mRNA_H-paniculata_contig5013.12258.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5013.12258.1
Unique NamemRNA_H-paniculata_contig5013.12258.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: D7FII4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII4_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 1.400e-118
Identity = 186/212 (87.74%), Postives = 197/212 (92.92%), Query Frame = 1 
Query:  898 GSRMLVEPPRPAAAPKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAGPGLSAGPIVA---RPAGAPPPQGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGEQV 1524
            GS+M  EPPRPAAAPKFGHLIVKCVKGI LKAGSGMFGKADPYCKVV+GTQEFSTRPHK GGKNPVWNEEHAFEISSEKEAMIE+FDKENVGQDKFMGELKVNIMDWV+ GSFKGD+E+ DK+ NGVGK+ +AVKFERPG AGAGPGLSAGP+VA   RPAGAP  QGTRDPNSKFSD+EIWEAF AFDLDKNKFVGAAEIRHVLVNIGEQV
Sbjct:  310 GSKMGSEPPRPAAAPKFGHLIVKCVKGIELKAGSGMFGKADPYCKVVIGTQEFSTRPHKTGGKNPVWNEEHAFEISSEKEAMIEIFDKENVGQDKFMGELKVNIMDWVSKGSFKGDLEMLDKSGNGVGKIHVAVKFERPGAAGAGPGLSAGPVVATGARPAGAPKAQGTRDPNSKFSDEEIWEAFVAFDLDKNKFVGAAEIRHVLVNIGEQV 521
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A835ZJR9_9STRA (Putative calcineurin subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJR9_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.300e-82
Identity = 142/218 (65.14%), Postives = 166/218 (76.15%), Query Frame = 1 
Query:  919 PPRPAAAPKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAGPG-----------LSAGPIV-----ARPAGAPPPQGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGEQV 1524
            PPRPA AP FGHLIVK V+G++L AG+G+FGKA PYC++ VG+Q F T+PH +GGK PVWNEEHAFEIS+EKE  +E+ DK++VGQDKFMG   +NI++WVASG FKGD+ + DKA   VGKV LAVKFERPG   AGPG            S  PI      A PAGAPP + TRDPN KF+DDEIWEAF AFDLDKN F+GAAEIRHVL+NIGEQV
Sbjct:   42 PPRPAPAPIFGHLIVKAVRGVDLSAGAGIFGKASPYCRLTVGSQRFETQPHGSGGKAPVWNEEHAFEISNEKEMEMEILDKQSVGQDKFMGAALLNIVEWVASGGFKGDVTLTDKAGAPVGKVTLAVKFERPG---AGPGGLHHTYPLPNLTSTSPISPSMTGAVPAGAPPREATRDPNGKFTDDEIWEAFLAFDLDKNHFIGAAEIRHVLINIGEQV 256
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A7S3M8S8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8S8_9STRA)

HSP 1 Score: 239 bits (610), Expect = 7.300e-70
Identity = 122/208 (58.65%), Postives = 150/208 (72.12%), Query Frame = 1 
Query:  937 APKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTA------------GAGPGLSAGPIVARPAGAPPPQGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGEQV 1524
            APKFG L+VKC++G++LKAG GMFGKADPY K+ +GTQE+ST+P+  GGKNP+WNEE  F+IS+EKE  IEV DKE VG DKFMG  KV+I++W+A+G F+GD+++ DK    VG+V +A +FERP  A            GAG     GP+V   A        RDP  KF+DDEI EAF AFDLDKN FVGAAEIRHVL+NIGEQV
Sbjct:    4 APKFGRLVVKCLRGVDLKAGQGMFGKADPYSKLRIGTQEYSTKPNPGGGKNPIWNEEFTFDISNEKEMEIEVLDKETVGNDKFMGRCKVSIIEWIANGRFEGDLDLQDKMNKPVGRVSIACRFERPNAAPGGSNALVVAGEGAGYAAPGGPVVLPNANMA--DSVRDPAGKFTDDEILEAFKAFDLDKNNFVGAAEIRHVLINIGEQV 209
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A8J2S3Z5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S3Z5_9STRA)

HSP 1 Score: 223 bits (569), Expect = 1.610e-62
Identity = 115/207 (55.56%), Postives = 144/207 (69.57%), Query Frame = 1 
Query:  940 PKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGA----GPGLSAGPIV--------ARPAGAPPPQGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGEQV 1524
            PKFG L V  V+G +LKAG  M+G+ADPY K+ +G Q F+T PH  GGK+PVWN +H FEIS+EKE ++EVFDKE VG DKFMG  +V+I+DW+A+G+F GD+++ D ++  VGKV L   F RPG  G     G    +  +V        A+  GA      RDPN KF+D+EIWEAF AFDLDKN FVGAAEIRHVL+NIGEQV
Sbjct:  135 PKFGQLQVHVVRGSSLKAGQSMYGRADPYAKLTLGNQVFATNPHANGGKDPVWNADHTFEISTEKELLLEVFDKEQVGNDKFMGHARVSIVDWIAAGTFTGDVDVTDMSDRPVGKVNLKATFFRPGEGGELVAQGATKESTDLVQMSNEAGAAKDVGAAQAGPARDPNGKFTDEEIWEAFTAFDLDKNNFVGAAEIRHVLINIGEQV 341
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A6S8C5R6_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8C5R6_9STRA)

HSP 1 Score: 220 bits (560), Expect = 2.620e-60
Identity = 119/239 (49.79%), Postives = 146/239 (61.09%), Query Frame = 1 
Query:  940 PKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAG-----------------PGLSA-------------------GPIVARPAGAPP--------PQGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGEQV 1524
            PKFG L V  ++ + LKAG  M+GKADPY K+ VGTQ FS+ PH  GGK+P+WN EH FEIS+EKE ++E+FDKE VG DKFMG+  VNI+DW+A+GSFKGD+E+ DK++  VG++ +A  F RPG   A                  PG  A                   GP       A P         +  RDP  KF+D+EIWEAF AFDLDKN FVGAAEIRHVL+NIGEQV
Sbjct:  214 PKFGSLQVNLLRAVGLKAGQSMYGKADPYTKLTVGTQVFSSNPHIGGGKDPIWNAEHVFEISTEKEMLVEIFDKETVGSDKFMGQANVNIVDWIAAGSFKGDLELRDKSDRPVGRLQMAATFSRPGDKDASDNNKAIVPMSPDSPLGSPGSIATPPNNAKKARLNQVVPIMDGPTSPNTKSAAPGEIQYNKDEEARRDPAGKFTDEEIWEAFTAFDLDKNNFVGAAEIRHVLINIGEQV 452
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A4Q5XWQ3_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5XWQ3_9DELT)

HSP 1 Score: 208 bits (529), Expect = 1.850e-58
Identity = 108/187 (57.75%), Postives = 136/187 (72.73%), Query Frame = 1 
Query:  991 AGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAGPGLSAGP---------IVARPAGAPPPQGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGEQV 1524
            +G GMFGKADP+ ++ VGTQEFST+P+  GGKNP+WNEE +F+IS+EKE  IEV DKE VG DKFMG  KV+I++W+A+G F+GD+++ DK    VG + L+VKFERP   GA   L AG          +V +P GA   +  RDP  KF+D+EI EAF AFDLDKN +VGAAEIRHVL+NIGE V
Sbjct:   22 SGQGMFGKADPFSRLRVGTQEFSTKPNPGGGKNPIWNEEFSFDISNEKEMEIEVLDKEQVGNDKFMGRCKVSIIEWIANGRFEGDLDLQDKTNKPVGSISLSVKFERPTPGGADTALVAGASVPGSAQQQLVVKPGGASGME-VRDPAGKFTDEEILEAFKAFDLDKNNYVGAAEIRHVLINIGETV 207
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A7S1CHH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHH1_9STRA)

HSP 1 Score: 191 bits (485), Expect = 3.490e-53
Identity = 107/202 (52.97%), Postives = 128/202 (63.37%), Query Frame = 1 
Query:  943 KFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAG----PGLSAGPIVARPAGAPPP----QGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGEQV 1524
            KFG L VK V G+ LKA S + GKADPY KV +G QE  TR H  GG NP W +   F+IS+EKE  +EVFDKENVGQDKF+G  +   + W+   SF+G++++ D      G V L+VKFE+P   G      PG  A        GAPPP    +  RDPN KF+D EI EAF AFDLD N FVGAAEIRHVL+NIGE V
Sbjct:   40 KFGRLHVKVVAGVELKAPS-LVGKADPYVKVRIGAQEHQTRVHSGGGTNPTWGDTFTFDISNEKEIELEVFDKENVGQDKFVGRSRTGFLGWIQRQSFEGNVDLKDDKGQPAGAVTLSVKFEKPTAGGPAMPPPPGGMAXXXXXXXXGAPPPGMDDEPARDPNGKFTDREIKEAFDAFDLDHNSFVGAAEIRHVLINIGENV 240
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: W4GRQ0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRQ0_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.020e-52
Identity = 107/208 (51.44%), Postives = 136/208 (65.38%), Query Frame = 1 
Query:  928 PAAAPKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAGPGLSAGPIVARPAGAPPPQGT-----------RDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGE 1518
            P A P+FG L VK +KG+ LK+  G    ADPYCK+ VGTQ F T+ H+ GGKNP WNE   F IS+EKE ++E++DKE  G D+FMG+ +V+++ W+A G F+GD+++ D+     GKV   VKF +P    AGP + A P +  P    PPQG            RDPN KFSD EI EAF AFDLD N +VGAAEIRHVL+NIGE
Sbjct:  321 PGAVPRFGKLSVKLLKGLELKS-LGTLQTADPYCKLTVGTQTFQTKVHEKGGKNPTWNETFEFSISTEKELIMELYDKEQSGTDRFMGQCRVDLIAWIAKGGFEGDLDLKDEQNQDAGKVAAVVKFTKPVVGPAGP-IKAPPQII-PGAVGPPQGMGAPPAAPAEPPRDPNGKFSDSEILEAFKAFDLDHNNYVGAAEIRHVLINIGE 525
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A024TF60_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TF60_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.700e-52
Identity = 109/208 (52.40%), Postives = 134/208 (64.42%), Query Frame = 1 
Query:  928 PAAAPKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAGPGLSAGPIVARPAGAPPPQGT-----------RDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGE 1518
            P A P+FG L VK +KG+ LK+  G    ADPYCKV VGTQ F T+ H+ GGK P WNE   F IS+EKE ++EV+DKE  G D+FMG+ +V+++ W+A G F+GD+ I D+     GKV   VKF +P    AGP + A P +  P    PPQG            RDPN KFSD EI EAF AFDLD N +VGAAEIRHVL+NIGE
Sbjct:  340 PGAVPRFGKLSVKLLKGLELKS-LGTLQTADPYCKVTVGTQTFQTKVHEKGGKTPTWNETFEFSISTEKELIMEVYDKEQNGNDRFMGQTRVDLIAWIAKGGFEGDISIKDEQNQDAGKVAAVVKFTKPVVGPAGP-VKAPPQII-PGAVAPPQGXXXXXXXXXXXXRDPNGKFSDSEILEAFKAFDLDHNNYVGAAEIRHVLINIGE 544
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BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Match: A0A485L5Z3_9STRA (Aste57867_16513 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5Z3_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.280e-51
Identity = 101/202 (50.00%), Postives = 133/202 (65.84%), Query Frame = 1 
Query:  940 PKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQEFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELKVNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAGPGLSAGPIVARPAGAPPPQGT---------RDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHVLVNIGE 1518
            P+FG L VK +KG+ LK+  G    ADPYCK+ +G+Q F T+ H+ GGKNP WNE   F IS+EKE ++E++DKE  G D+FMG+ +V+++ W+A G F+GD+++ D+ +   GKV   VKF +P    AGP  +   I+    G PP  G          RDPN KFSD EI EAF AFDLD N +VGAAEIRHVL+NIGE
Sbjct:  325 PRFGKLSVKLLKGLELKS-LGTLQTADPYCKLTIGSQSFQTKVHEKGGKNPTWNETFEFSISTEKELILELYDKEQSGNDRFMGQTRVDLIPWIAKGGFEGDIDMKDEQDQDAGKVSAVVKFTKPVVGPAGPMKAPPQIIPGSVGPPPAAGXXXXXXXEPPRDPNGKFSDSEILEAFKAFDLDHNNYVGAAEIRHVLINIGE 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5013.12258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FII4_ECTSI1.400e-11887.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZJR9_9STRA1.300e-8265.14Putative calcineurin subunit B n=1 Tax=Tribonema m... [more]
A0A7S3M8S8_9STRA7.300e-7058.65Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8J2S3Z5_9STRA1.610e-6255.56Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A6S8C5R6_9STRA2.620e-6049.79Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A4Q5XWQ3_9DELT1.850e-5857.75Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A7S1CHH1_9STRA3.490e-5352.97Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
W4GRQ0_9STRA1.020e-5251.44Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024TF60_9STRA1.700e-5252.40Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485L5Z3_9STRA1.280e-5150.00Aste57867_16513 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5013contigH-paniculata_contig5013:159..5160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue1.5e-102
Seed eggNOG ortholog2880.D7FII4
KEGG rclassRC00004,RC00037
KEGG koko:K02183,ko:K06268,ko:K08193,ko:K13510
KEGG TC2.A.1.14
KEGG ReactionR01318,R03437,R03438,R09036
KEGG Pathwayko00564,ko00565,ko01100,ko04010,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04310,ko04360,ko04370,ko04371,ko04380,ko04626,ko04650,ko04658,ko04659,ko04660,ko04662,ko04713,ko04720,ko04722,ko04724,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05014,ko05031,ko05034,ko05133,ko05152,ko05166,ko05167,ko05200,ko05214,ko05418,map00564,map00565,map01100,map04010,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04310,map04360,map04370,map04371,map04380,map04626,map04650,map04658,map04659,map04660,map04662,map04713,map04720,map04722,map04724,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05014,map05031,map05034,map05133,map05152,map05166,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759,KOG0034@2759
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-28_000400.1
EC2.3.1.23,2.3.1.67
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko01009,ko02000,ko03036,ko04131,ko04147
Exons7
Model size1530
Cds size1530
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.8371623-CDS-H-paniculata_contig5013:158..2601622930475.8371623-CDS-H-paniculata_contig5013:158..260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 159..260 -
1691481308.560061-CDS-H-paniculata_contig5013:158..2601691481308.560061-CDS-H-paniculata_contig5013:158..260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 159..260 -
1622930475.857015-CDS-H-paniculata_contig5013:1783..18961622930475.857015-CDS-H-paniculata_contig5013:1783..1896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 1784..1896 -
1691481308.5728185-CDS-H-paniculata_contig5013:1783..18961691481308.5728185-CDS-H-paniculata_contig5013:1783..1896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 1784..1896 -
1622930475.8723133-CDS-H-paniculata_contig5013:2695..28101622930475.8723133-CDS-H-paniculata_contig5013:2695..2810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 2696..2810 -
1691481308.5840292-CDS-H-paniculata_contig5013:2695..28101691481308.5840292-CDS-H-paniculata_contig5013:2695..2810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 2696..2810 -
1622930475.8881345-CDS-H-paniculata_contig5013:3175..33011622930475.8881345-CDS-H-paniculata_contig5013:3175..3301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 3176..3301 -
1691481308.5920048-CDS-H-paniculata_contig5013:3175..33011691481308.5920048-CDS-H-paniculata_contig5013:3175..3301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 3176..3301 -
1622930475.9018989-CDS-H-paniculata_contig5013:3458..35421622930475.9018989-CDS-H-paniculata_contig5013:3458..3542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 3459..3542 -
1691481308.6042192-CDS-H-paniculata_contig5013:3458..35421691481308.6042192-CDS-H-paniculata_contig5013:3458..3542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 3459..3542 -
1622930475.916082-CDS-H-paniculata_contig5013:3868..39861622930475.916082-CDS-H-paniculata_contig5013:3868..3986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 3869..3986 -
1691481308.6142957-CDS-H-paniculata_contig5013:3868..39861691481308.6142957-CDS-H-paniculata_contig5013:3868..3986Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 3869..3986 -
1622930475.9296243-CDS-H-paniculata_contig5013:4288..51601622930475.9296243-CDS-H-paniculata_contig5013:4288..5160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 4289..5160 -
1691481308.6245787-CDS-H-paniculata_contig5013:4288..51601691481308.6245787-CDS-H-paniculata_contig5013:4288..5160Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5013 4289..5160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5013.12258.1prot_H-paniculata_contig5013.12258.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5013 159..5160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5013.12258.1

>prot_H-paniculata_contig5013.12258.1 ID=prot_H-paniculata_contig5013.12258.1|Name=mRNA_H-paniculata_contig5013.12258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=510bp
MSVPPPRGPPPRGPPPRGPPPTGAPPAGPPPRGPPPRGPPPRGPPPGGPP
AVGGSSPRGPPPRGPPPGSPTAGVNGGPPPGSPPRGPPPRGPPPRGPPPR
GSPPGPGAAGSPRGPPPRGPPPRGPPPGPPASGPPGSPPGMAPRGPPPGA
PPGAAGGVPSPRGPPPRGPPPRGPPPRGAPPGMAPPGMPPGAAPGSPMGS
PRGPPPRGPPPRGPPPRGPPPRGPPPGAGTPRGPPRVVPQGGPPDGGAMV
VSGGPPRGAPARGPPSGPPRGMPPRGPPPRGPPPRGPPPGLGPPGPPPVG
SRMLVEPPRPAAAPKFGHLIVKCVKGINLKAGSGMFGKADPYCKVVVGTQ
EFSTRPHKAGGKNPVWNEEHAFEISSEKEAMIEVFDKENVGQDKFMGELK
VNIMDWVASGSFKGDMEIFDKAENGVGKVFLAVKFERPGTAGAGPGLSAG
PIVARPAGAPPPQGTRDPNSKFSDDEIWEAFCAFDLDKNKFVGAAEIRHV
LVNIGEQVG*
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mRNA from alignment at H-paniculata_contig5013:159..5160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5013.12258.1 ID=mRNA_H-paniculata_contig5013.12258.1|Name=mRNA_H-paniculata_contig5013.12258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5002bp|location=Sequence derived from alignment at H-paniculata_contig5013:159..5160- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGTTCCACCACCAAGAGGCCCACCGCCTCGGGGCCCTCCCCCAAG
GGGACCTCCCCCAACAGGGGCACCACCCGCGGGTCCTCCACCAAGAGGCC
CACCCCCCCGCGGGCCCCCACCACGCGGCCCTCCTCCAGGAGGACCGCCC
GCCGTTGGGGGATCTTCGCCAAGAGGGCCACCACCCAGAGGACCTCCACC
AGGTTCCCCCACGGCTGGGGTCAATGGAGGACCCCCACCAGGCTCCCCGC
CTCGGGGGCCACCACCTCGAGGGCCACCACCTCGAGGGCCCCCTCCCCGC
GGATCACCGCCAGGCCCCGGTGCGGCTGGAAGTCCACGCGGGCCACCCCC
CCGCGGGCCACCACCTCGCGGACCACCTCCTGGGCCACCCGCTTCTGGGC
CGCCGGGATCTCCGCCGGGGATGGCGCCCCGTGGTCCCCCCCCCGGCGCG
CCGCCTGGCGCTGCCGGGGGGGTGCCTTCCCCAAGAGGACCGCCACCAAG
GGGACCACCGCCAAGGGGACCGCCTCCGAGAGGCGCTCCGCCAGGCATGG
CTCCGCCCGGTATGCCCCCGGGGGCGGCGCCGGGGTCACCTATGGGATCG
CCGAGGGGTCCGCCGCCCAGAGGGCCACCGCCGAGAGGGCCGCCTCCACG
GGGACCGCCACCGAGGGGCCCTCCGCCTGGGGCTGGGACACCGAGAGGGC
CTCCGAGAGTGGTTCCGCAGGGAGGGCCGCCGGACGGGGGTGCGATGGTG
GTGTCAGGGGGACCGCCCAGGGGGGCTCCGGCAAGGGGTCCACCAAGTGG
GCCGCCGAGGGGAATGCCGCCTAGAGGGCCGCCACCGCGTGGCCCGCCAC
CGCGGGGACCTCCTCCAGGTTTGTGCTGTGTTCTGCGAGAATCGTTTTTG
ATGATGCGCTAAAGTAATGTTGAAGAGGTTTTTAGTGACTGAGCATTGGT
GGGGTAGAGGATCGGTAGAGGTCTTCTCTGCGCTTAAGGGGCTTTGCCTC
TTTCTAGCGTATAGTGCAGAAGAATGTGTAGCATGGTGTATATTTCGTGT
CGGTTTATTGTACATTTTGTTTTACCCGCTATTGTAGTAATACTTTAACG
CTTGCCAACGAGAAATCGCGAGCATCGTGAAGCCGATACCCACCGTATGG
AACGAACGCTATACGCACAGGAAGGGGGCCGCCCGGCCCTCCACCTGTCG
GGTCAAGAATGTTGGTGGAACCTCCACGGCCAGCGGCCGCTCCAAAGTTC
GGTCATCTTATTGTGAAATGTGTCAAAGGAATAAATCTCAAGGTAGGGGT
GATGATGTTATTGGTTTTGGCATGATTCTGTCATATATTTATGGATAAAA
CTGAGCGACCAGCTGTTTTTATAAAGCTCTTTGAAATTAGCCGTCTTTAC
TAGCTTTGATATTCTCCGGATGGTATTGGGCGCACACTATCAGTTGCTTA
CATATCTATGCAAGCATAGGATATGAAGACGATCACCACGCCAATTGCGA
TGTACATCTTCTGTAGCCTCCTGTGGCCGAGCGTATGCACGACTACCCTG
CTAGCCGTGCGCACAGTAAAACCACATCGCCAACTGTACTCGCGCGTACC
ATGTTTCATCTTCCGCAGGCGGGATCAGGAATGTTTGGAAAGGCGGACCC
CTACTGCAAAGTTGTCGTCGGAACGCAGGAATTCTCCACAAGACCGCACA
AGGTACTGCTACGACATATACAATGAATAGAGGAGAGTGAGCGAACGGCC
TGGGCGTGTTGCACCTAATGCTTCCGGTAAAAAACGCAAAGTGCATAAAC
TTCTTCTAGAGATGGATGATGCGGGTATTGCCTTGTCTTTTGTTCCTTCG
TGTTGGCAGGCGGGCGGCAAGAACCCTGTGTGGAATGAAGAGCACGCGTT
CGAGATTTCGTCGGAGAAGGAGGCCATGATCGAGGTTTTTGACAAGGAAA
ACGTCGGACAAGACAAATTCATGGGAGAGCTGAAGGTGCTTGAGCGACTC
CCACCACACAACGACTGTTGTTGTACAGTGCTCAGCAGCTAGCTGTACCT
GTAGCTATCGCTCAGTTTGCTGCACGTTGGTTTGGATCGTCTGCACTATA
CGGCAGCATTGCAAAGCGTGAGGGGAAGGAGGCAGATGAGGAGGTTTTAA
GGAAACACGGTTAATTTCCATGTCTCCCCGCTCTCCGCAATATTACAGTA
CAGATGTGCGTTATGCACGTGGTGTATGAACCACAGTGCATCCTTCCTGC
TTCAGAGGGGTCCCCTATGTACGATGTCTGAGGCGAAGTCTACTGCAACC
TACGTGAGCACAGCTATTTTTTGCTTTTTCTTGGCTCCTCTTTTGTTTAG
GTGAACATCATGGATTGGGTGGCGAGCGGATCTTTCAAGGGGGACATGGA
GATTTTCGACAAAGCCGAAAATGGAGTGGGAAAAGTTTTCCTTGCCGTTA
AATTCGAACGACCAGGTAGGATGATTACAGTTAGTGTTCAGGGGTAGGGC
TGGGGTTTTACACATGTACATGACTTCCCCCCCTCAAATAAGCGGCAAAC
AGGGATACGGCTAATGGTGATAGGCTTGAGGATTATTCTAAAGCACGTGC
CTCTCCCTTTGCCAACTAAACGGGAGAGCGAAAGATTGCATGTTTGATTA
TCGTTAGTCCCGGCGTGTACATAGTGCTATCTACTGATTACCTAGTTCAA
GAATCAAGTAAACAGTGTAGCGTATCTTGATGTAGCGTATCTATCTCGAC
TCTACCCTACTTCCTCACTTCATCTGGGTGTCAAATGAGGAGGTGCACCT
AATCCTGGAAACAGCTAGTCGGCCATGTCTAGGCCCACAGAGACATTGTA
CTGTTAGCATACTTACCGATGGGGAACCAACAACCAACCAACTCACTGAA
CGACGACTCGCCAGTTTTGTGCAATAAAGAAGAAGTACGACAAACAGGGT
CACAATATGCATATCAACCTTTTCGGGACGCAGCCGTCTGAGATGGACAC
TCTAATATTTTTTCTGTTTTGTTTTTTTTCCACCTAATAAATAGAAAATA
GGTTACACCAGACCTCGGGACACAAACAATCACAGATTTTAGTTTCTGGG
TACCTAGATATATCTGCTTTTGGGCAGCCTTTTGGAACGCTCGAGAAACT
GGTGATTTTCAGGACGAATCGGATATATTTGAATCTTGAGTGATGCTTCC
ACGTACCGCATCCTGAAGGTTTCAACCAGGAACTAGTAACGTATCAGTTA
TTCGTATTTGTCAGGGACCGCGGGCGCTGGACCGGGGCTATCGGCAGGGC
CTATAGTTGCCAGACCAGCGGGAGCACCTCCTCCCCAAGGAACGAGAGAT
CCAAATAGCAAATTTAGCGATGATGAGGTAGGACTGTACCTGATAGAGGT
CTTTGTTTGGTGAGACACTACTAGTTCCCATTCAAGGTACAGTGCCTCGC
ACGTCCGTTGCATCTGGAGTTTATGCAGCACCTCTTCCAACCAAGCACGG
AGCGAGTACGGAAATCACGACAATCGCAAACAATGGGGCGGACGTCGTTG
TTCGGTGTTACCGAAGTAGACATGACTGTTTTAGTAGCTCTTGGAGATAA
AATGAGGGGTGCGCGGAACACTGCAGGCGATGAAAAAGATTGTTTTCACC
TGATGCGACACAAGCATGTACAATAGCGTGAGTAGGAGGGGGGGGGGGGG
CGGGTGCGCATCTTCAAGCTGCTGGATTCCTTTGTTATTATCCACAAACT
GATGACACGAAATGCTTATGTTTTGCATGCCGTAGCAGTTTGACCAGTGA
TCACGCATCCTCGGGAGGACGGAGCTTTGTTCCTATGAGAGCGATTTCTA
TTGGCAAATTATCGCTGATGGCGTGAGTAGGGAGTGAAGCGTTCTCGAGG
TACAACAGCGTCGCAGGGAGAGTTGCGAAGCGCAGGGTAAATCGGCGTCT
ATCTCTGTATGTGCCGATACATTGTGTTACACTGGAGTAAACACATGGAC
GATGGTGGATAAAACATTGTGCGCCATAGTTCTTGGGGTCGAAGCGTGTG
TACTCGGGAATGTTTGCAATTTGTCTTTGTGTATTTGCGTGTATTTTCGC
TGTGTTGGTTCAAGGCGATACGGATACTAAAGGGGTTCCTTGAAAGCTCA
ACGTTCGCGAGCAGCAAGTGCACGCATACTCCCATTATATCTGCTGCGTT
TTCTTGCCAAGTATCACTCGACATGAAGTCAGACAAACGTATTTGAAAGC
CACGTCTGTACTCTAACTATACGGTTTATACACCAGGCTACTTTCGATCC
TGAATATGTCATACCAACAGAGCTAGGGCCGCCGCTAGTAATGTGGATAT
TTGTTTCTCTTTACTGCTGTCTTCTTTTCCGCCTTTTTCTTCTACTCGAG
GTACCGCACTAAGATTTTGTGGGGAATACCGAAAAGCGTTTGGTAGGGTT
TACGAACCCCTATGGGCAAAAGTCAATCTTGGTCATTTTGTACATTTTTA
GAAGTTGCATAAGAAAAAATAATGAGAAAAAAAAAAGAAAAAAAAAAACA
CGAACATAAGTAGAAACGTGAGGGGGGGGAGCACAAAGTTCAGGAACGAC
CCGACCCGTTGAGCCAGTACTAGCAGGCGCATTTTTTGCAGATATAGTTG
GAAATATTCTGAAAAATTCCAGATTTTCGGGCTGTCATCAACAGCCGAAT
TATACCGCATAGAACTAGCCACCGTTGCTTTCGTGCTGGCCCCAAACAAG
AACAAAGGTTGAGAGCTCTTTCGGGTAAATTTTGGCTCTCAAGTGTCCGC
TCGAAAAATATTATGCTTCTTCAGATTTTCCAGATTTTGCCAAAAGTGTG
CCTGCTAGTGATGACTCTTATCTTCTACATAAAAACATGGACTTTTCCAG
ATCTGGGAGGCTTTCTGCGCCTTCGATTTGGACAAGAACAAGTTCGTGGG
CGCGGCGGAGATCCGACACGTACTCGTCAATATAGGAGAACAGGTGGGGT
GA
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Coding sequence (CDS) from alignment at H-paniculata_contig5013:159..5160-

>mRNA_H-paniculata_contig5013.12258.1 ID=mRNA_H-paniculata_contig5013.12258.1|Name=mRNA_H-paniculata_contig5013.12258.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3060bp|location=Sequence derived from alignment at H-paniculata_contig5013:159..5160- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGTTCCACCACCAAGAGGCCCACCGCCTCGGGGCCCTCCCCCAAG
GGGACCTCCCCCAACAGGGGCACCACCCGCGGGTCCTCCACCAAGAGGCC
CACCCCCCCGCGGGCCCCCACCACGCGGCCCTCCTCCAGGAGGACCGCCC
GCCGTTGGGGGATCTTCGCCAAGAGGGCCACCACCCAGAGGACCTCCACC
AGGTTCCCCCACGGCTGGGGTCAATGGAGGACCCCCACCAGGCTCCCCGC
CTCGGGGGCCACCACCTCGAGGGCCACCACCTCGAGGGCCCCCTCCCCGC
GGATCACCGCCAGGCCCCGGTGCGGCTGGAAGTCCACGCGGGCCACCCCC
CCGCGGGCCACCACCTCGCGGACCACCTCCTGGGCCACCCGCTTCTGGGC
CGCCGGGATCTCCGCCGGGGATGGCGCCCCGTGGTCCCCCCCCCGGCGCG
CCGCCTGGCGCTGCCGGGGGGGTGCCTTCCCCAAGAGGACCGCCACCAAG
GGGACCACCGCCAAGGGGACCGCCTCCGAGAGGCGCTCCGCCAGGCATGG
CTCCGCCCGGTATGCCCCCGGGGGCGGCGCCGGGGTCACCTATGGGATCG
CCGAGGGGTCCGCCGCCCAGAGGGCCACCGCCGAGAGGGCCGCCTCCACG
GGGACCGCCACCGAGGGGCCCTCCGCCTGGGGCTGGGACACCGAGAGGGC
CTCCGAGAGTGGTTCCGCAGGGAGGGCCGCCGGACGGGGGTGCGATGGTG
GTGTCAGGGGGACCGCCCAGGGGGGCTCCGGCAAGGGGTCCACCAAGTGG
GCCGCCGAGGGGAATGCCGCCTAGAGGGCCGCCACCGCGTGGCCCGCCAC
CGCGGGGACCTCCTCCAGGTTTATGAGCGTTCCACCACCAAGAGGCCCAC
CGCCTCGGGGCCCTCCCCCAAGGGGACCTCCCCCAACAGGGGCACCACCC
GCGGGTCCTCCACCAAGAGGCCCACCCCCCCGCGGGCCCCCACCACGCGG
CCCTCCTCCAGGAGGACCGCCCGCCGTTGGGGGATCTTCGCCAAGAGGGC
CACCACCCAGAGGACCTCCACCAGGTTCCCCCACGGCTGGGGTCAATGGA
GGACCCCCACCAGGCTCCCCGCCTCGGGGGCCACCACCTCGAGGGCCACC
ACCTCGAGGGCCCCCTCCCCGCGGATCACCGCCAGGCCCCGGTGCGGCTG
GAAGTCCACGCGGGCCACCCCCCCGCGGGCCACCACCTCGCGGACCACCT
CCTGGGCCACCCGCTTCTGGGCCGCCGGGATCTCCGCCGGGGATGGCGCC
CCGTGGTCCCCCCCCCGGCGCGCCGCCTGGCGCTGCCGGGGGGGTGCCTT
CCCCAAGAGGACCGCCACCAAGGGGACCACCGCCAAGGGGACCGCCTCCG
AGAGGCGCTCCGCCAGGCATGGCTCCGCCCGGTATGCCCCCGGGGGCGGC
GCCGGGGTCACCTATGGGATCGCCGAGGGGTCCGCCGCCCAGAGGGCCAC
CGCCGAGAGGGCCGCCTCCACGGGGACCGCCACCGAGGGGCCCTCCGCCT
GGGGCTGGGACACCGAGAGGGCCTCCGAGAGTGGTTCCGCAGGGAGGGCC
GCCGGACGGGGGTGCGATGGTGGTGTCAGGGGGACCGCCCAGGGGGGCTC
CGGCAAGGGGTCCACCAAGTGGGCCGCCGAGGGGAATGCCGCCTAGAGGG
CCGCCACCGCGTGGCCCGCCACCGCGGGGACCTCCTCCAGGTTTGGGGCC
GCCCGGCCCTCCACCTGTCGGGTCAAGAATGTTGGTGGAACCTCCACGGC
CAGCGGCCGCTCCAAAGTTCGGTCATCTTATTGTGAAATGTGTCAAAGGA
ATAAATCTCAAGGGGGCCGCCCGGCCCTCCACCTGTCGGGTCAAGAATGT
TGGTGGAACCTCCACGGCCAGCGGCCGCTCCAAAGTTCGGTCATCTTATT
GTGAAATGTGTCAAAGGAATAAATCTCAAGGCGGGATCAGGAATGTTTGG
AAAGGCGGACCCCTACTGCAAAGTTGTCGTCGGAACGCAGGAATTCTCCA
CAAGACCGCACAAGGCGGGATCAGGAATGTTTGGAAAGGCGGACCCCTAC
TGCAAAGTTGTCGTCGGAACGCAGGAATTCTCCACAAGACCGCACAAGGC
GGGCGGCAAGAACCCTGTGTGGAATGAAGAGCACGCGTTCGAGATTTCGT
CGGAGAAGGAGGCCATGATCGAGGTTTTTGACAAGGAAAACGTCGGACAA
GACAAATTCATGGGAGAGCTGAAGGCGGGCGGCAAGAACCCTGTGTGGAA
TGAAGAGCACGCGTTCGAGATTTCGTCGGAGAAGGAGGCCATGATCGAGG
TTTTTGACAAGGAAAACGTCGGACAAGACAAATTCATGGGAGAGCTGAAG
GTGAACATCATGGATTGGGTGGCGAGCGGATCTTTCAAGGGGGACATGGA
GATTTTCGACAAAGCCGAAAATGGAGTGGGAAAAGTTTTCCTTGCCGTTA
AATTCGAACGACCAGGTGAACATCATGGATTGGGTGGCGAGCGGATCTTT
CAAGGGGGACATGGAGATTTTCGACAAAGCCGAAAATGGAGTGGGAAAAG
TTTTCCTTGCCGTTAAATTCGAACGACCAGGGACCGCGGGCGCTGGACCG
GGGCTATCGGCAGGGCCTATAGTTGCCAGACCAGCGGGAGCACCTCCTCC
CCAAGGAACGAGAGATCCAAATAGCAAATTTAGCGATGATGAGGGACCGC
GGGCGCTGGACCGGGGCTATCGGCAGGGCCTATAGTTGCCAGACCAGCGG
GAGCACCTCCTCCCCAAGGAACGAGAGATCCAAATAGCAAATTTAGCGAT
GATGAGATCTGGGAGGCTTTCTGCGCCTTCGATTTGGACAAGAACAAGTT
CGTGGGCGCGGCGGAGATCCGACACGTACTCGTCAATATAGGAGAACAGG
TGGGGTGAATCTGGGAGGCTTTCTGCGCCTTCGATTTGGACAAGAACAAG
TTCGTGGGCGCGGCGGAGATCCGACACGTACTCGTCAATATAGGAGAACA
GGTGGGGTGA
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