGTACTGTAGGGTGAAGCATGA AATGCTACTATGGGACATGGTTAGGAGACCCTAGCCTAATCTGGAGAATA ACAACAAATTTTGTGATGCGGATTTCCGTCTCTTCACCGTTGATTAAAAA TCCACAAAAAAATGCACGGTAGAATTTTTTTGGGAAAAATAAAATAAAAT AAAATAAAATAGAAAATAGAAATTTTATAGCCAATAAAACGTATTTTCCT ATGAGAAATGAGCTTTTTTTTTTCGTAAAATCTGCTTTTTCGCCAATATT TTGACTTCAAAGGTGAAAAAGGACACAATCCGCCTTGTCATTTTTTCGGC ATTAACATTGAGAAAAGTGGTACCAAAAACAAAAAAAAAGCGTTGTATCG AAGATGGAGTTACTGTCGAAAAACCGAATATACAGTGGAATATGGCCAAA CACAGCGAAATCAATGTTCCCATGCGCGTTTTCAGCACAAGACTCGGCCT CAAATGGGTAACAGGATGAATCTCCAAGAATCCTTATGTACTTACTTCTT CGCGCCTTGTGCCAAGGAAATCCCCCCTGCAAACTATCTCAGCTGCCTGC GCACAACCTTGCGCAAAAGTCTCTTTCTCTAGAGTGAGATTTCCGTTATT TGGGGGCCAAGTGACAGCATTTACTGTTATAACTTTTTTCGAAATGCATC AGATTTATTAGGTTCTACGGAGATACCTGGTGTTGCGCATACAAATGTGT CTGTTAGAAAAAAATATGAATCAAACACCACTCAATTTGGGCCCAAAAAT TGGGTAATCTTTTTTCAGGTGCCATAGCGGCGTATTCAGCGAGATAGAGC GTCTCCTATCTGTTGTCTCATATAGTACTAGTAGCCATATATGAACGACT ATCTCCATAAAATATACAGGAGCCTTTAATTCACTAAGTGAGATTTTTGC ATTGTGTGGATTGACCCAACCACAGCCAGGTGAAAGTATATCTCTGAAGC TCATGTTATAACTGTATTCGTACCGCTGTTGAGGTTATACGGTGGACCTG AAATTTTAGTTATTTACACCGAATCAGCAAAATCTAATCAAAAAGGGGGC GGGGTTACTCATGTTTTTCTTGTGTGCCGTAGTCATTAGACCGCTGACCA GGCGTCCTCGGGACGATGGAGGTTCGTTGCTATCGCAGATATTTCCGATA GTGGGCAGGGATAGGGGGGGGAGGAGAGCGGTTCGAAACAAAAAACAGAA GATGAACGATTTTCACGTAAAAAACGTTTCGTTGACCATGGAGCAATCAA TTCGGAGGGGTGTATCTTCGGCATCTTTCAAAGCTGTACACTGGGTTGCT TGGTCATTATCCATAAACTGAAAGAAAAGTCGGGGAGGGGGAGATAAATA CACCCGCTTGCCACATTCAGTGACTCTATAAAGATCCATATATAGCATAT ACCCCTGCTGAGGTTTTAATTGTGCGGATGAGACTTTAAATCTCAGTTGC GTAGACACTTTTCAACAATTAGATAATGACCAATAATGGGGTGGATGGAT GGATGGATGGATGGATGATTCTTCAACGGTCGGTTTATCCGCTGTCCTTT CGGGGCGTTTTTCTTTTTTCGGAAATCGTAAGTGGTGTGTCTTCCTCCAC AAATCAACCACTTTTCTTTTTAGCCAAAAACTTAAACATACATACATGTA TACTTCCTCTGTGCCATAAATAAAGCCGGTTGTATTTGGCCAGATGAGAT CTGAGGGTATTCAGCGACTGCGTTCGCAATCGTTGTAAAGCTGAAATATG ATTGACTTATATGGGCTATTATGAAGCGTATCCCAATCTGTGTATCAGAA TTTTTGGCTGCTCAAGTTTGGGCTAATGTATAGATCATTTTCCACTTATT TTATTTTGTTTTATTATTTGCCGACTTTCAATTTTTTTTCCGTTGAGAAA ATACGAAAAAAAAGGGGGGGGCAAAGATATGGCTCTTTGCTCGGTCGAGT GCTTTATTTGGCACCGTGCGCGCACTCGGTGGACTTGAACAATCTCCGCA AATTTGTGGTGTGTTTAGTCCCCCCCCCCTAAAAAAAAAACAAAAAAAAA ACATGTGGGATTTTAATTAAATAATTAAAATGAGATCGTAGATTTTGAAG TTTTGGTATAAACTCAAATGACTTTGCTTATGGCACAGATAAATAAATGT ATATATGGTATATATATGCAAATGCCAACGAGCCGTTCACTATTGTTCAT TTTCATTCATGAATCAACCAACGTATTAATCGCCTCTATTAATTAGCCTT CTTTTTTCAGCATATAACGCCATGTGATTTTTGGGGGGAAAAGAGAGTGT AGATTCCACCAAACAGATGTTCGGTATGTGAGCCAGCCAGAGCCAGCCAG AGTTGGAAATTGTAGTATTAATAGCGTCAAAACAACAAAAGTTATAATTA TATGACGGAATATTTTAAAATATGTATGTATACATATATTGTGTAAATTT GTATTGTAATATTTCAATCTTTTATTTTAGTATGTTGTACTGTGGTCATG TTCCAGCTGCACCGCACATAGCACAGCCACACAGCCACACCGCACAAATC TGGTCATCATGTGTCGCTCGAGGGAGATAAAGATACTGTAGCTGTAGAGA GGCAGGGGGCGAGGCAACCAGGGGGAGGCTGACAGTCCGCAGACACTCCA GGAACTTGACCGTGATGAAGGTCTGACGTGGTGACAAACGCATTTGTTGG TGGTAACTCTCTTGTTTATTTTCGTTACGTTGCAGGCGTGACAAGGTAGA CTGTAGGCCGCCGTGGCGTTGAGATAACACCAGTTGAGTTGGTGTTTTTT GCACTCGGGACATGTCATTTGAACCTGATCGCGGGTATCGACGGATCGCC TTGGTCAAGTTATGATTTTAATATTTTTAAATGTGGGTGTGTATGGTTAA ATTGCGCAGGACACTGAGTTGGTACTGATGTGGATTTAAAAAAAGAAAAA GTAACGGCTATTTCTGTCTTGCGTTGCATATTGCACCTGACTGCTGGATC CGGTATGGATCTATGTATAGTGTACTGTTCTTGCTTGTTGTACATGATGC TATACAGCTTTAATCTTCACGGTCTACGTCACTTGTAACTTGCAGCATGT AGTACTTAAATAGTGTGCTGTGACGTGACGTGACGTGACGACTCTACGAC TAGTATACACTATTATCATGTCACCGTGTGCACCTTCCCTTACATGCATA GTATCATATACTGAAATAGGCTGATTTAGATCGTGCATCGTGCAACAATC TATATACTAGGTAGAAATCGCCAGGTATTGCGTGGATATATTGGTAGGAT ATGATATACTTTTTCCATATAACATGGCTATTTAATGGCAACAGAATATA TTCAATATTCCAATAATCAAATCCTACAATATGGAATACTATTTACACCC AAACTCAAATATTTTCCAACCCTGGAGCCAGCAGCCCCCTCAGGGTTAAT AACGAACAAAAGAGATTGTTTATTAAGCACGCCGTCGCGAACTGTTTGTT ACAATGAAGAGCCACCACCACCACTGACCGCCCCCACCACCAACAACAAA GCGCACCGCGTGTGCCGCAATGAATTGCCATCTCTCTCTCTCTCCCTCTC TCTCTCTCTCTCTCTCTTTTTCTCTCTTTCTTTCTCTCTCTCCATTGATT TACACACCTGCACGCCTCATCAACATTTTTAATAAGGTTGGCTGCGGTAA CAGCCATAATAAAGGAGAAGACGAGCCGCCGCCGCCACCACCACCAGCAA CGACAACAACAACAACAAAGCACGGGGAAGTATGGCTCGTGTGCGCTGCT AGCGACGCAGCGACGGCTGAATGGTTATGGGTGCCCGGCCCTGCCATAGC GAGCGCGCTGACGGCCATGGAGGACGCGGTTGCCGGTGGCGGAGGAGGAG AAGGGCGAGAAGAGACGAGACCTTCGGTGATCGGGGAGTTGTTCAGGTAA CGCTTTGGTTGGCTCGTTCGTTGGTTCGTTGTTTTGAAGAACTTGCTGTC TATCCATTTCATGGTTGACTAGCTCCCCGTCGGTGTGGGCTCTGTTGAGG ACCTCGTAATGTGATTAAAGTCTAGGGTTGGGAATGTATTATGTAGTTGT AGTGTACCGGAGCGAGCACTCGGAGTTCTAACCGTATCACCCCTTTATTG GTCATGATCTAACTTTGCCTGATACGTGTACACAATTGAACCTTTGAGGT CAGCTATCCGCATATCCTCAACATATGTACAATGATATGGAGTTCTAATA TATGAGTGTTACATATTTACGGATTTAGTTGGGGAATTAGGGTGGAATAT GAGATGTTCCGACTCTGAATACCGCCCAATACTGAATGCCCCGAATTTTC ATATTTTACCAATCTCATTTTCTGAATAAGCTAGAGAAAAAAAAAAGGAT TAAAAGGAGCAAAAAGGCCACTGCTTAGCTCGTGTGTAGGAGATCAGGCA GGGTTGAGGAACCTTAGGATCATCAGAAATCTCAGGAACACCAGGAACAC CAAGAACGTTCGCTCCCCATATTTCACCGTTGGCGCTTTCTATGGCACAT GAACAACAAGGCCCCAGCTGCTCGTCCTCCCTGCTCTTGCTTTTTTCTTG CCTCTGTAACGCACACCGTCCTTCTTGTTGTTTTGTGAGGGATCAGGCTA GCTACCAGGTCAGACGTGAGCGGAACTGTCTTCGGCGTGATGGGCTGGGT CCGCACTCGGCCGAAAGTCGGCTCTGGTACGAGGCGTATATTTAGAGGGC AATACGACCGACTGACTGCTTGAGAGTGATCAAAATTGTCGAAGATTTTC TACCCCTGGACAAATACGAATACTTGACGTATTCGCCACGGACGTTAAAA CGTATTCGCTTGAGGATCAGAATGAGCGGACAAATCACATACAATACCCA CCCCCCTGTCCATTCGATTTACGAATACTAACACGAGCTCATTCTGAAAT CCAAGCGAATAATATTTAGATTTTCATCCCCCCCAGACAAATACGAGTAC ATGACACGAAAAATCTGGAATGAATACTGTATCTGTTTTAGTTGGGGAAG ATGTCCATGTGACGCGAATAATACGCAGTGTACTCGATATACCATGGAGC ATCGAAAAGCTCGGGCAGATCGAGCATTCAATCTGTACAGCACCATCCGG AATATACAGGACTGGCATGTGTGACTGTTCGCCAGGTGGTCCAGCATGAC CATGAGCACGTCTTGTCCCTCCCCCCCCCCCCCGAGGCAACTGCCTGCGG GATAACGGATACTTGGGCCGGGTAAAATTTGGTGAAAACATGATGATAGA AGTGGCGTGCGAAAGTTGGATGATAACAGTCCCAGTGGAAGTCTCAGAGA AGGGTTTTGTCTTGGTCACCTGGGGATGCCAAAAGAGAGGAAAGGATCAA GTTTTGTAATATATTGATGTGCCCTAAACCATTAATTTTGTGTCTTGTAT CGTACAGCTGCTCCGGGTTGATGAATAGGGATACGAAAAAAGCAACGGGT CATTATTATTTTTTATTTTTTATTTTTGTGCCATCTTCCAGCACATGCTG AATGATGCTTGGAAGAATATATATATATATATATATATATATATGTGTGT GTGTGTGTGTTTATGTATTTGAATCTTCACTATTTTTTTGCGATTAGCTG CCTTCATTACCTTCATCGATAAGTCGTATTAGTTTCGGAGATAGCTGCCT TTTGTCACCTTACATGTGATTTTTCACTCTCGCAAATAGCTGTTTTTCAT CCTTTTTATCCTCAAGTCACTTTTTTTTGGAAGTAGCTGTTTGGAACCTT GAATGAATTTTTCGGGGGTTCCCAAATCGCTGTTCCAAAGCTTTTCGTTC AATTTTGTCCGGTTTCGTACTATTAATAATCAACTGTCGCATATATATAT ATATGTTTATTTTTTTGTCGTTGTTTGAGACCTCCATAGCTCTTCCATAG CTTGTGCCGTCTTCCCAATAGTTAGTACTCTCTGAATGTGCTCATTTGAC GATGACATGCATTTTGTGCGAGTGCACATGCGTAGGCAAATGTGTATGCA ATTATGTGCACGTTTCGATTTATTTATTTTTTCAACCCCCGGAAGGCTGA GGCATTTCCTTTGACAAAACAGAGTTGTTTATTCTTCTGCGGGGTAGGCG CCACCCCGGTTCGGCCGAACCAAGTAGGTAGACAGTGTGGGGGTTGCACC CACTTAAAGACCTCTGACTAGATTTCCAGTCATGCTCATTTCACGAGCTA CCCTACCCGTTCGGGCGTAGGTCCGTGGACATCTATCGGGTGTTGGGATT TTGGTGTCAAGGAGGTAGCATTCGCCTAGTCAGTCGTTTCAGATCTCAAT AATTAGTTGTCGTTGGATGTGTGTGTGTATTTTTTTGTTATTTTTTTCTA TTTCACGTATAGCTCCCTTCATTGATCCGTAATGCAGTACGGTTGAAGGA CAAAGAAGGGGTAAGCGTGAAAAATTAAAAAAGAACAAAAAAAAAACAGG AGTACAACGGTAAGGAACACTACATACGTCCGGCGGATCATGATCCATCT TGCCAATTACTTGTTATTAGTGTACATGGTCTGTACATGGCTCACGGCTT CTGAGGCCCTATTCCCAGCTTCGTTCCCTACAGCACTGGACGCCGAGCAC GCAGCGTAGCGCAAAAAAATCGCTTATTCGGGTTTCTCTGACCCGCAGTC ACGTCTTTTTTGTTTTCTCGGACCAACGGGGTCTGACAAGCCCTCTTTTT AGTGATTTGGACAGATCATGGTCCATCTGATGTGTTGACACTAGATATTC TGACGTAAAAGGTAAAAATGTTGATTTCTCCATTTGTGAAGGAAATATAT ATATATATATATATATATATAACTTAAAACGACCCTACAGCCCCTTCCTG TTCATCGCACATTTCGTCGTAGGGCTACTGCTACACCACTTGAATAACAC TATCCAAAATAGGTACAATAGATAATAGGTGGTTTTTATAGCCCCCCAAA ATTAATAGAACAAAAAAATACACACACACACACACACCAAACGACACAAC AATAACGCGACGAGTTCATTTATATATTATTTTGTGAATTTTGAATGAAT GAATGCGACTTTTTCTCAGCAGTATTTATGTTTCCTTTACTTCACTGATT AAATATCTAGTAAAATGTTGCTTTCAAGAATTTTTTTGTTCTTGACTCCT TACATATCTATATCTATATCTATATCTATATCGTTCCCGTTCTTCGCATA GAGTGGGGCAGCAGCGGCAAGGAAAAGTGGCACTTCATTGCCGGAGGTGG CGCCGTGCCCGAAGGGATGGAGGAGACTGTGGCGATCGAAGTGGATGCTC TGGCCTCGGGCATCTTCGTCAAAGGCAAGGCCTTGGCTCAATTTCAGTAC ATGGAGCAATAATACCATATTACGGAGGGACATAATAATCAGGAGTTTTT TTTTTTGTTTTTCGGAAACTGAATTTTGTTTTTCCCCGTTGGTTGGTCTA CAGATTTTCGCTTCAAACTGAAAACCAAAACACACTCTAAAAACACTTGC ACAGGCATGCAGCAACCCGATTGGTGCATATCGTATTGCATGAGTTACAC CTCAAAATGTCAATTTTCTAATTTGCTCTTGATTATTATGTTCTTCCGTA ATAGCTCCACATATGCTAATAGTATTGTAGCATATCTAGTCTTGCTTATG GGAACTTTTGAACTTTCATCTTCTGGCTGCGGGTCTGAGAAAATTGGGCT CAAGTGTACGAAGAAAAAGTAGGATAACCGCACGGCTATGCATCCGCCCG TGTGCATTTCGTGCTGGCGTGTCTTCTCTTCTTTATCTTCTCAGACCCGC AGGAGACCAGGGAGAAACCTTGATTCAGCCTTTCTCTGATATCTTGTGGT AAATACTGAAGTGTCGAGTCATAGCTTTCGTGTGTACATACGCCAGTGCT ATTATGATGTGTATTAATGAGGAAGGATATTTCTCGTTTCTACTATAACG ATGCTTCCGCTACTGCAGGCAGTCATCTCCGTGCGGCCTGCGACCTCATG CGCGGCAACGACATCGGCGTCACCCCAAACGTCTACGACACCAATAAACA CGGGTGAGAGGGTGTGCCACCGGGGGCAGAGGAATAGATGTGATCTTAGA TTCGGGATTCGGCATTCGGGATTTGATATTCGATTTTTTTTTTTTCCTCG TTCGAGAGATGACCAAGGATACCCCCCCCCCCTATTTCCTCCCCACTCCC CGCTAGAGCCACATTTGACAATCAACGTAGGATTCAATGATTAGCTATCA TAAAAAGATTGCTCTTGTAGGACCAACGCTCCGTCCTCCCGAAAACTCGT GATGAGAGTGTGTAAGAAGTACTGTATGGCATGCAAAACAAGAATAACCC CGCCCTTAGTAATACAAATTTTCTGATGTTGTATAGAGCTATATATCTAT ATTTCAAGCTCAGCTGCATAACCTCCAGATAGGTACGCCCCCCCCCCCCC CTGCCCTGCCCACCATCAACAGCAGCAACACACAAACGAACGGCTCGCCA CCAGCAGTCCCATCGGGCGTTGAGATCGACGACGCCATGAAGCTGTCGTC CGTCTCGTACGTCCTGCGTCGTACTCTCGGCGTCCGCAGTTACGTCGCTC GCACGGGCGCAGCGGGGAACTTAGGGACGGCCTTGATGGCTGGTGGTGGT GGTGGTGGTGGTAGCGACGGAGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5015:2453..11426-

>mRNA_H-paniculata_contig5015.12261.1 ID=mRNA_H-paniculata_contig5015.12261.1|Name=mRNA_H-paniculata_contig5015.12261.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig5015:2453..11426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGAAGGGGCGTGTGCTGTGGGAAGAGGTGATTGTTTGTAGAGGACA
AGATAATGACGGCGGTAATGGTGGGGCGACAGGTAGCAGCGGAGCGTGGA
GCAAGGCGCGCGACCGCGGCGTGGTAAAGGTGGGAGGGAAGGGGCGTGTG
CTGTGGGAAGAGGTGATTGTTTGTAGAGGACAAGATAATGACGGCGGTAA
TGGTGGGGCGACAGGTAGCAGCGGAGCGTGGAGCAAGGCGCGCGACCGCG
GCGTGGTAAAGGTGGTTGGCTGCGGTAACAGCCATAATAAAGGAGAAGAC
GAGCCGCCGCCGCCACCACCACCAGCAACGACAACAACAACAACAAAGCA
CGGGGAAGTATGGCTCGTGTGCGCTGCTAGCGACGCAGCGACGGCTGAAT
GGTTATGGGTGCCCGGCCCTGCCATAGCGAGCGCGCTGACGGCCATGGAG
GACGCGGTTGCCGGTGGCGGAGGAGGAGAAGGGCGAGAAGAGACGAGACC
TTCGGTGATCGGGGAGTTGTTCAGGTTGGCTGCGGTAACAGCCATAATAA
AGGAGAAGACGAGCCGCCGCCGCCACCACCACCAGCAACGACAACAACAA
CAACAAAGCACGGGGAAGTATGGCTCGTGTGCGCTGCTAGCGACGCAGCG
ACGGCTGAATGGTTATGGGTGCCCGGCCCTGCCATAGCGAGCGCGCTGAC
GGCCATGGAGGACGCGGTTGCCGGTGGCGGAGGAGGAGAAGGGCGAGAAG
AGACGAGACCTTCGGTGATCGGGGAGTTGTTCAGGCTAGCTACCAGGTCA
GACGTGAGCGGAACTGTCTTCGGCGTGATGGGCTGGGTCCGCACTCGGCC
GAAAGTCGGCTCTGGCTAGCTACCAGGTCAGACGTGAGCGGAACTGTCTT
CGGCGTGATGGGCTGGGTCCGCACTCGGCCGAAAGTCGGCTCTGAGTGGG
GCAGCAGCGGCAAGGAAAAGTGGCACTTCATTGCCGGAGGTGGCGCCGTG
CCCGAAGGGATGGAGGAGACTGTGGCGATCGAAGTGGATGCTCTGGCCTC
GGGCATCTTCGTCAAAGAGTGGGGCAGCAGCGGCAAGGAAAAGTGGCACT
TCATTGCCGGAGGTGGCGCCGTGCCCGAAGGGATGGAGGAGACTGTGGCG
ATCGAAGTGGATGCTCTGGCCTCGGGCATCTTCGTCAAAGGCAGTCATCT
CCGTGCGGCCTGCGACCTCATGCGCGGCAACGACATCGGCGTCACCCCAA
ACGTCTACGACACCAATAAACACGGGCAGTCATCTCCGTGCGGCCTGCGA
CCTCATGCGCGGCAACGACATCGGCGTCACCCCAAACGTCTACGACACCA
ATAAACACGGCAGCAACACACAAACGAACGGCTCGCCACCAGCAGTCCCA
TCGGGCGTTGAGATCGACGACGCCATGAAGCTGTCGTCCGTCTCGTACGT
CCTGCGTCGTACTCTCGGCGTCCGCAGTTACGTCGCTCGCACGGGCGCAG
CGGGGAACTTAGGGACGGCCTTGATGGCTGGTGGTGGTGGTGGTGGTGGT
AGCGACGGAGGCCAGCAACACACAAACGAACGGCTCGCCACCAGCAGTCC
CATCGGGCGTTGAGATCGACGACGCCATGAAGCTGTCGTCCGTCTCGTAC
GTCCTGCGTCGTACTCTCGGCGTCCGCAGTTACGTCGCTCGCACGGGCGC
AGCGGGGAACTTAGGGACGGCCTTGATGGCTGGTGGTGGTGGTGGTGGTG
GTAGCGACGGAGGC
back to top