mRNA_H-paniculata_contig5011.12255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5011.12255.1
Unique NamemRNA_H-paniculata_contig5011.12255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5011.12255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5011contigH-paniculata_contig5011:9654..11619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size420
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5011.12255.1prot_H-paniculata_contig5011.12255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5011 9654..11619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930475.3893926-CDS-H-paniculata_contig5011:9653..98361622930475.3893926-CDS-H-paniculata_contig5011:9653..9836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 9654..9836 -
1691481308.3761063-CDS-H-paniculata_contig5011:9653..98361691481308.3761063-CDS-H-paniculata_contig5011:9653..9836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 9654..9836 -
1622930475.406845-CDS-H-paniculata_contig5011:10343..105501622930475.406845-CDS-H-paniculata_contig5011:10343..10550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 10344..10550 -
1691481308.3845518-CDS-H-paniculata_contig5011:10343..105501691481308.3845518-CDS-H-paniculata_contig5011:10343..10550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 10344..10550 -
1622930475.425251-CDS-H-paniculata_contig5011:11589..116191622930475.425251-CDS-H-paniculata_contig5011:11589..11619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 11590..11619 -
1691481308.4019456-CDS-H-paniculata_contig5011:11589..116191691481308.4019456-CDS-H-paniculata_contig5011:11589..11619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5011 11590..11619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5011.12255.1

>prot_H-paniculata_contig5011.12255.1 ID=prot_H-paniculata_contig5011.12255.1|Name=mRNA_H-paniculata_contig5011.12255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
GFDDVQSLQEDTTEEDLRQANMKPGHVRRTIKALHRLRNASLISPGDPPP
WSPSCSSSPVPCVHFTMANPHVADPSAATEYEEKPRLTAMSRQHKLSRSN
TAWPSSSTLAVGAATPPPTKWPATTAVAATGAAASPRGTA
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mRNA from alignment at H-paniculata_contig5011:9654..11619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5011.12255.1 ID=mRNA_H-paniculata_contig5011.12255.1|Name=mRNA_H-paniculata_contig5011.12255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1966bp|location=Sequence derived from alignment at H-paniculata_contig5011:9654..11619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTCGATGATGTTCAGTCACTTCAAGAGGTACCGTATTTATTCAAGAG
CAGTCTTGCGTGAAACTTACCCACAAGTATAATGGGATTTGTCAATAGAC
GTTAACAACCGTGTATATAGCATCGTTCACCTGTATACGAACTTGGCATT
TCGGAAATTTTGGAAGTGCACGCTTATGTGTGTGTCCTGAAAGCTCTCGA
GGATCTCTGTACATGTGTTCTTACTCTCTGAATAATGTGTCTTCAAGTCG
ACAAGTTGTAGTTTTGGCTGACGTTGACGATGCGCATGCACGTGGGTAAT
GTGTGGAATTGATGTCTGGGCTACAGCTGCGTGGACCATCGGAAGGTTGC
GTGCTTGCGAGTGTGAAATGGGACAAGAGCATCCATCGAGCGTGCAGGAT
ATGTACACAGAGACTGCAACACAACATGTTGTGTTCGGCCGGATTGGAAG
TGACGTGTACGATTTTGATTCATTGATTTTGGTTTCAGACAATGTGCTCC
CTGTTTCGTTTGCTCGTTTCAACGCATGGTACACTTACCACCGGTAAACG
CTCACATTGCGTCAATTGGGGTTTGCCTCTTTGCGCAAAAATGATGATTC
TGTCGTATGTTTTGGCCCAATGTTTCGCTATAATAATTGAAATTCCCATA
CTTTGCTGGGGGTAACTTCGCTCACGCTCAGGACAACAAAAACACGTCAC
CGAGAATTTCGTCATCGATGTATTGAGTATTTGCATTATACATTTTGGGG
TCAATAAACTGAGGCATTACGACATACCCAGGGATAACTTGATGCAACGG
TTCGATTATTGTCAGCCGGATGTGCACAATCCGTTGCACAAGTTGCGATT
CCACCCGAATATAATCCTCCTAGCCCTGATTATTGCTGTACATTTTTGAC
CCTTTGCCCTTCCACCCCAAACCGGGTGTACGTTGTGTGATGAGATCTTG
AGTTTGCGATCTTGCACATGCTTAGTTTTCTCGGTCTCGTGAGGTACGAT
TTGTTGTTTACTTTGGTGTCCGTTTGTGGTCTACCCCTCTTCTCTTTTAT
ATGGGTCGGAGACCCCCAGGACACCACAGAAGAAGACTTACGTCAGGCGA
ACATGAAGCCCGGGCATGTACGACGAACCATCAAGGCACTCCACAGACTT
CGTAATGCATCGCTCATTTCTCCTGGAGACCCTCCTCCATGGAGCCCATC
CTGTTCTTCGTCTCCCGTTCCCTGTGTTCACTTTACAATGGCGAATCCGC
ATGTTGCGGACCCTTCGGCTGCTACGGTGAGTGTATGAATTAAATCGAGA
TTATTTTTTCCGCTCGACGAATTGAAACCCTGCCGCATACTTGGTTTTTC
GTCTTGTGGTGGCACGTATTGAACTGCTTGTTTTTTGTCTCGAACCTGCT
ACGTGGTTGAGAGCACGTCGGATCGATTTCCCCATCTTTGTGGATGTTAG
AAGAGGTTGATGTCCATATTCTGTGGTGCCCAACTTCAAAAAGACCAACT
CAAGCTGTGCGTTGAGCACTTTGCAGGATCTAATGACAATTGTATTCTAT
ATATATGCTCTTTAAGGCCAATGATCCACCTGGTAACCCCTCTGTGAAGG
CAGGGAATTGACGCTTCCTCAAGTAGGGATAGCTTCTCCTTCAGCTCTTG
TTTCCAATATTAATACCAATGCTTCCCGCCCTGCGGTGAGAAAATTTTCC
TTCAAGGCTGTATATTTCACTGCTGCTTGGCTTTGGCTCAAACACAAACA
TAAGCACAAACATAAATGAAACAAACCACGCAGGAGTACGAGGAGAAGCC
CCGGTTAACCGCTATGTCCAGGCAGCACAAGCTGAGCAGGTCCAACACGG
CATGGCCGTCATCATCTACACTCGCCGTCGGGGCAGCTACGCCACCACCA
ACGAAATGGCCCGCGACGACAGCGGTGGCGGCCACAGGGGCGGCTGCTTC
GCCACGGGGAACGGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig5011:9654..11619-

>mRNA_H-paniculata_contig5011.12255.1 ID=mRNA_H-paniculata_contig5011.12255.1|Name=mRNA_H-paniculata_contig5011.12255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig5011:9654..11619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATTCGATGATGTTCAGTCACTTCAAGAGGGATTCGATGATGTTCAGTC
ACTTCAAGAGGACACCACAGAAGAAGACTTACGTCAGGCGAACATGAAGC
CCGGGCATGTACGACGAACCATCAAGGCACTCCACAGACTTCGTAATGCA
TCGCTCATTTCTCCTGGAGACCCTCCTCCATGGAGCCCATCCTGTTCTTC
GTCTCCCGTTCCCTGTGTTCACTTTACAATGGCGAATCCGCATGTTGCGG
ACCCTTCGGCTGCTACGGACACCACAGAAGAAGACTTACGTCAGGCGAAC
ATGAAGCCCGGGCATGTACGACGAACCATCAAGGCACTCCACAGACTTCG
TAATGCATCGCTCATTTCTCCTGGAGACCCTCCTCCATGGAGCCCATCCT
GTTCTTCGTCTCCCGTTCCCTGTGTTCACTTTACAATGGCGAATCCGCAT
GTTGCGGACCCTTCGGCTGCTACGGAGTACGAGGAGAAGCCCCGGTTAAC
CGCTATGTCCAGGCAGCACAAGCTGAGCAGGTCCAACACGGCATGGCCGT
CATCATCTACACTCGCCGTCGGGGCAGCTACGCCACCACCAACGAAATGG
CCCGCGACGACAGCGGTGGCGGCCACAGGGGCGGCTGCTTCGCCACGGGG
AACGGCGGAGTACGAGGAGAAGCCCCGGTTAACCGCTATGTCCAGGCAGC
ACAAGCTGAGCAGGTCCAACACGGCATGGCCGTCATCATCTACACTCGCC
GTCGGGGCAGCTACGCCACCACCAACGAAATGGCCCGCGACGACAGCGGT
GGCGGCCACAGGGGCGGCTGCTTCGCCACGGGGAACGGCG
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