mRNA_H-paniculata_contig50146.12259.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50146.12259.1
Unique NamemRNA_H-paniculata_contig50146.12259.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50146.12259.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 64.3 bits (155), Expect = 8.310e-9
Identity = 42/136 (30.88%), Postives = 69/136 (50.74%), Query Frame = 1 
Query:  148 CGRCGQRGHDLYACLQVA-DEDACLA--------EAETEEVLSVDSEGLEFRKVGGTEIWICDNGATKHMTHDSDFLFNYQEC-DRHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQVAFIPLLSHHLLSLG 525
            C  C + GH +  C +   DED  +         E+ TE   S +    E   +   ++WI D+GA++HMTH S+++ N Q   D HV L DG +  + G G +++Q   D + +   L  V ++P L+ +L S+G
Sbjct:  229 CFYCHKLGHYIKDCRKKRRDEDQGIRSKEKQKNNESNTEAAFSAEVIEKEILNLEVKDVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
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BLAST of mRNA_H-paniculata_contig50146.12259.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.380e-6
Identity = 37/132 (28.03%), Postives = 62/132 (46.97%), Query Frame = 1 
Query:  148 CGRCGQRGHDLYACLQVADEDACLAEAETEEVLSVDSEGLEFRKVGGTEIWICDNGATKHMTHDSDFLFNYQECDRHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQVAFIPLLSHHLLSLGKFADFG 543
            C +CG+ GH   AC    + D  LA  ET +                 +IWI DNG+++H+ +D+ +L + +ECD      +G  L I   G + L+        +++L+ V F   + H+L+S G+    G
Sbjct:  258 CHKCGEVGHLRAACPARNNPDIVLAVNETLDA--------------SDDIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVG 375
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BLAST of mRNA_H-paniculata_contig50146.12259.1 vs. uniprot
Match: A0A5A7U112_CUCME (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7U112_CUCME)

HSP 1 Score: 54.7 bits (130), Expect = 1.280e-5
Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:  298 WICDNGATKHMTHDSDFLFNYQECDRH-VRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQVAFIPLLSHHLLSLGKFADFG 543
            WI D+G   HMTH+ DFL N+Q+ DR  V L D +   ++G G +  Q      ++ M LT V ++P L  +L+SL +    G
Sbjct:   68 WIMDSGCMYHMTHNRDFLINFQKSDREKVLLGDNSTYDVKGTGSV--QIATHDRMIKM-LTNVRYVPELKRNLISLNELDKSG 147
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BLAST of mRNA_H-paniculata_contig50146.12259.1 vs. uniprot
Match: A0A397FGU2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FGU2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.140e-5
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  283 GGTEIWICDNGATKHMTHDSDFLFNYQECDRHVRLADGNRLPIEGVGMLFLQFRFDSEIVLMKLTQVAFIPLLSHHL 513
            G  ++ I D+GA+ HMT   + LF+ +EC RHVRLA+  R+ ++ +G   ++    S+      T V ++P L H L
Sbjct:  193 GEEQVTIIDSGASSHMTGYHNILFDIEECQRHVRLANHQRIAVDMMGKFRIKNPNGSKCFF---TNVLYVPTLRHTL 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50146.12259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME8.310e-930.88Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A225WMA1_9STRA5.380e-628.03CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A5A7U112_CUCME1.280e-537.35Retrovirus-related Pol polyprotein from transposon... [more]
A0A397FGU2_9STRA7.140e-535.06Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50146contigH-paniculata_contig50146:541..1173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size543
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.9726222-CDS-H-paniculata_contig50146:540..8491622930475.9726222-CDS-H-paniculata_contig50146:540..849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50146 541..849 -
1691481308.635176-CDS-H-paniculata_contig50146:540..8491691481308.635176-CDS-H-paniculata_contig50146:540..849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50146 541..849 -
1622930475.9876397-CDS-H-paniculata_contig50146:939..11731622930475.9876397-CDS-H-paniculata_contig50146:939..1173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50146 940..1173 -
1691481308.6473148-CDS-H-paniculata_contig50146:939..11731691481308.6473148-CDS-H-paniculata_contig50146:939..1173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50146 940..1173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50146.12259.1prot_H-paniculata_contig50146.12259.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50146 541..1173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50146.12259.1

>prot_H-paniculata_contig50146.12259.1 ID=prot_H-paniculata_contig50146.12259.1|Name=mRNA_H-paniculata_contig50146.12259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
KSAASKSADTDRSSNSTNGGRSAGTKSKQPRCFICRSKDHLRRECPNMYC
GRCGQRGHDLYACLQVADEDACLAEAETEEVLSVDSEGLEFRKVGGTEIW
ICDNGATKHMTHDSDFLFNYQECDRHVRLADGNRLPIEGVGMLFLQFRFD
SEIVLMKLTQVAFIPLLSHHLLSLGKFADFG
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mRNA from alignment at H-paniculata_contig50146:541..1173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50146.12259.1 ID=mRNA_H-paniculata_contig50146.12259.1|Name=mRNA_H-paniculata_contig50146.12259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at H-paniculata_contig50146:541..1173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCCGCTGCTTCAAAATCCGCCGACACCGATCGTTCTAGCAACAGCAC
CAACGGTGGCCGGTCCGCTGGCACCAAGAGCAAGCAGCCAAGATGCTTCA
TCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCCCAACATGTACTGT
GGGCGATGTGGTCAGCGTGGTCACGACTTGTACGCGTGCCTCCAGGTCGC
CGATGAAGATGCTTGTTTGGCTGAAGCTGAAACTGTGGTTGAACTTGAAG
AGGCGCTCAAGGCTGACCTGGGCGAAGACGAGTTCATCGCGGCATACATC
GCGTCGACTTCCACCATAGGCAAGGAAGAGGTTTTATCTGTGGACTCTGA
GGGGTTAGAATTTCGTAAGGTGGGGGGGACGGAAATCTGGATTTGTGATA
ATGGTGCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTAATTAC
CAGGAATGTGATAGGCATGTACGCCTTGCAGATGGTAATCGTCTCCCGAT
CGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGATTG
TTTTGATGAAGTTAACTCAGGTTGCATTCATACCACTTCTCAGTCATCAC
CTTCTATCTCTAGGGAAATTCGCGGACTTTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig50146:541..1173-

>mRNA_H-paniculata_contig50146.12259.1 ID=mRNA_H-paniculata_contig50146.12259.1|Name=mRNA_H-paniculata_contig50146.12259.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig50146:541..1173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATCCGCTGCTTCAAAATCCGCCGACACCGATCGTTCTAGCAACAGCAC
CAACGGTGGCCGGTCCGCTGGCACCAAGAGCAAGCAGCCAAGATGCTTCA
TCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCCCAACATGTACTGT
GGGCGATGTGGTCAGCGTGGTCACGACTTGTACGCGTGCCTCCAGGTCGC
CGATGAAGATGCTTGTTTGGCTGAAGCTGAAACTAAATCCGCTGCTTCAA
AATCCGCCGACACCGATCGTTCTAGCAACAGCACCAACGGTGGCCGGTCC
GCTGGCACCAAGAGCAAGCAGCCAAGATGCTTCATCTGCCGCTCCAAGGA
TCACCTTCGACGGGAATGCCCCAACATGTACTGTGGGCGATGTGGTCAGC
GTGGTCACGACTTGTACGCGTGCCTCCAGGTCGCCGATGAAGATGCTTGT
TTGGCTGAAGCTGAAACTGAAGAGGTTTTATCTGTGGACTCTGAGGGGTT
AGAATTTCGTAAGGTGGGGGGGACGGAAATCTGGATTTGTGATAATGGTG
CAACGAAACACATGACCCATGATTCAGATTTTCTTTTTAATTACCAGGAA
TGTGATAGGCATGTACGCCTTGCAGATGGTAATCGTCTCCCGATCGAAGG
AGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGATTGTTTTGA
TGAAGTTAACTCAGGTTGCATTCATACCACTTCTCAGTCATCACCTTCTA
TCTCTAGGGAAATTCGCGGACTTTGGTGAAGAGGTTTTATCTGTGGACTC
TGAGGGGTTAGAATTTCGTAAGGTGGGGGGGACGGAAATCTGGATTTGTG
ATAATGGTGCAACGAAACACATGACCCATGATTCAGATTTTCTTTTTAAT
TACCAGGAATGTGATAGGCATGTACGCCTTGCAGATGGTAATCGTCTCCC
GATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGACTCCGAGA
TTGTTTTGATGAAGTTAACTCAGGTTGCATTCATACCACTTCTCAGTCAT
CACCTTCTATCTCTAGGGAAATTCGCGGACTTTGGT
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