mRNA_H-paniculata_contig50149.12260.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50149.12260.1
Unique NamemRNA_H-paniculata_contig50149.12260.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: A0A177TL22_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TL22_9BASI)

HSP 1 Score: 104 bits (260), Expect = 7.640e-24
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            M+E+  ALV   TW+  +   LPAGRK I ++W++K KL ED    R+KARL+AQGF+QV G D+FET APVAR+ +LR + +LAA   + +  +D+  AYL+  +EEE+++
Sbjct:  652 MDEQMNALVGMHTWDLVE---LPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYI 760          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: A0A177U0N4_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0N4_9BASI)

HSP 1 Score: 104 bits (260), Expect = 7.640e-24
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            M+E+  ALV   TW+  +   LPAGRK I ++W++K KL ED    R+KARL+AQGF+QV G D+FET APVAR+ +LR + +LAA   + +  +D+  AYL+  +EEE+++
Sbjct:  653 MDEQMNALVGMHTWDLVE---LPAGRKAIGSRWVYKLKLNEDGMADRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFGWVIHQVDVVTAYLNGDLEEEVYI 761          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: Q45W64_PHACR (Polyprotein n=1 Tax=Phanerochaete chrysosporium (strain RP-78 / ATCC MYA-4764 / FGSC 9002) TaxID=273507 RepID=Q45W64_PHACR)

HSP 1 Score: 104 bits (260), Expect = 7.700e-24
Identity = 52/112 (46.43%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            M+ E   L  NGTW+    G LP GRK I +KW+F  K  +D S+ +YKARL+AQGFSQ+ G+D+F+T +PV R  T R   +LAA    + + +DI  AYL  P+EEE+++
Sbjct:  851 MDAEMAQLEANGTWKK---GELPPGRKAIGSKWVFAIKRHQDGSIDKYKARLVAQGFSQIAGQDYFDTFSPVVRQETFRVATALAATENLDSDALDIVGAYLHGPLEEEIYM 959          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: A0A834DAP9_JUGRE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A834DAP9_JUGRE)

HSP 1 Score: 102 bits (253), Expect = 1.040e-23
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            M  E RAL  N TW  E    LP G+K IR KWIFK K K D S+ RYKARL+A G++QVEG D+ ET APVA+M T+R + ++AA   + +  +D++ A+L   ++EE+++
Sbjct:    1 MTVELRALEANSTWTLES---LPPGKKPIRCKWIFKTKFKADGSIERYKARLVANGYTQVEGLDYHETFAPVAKMTTVRCLLAVAATKNWIIHQLDVNNAFLHGDLDEEVYM 109          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: A0A182GR55_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GR55_AEDAL)

HSP 1 Score: 97.1 bits (240), Expect = 1.530e-23
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            M++E++A +EN TWE  +   LPAGRK I +KWIFK K  E  ++ R+KARL+AQGF+Q  G DF E  APVA+  TLRT+ ++A+     ++ +D+  AYL   ++E +++
Sbjct:    1 MDDEYQAQIENNTWELVE---LPAGRKAIGSKWIFKSKEDEKGNIVRHKARLVAQGFNQKFGVDFDEVFAPVAKQVTLRTLLTVASRRGMLVKHMDVKTAYLHGKLDETIYM 109          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: A0A2I0I2U7_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I2U7_PUNGR)

HSP 1 Score: 96.3 bits (238), Expect = 1.770e-23
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            MEE+ RAL  N TW  E    LP G++ I  KW+FK K K D SV R+KARL+ +GF+QVEG D+ ET APVA++ T+R + ++A    ++L  +D++ A+L   ++EE+++
Sbjct:    1 MEEKIRALENNNTWTVET---LPVGKQPIGCKWVFKVKRKADGSVERFKARLVTKGFTQVEGIDYNETFAPVAKLVTVRCLLTIALFRGWDLHQLDVNNAFLHGDLQEEVYM 109          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 103 bits (256), Expect = 1.940e-23
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            M++E  +L ENGTW+  D   LP GRK +  KWIFKRKL ED +V RYKARL+AQGF+Q  G D+ E  APV R  T R + ++A++    ++  D+  AYL+  +EE +F+
Sbjct:   13 MDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFM 121          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: UPI00115FD4EF (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI00115FD4EF)

HSP 1 Score: 97.8 bits (242), Expect = 2.630e-23
Identity = 48/112 (42.86%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            ++EE +A+  N TW+  D   LP G+K + ++WIF  K K D  + RYKARL+A+GF+Q  GED+ +T APVA++ T+R V SLA    +EL  +D+  A+L   +E+E+++
Sbjct:   79 VQEETKAMELNHTWDEAD---LPKGKKAVTSRWIFTIKYKSDGGIERYKARLVARGFTQTYGEDYLDTFAPVAKLHTVRVVLSLAVNLEWELWQMDVKNAFLQGELEDEVYM 187          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: UPI001AA0F8A7 (hypothetical protein n=1 Tax=Bacteroides uniformis TaxID=820 RepID=UPI001AA0F8A7)

HSP 1 Score: 94.7 bits (234), Expect = 4.840e-23
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYL 306
            M EE+R+L+EN TW   D   LP GRK +R +W++K K   D  V + KARL+A+GFSQVEG D+ ET +PVA+M ++R V SL A    E+  ID+  A+L
Sbjct:    4 MNEEYRSLLENNTW---DLVPLPKGRKFVRCRWVYKTKFGPDGKVDKNKARLIAKGFSQVEGIDYIETFSPVAKMNSIRLVVSLDASFKCEVHYIDVKSAFL 102          
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Match: A0A177TFL0_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TFL0_9BASI)

HSP 1 Score: 102 bits (254), Expect = 4.950e-23
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 1
Query:    1 MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKARLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEAYLSAPVEEELFV 336
            M+E+  ALV   TW   D   LP GRK I ++W++K KL ED    R+KARL+AQGF+QV G D+FET APVAR+ +LR + +LAA   + +  +D+  AYL+  +EEE+++
Sbjct:  767 MDEQMEALVGMHTW---DVVELPPGRKAIGSRWVYKLKLDEDGVAHRWKARLVAQGFTQVAGVDYFETFAPVARLDSLRVILALAAHFDWVIHQVDVVTAYLNGDLEEEVYI 875          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50149.12260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177TL22_9BASI7.640e-2447.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A177U0N4_9BASI7.640e-2447.32Integrase catalytic domain-containing protein n=2 ... [more]
Q45W64_PHACR7.700e-2446.43Polyprotein n=1 Tax=Phanerochaete chrysosporium (s... [more]
A0A834DAP9_JUGRE1.040e-2347.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GR55_AEDAL1.530e-2344.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0I2U7_PUNGR1.770e-2344.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL1.940e-2347.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00115FD4EF2.630e-2342.86hypothetical protein n=1 Tax=Acinetobacter baumann... [more]
UPI001AA0F8A74.840e-2349.02hypothetical protein n=1 Tax=Bacteroides uniformis... [more]
A0A177TFL0_9BASI4.950e-2347.32Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50149contigH-paniculata_contig50149:302..637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.2
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog4558.Sb0010s005460.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size336
Cds size336
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930476.0281672-CDS-H-paniculata_contig50149:301..6371622930476.0281672-CDS-H-paniculata_contig50149:301..637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50149 302..637 +
1691481308.657751-CDS-H-paniculata_contig50149:301..6371691481308.657751-CDS-H-paniculata_contig50149:301..637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50149 302..637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50149.12260.1prot_H-paniculata_contig50149.12260.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50149 302..637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50149.12260.1

>prot_H-paniculata_contig50149.12260.1 ID=prot_H-paniculata_contig50149.12260.1|Name=mRNA_H-paniculata_contig50149.12260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MEEEWRALVENGTWESEDPGRLPAGRKVIRTKWIFKRKLKEDSSVARYKA
RLMAQGFSQVEGEDFFETSAPVARMPTLRTVFSLAAEHYFELEGIDIDEA
YLSAPVEEELFV
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mRNA from alignment at H-paniculata_contig50149:302..637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50149.12260.1 ID=mRNA_H-paniculata_contig50149.12260.1|Name=mRNA_H-paniculata_contig50149.12260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at H-paniculata_contig50149:302..637+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGAGGGCATTGGTGGAAAATGGAACATGGGAAAGCGA AGACCCGGGGAGGTTACCGGCAGGGCGGAAGGTGATTCGTACGAAATGGA TTTTCAAGCGAAAACTGAAGGAGGACAGCAGCGTGGCACGCTACAAAGCG CGACTGATGGCTCAAGGCTTTTCACAGGTGGAGGGGGAAGATTTCTTTGA AACCAGTGCTCCCGTAGCTCGCATGCCGACGTTGCGTACTGTTTTTAGCC TGGCTGCCGAGCATTATTTTGAATTAGAAGGTATAGATATAGATGAAGCG TATTTGAGCGCCCCGGTAGAAGAAGAGCTGTTTGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig50149:302..637+

>mRNA_H-paniculata_contig50149.12260.1 ID=mRNA_H-paniculata_contig50149.12260.1|Name=mRNA_H-paniculata_contig50149.12260.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig50149:302..637+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGAGGGCATTGGTGGAAAATGGAACATGGGAAAGCGA
AGACCCGGGGAGGTTACCGGCAGGGCGGAAGGTGATTCGTACGAAATGGA
TTTTCAAGCGAAAACTGAAGGAGGACAGCAGCGTGGCACGCTACAAAGCG
CGACTGATGGCTCAAGGCTTTTCACAGGTGGAGGGGGAAGATTTCTTTGA
AACCAGTGCTCCCGTAGCTCGCATGCCGACGTTGCGTACTGTTTTTAGCC
TGGCTGCCGAGCATTATTTTGAATTAGAAGGTATAGATATAGATGAAGCG
TATTTGAGCGCCCCGGTAGAAGAAGAGCTGTTTGTTATGGAGGAAGAATG
GAGGGCATTGGTGGAAAATGGAACATGGGAAAGCGAAGACCCGGGGAGGT
TACCGGCAGGGCGGAAGGTGATTCGTACGAAATGGATTTTCAAGCGAAAA
CTGAAGGAGGACAGCAGCGTGGCACGCTACAAAGCGCGACTGATGGCTCA
AGGCTTTTCACAGGTGGAGGGGGAAGATTTCTTTGAAACCAGTGCTCCCG
TAGCTCGCATGCCGACGTTGCGTACTGTTTTTAGCCTGGCTGCCGAGCAT
TATTTTGAATTAGAAGGTATAGATATAGATGAAGCGTATTTGAGCGCCCC
GGTAGAAGAAGAGCTGTTTGTT
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