mRNA_H-paniculata_contig50096.12248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50096.12248.1
Unique NamemRNA_H-paniculata_contig50096.12248.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50096.12248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50096contigH-paniculata_contig50096:218..720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size223
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50096.12248.1prot_H-paniculata_contig50096.12248.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50096 223..661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.6727142-UTR-H-paniculata_contig50096:217..2221622930474.6727142-UTR-H-paniculata_contig50096:217..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50096 218..222 +
1691481308.092256-UTR-H-paniculata_contig50096:217..2221691481308.092256-UTR-H-paniculata_contig50096:217..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50096 218..222 +
1622930474.7253132-UTR-H-paniculata_contig50096:661..7201622930474.7253132-UTR-H-paniculata_contig50096:661..720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50096 662..720 +
1691481308.125543-UTR-H-paniculata_contig50096:661..7201691481308.125543-UTR-H-paniculata_contig50096:661..720Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50096 662..720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.687724-CDS-H-paniculata_contig50096:222..3451622930474.687724-CDS-H-paniculata_contig50096:222..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50096 223..345 +
1691481308.1026154-CDS-H-paniculata_contig50096:222..3451691481308.1026154-CDS-H-paniculata_contig50096:222..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50096 223..345 +
1622930474.7070796-CDS-H-paniculata_contig50096:625..6611622930474.7070796-CDS-H-paniculata_contig50096:625..661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50096 626..661 +
1691481308.1120415-CDS-H-paniculata_contig50096:625..6611691481308.1120415-CDS-H-paniculata_contig50096:625..661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50096 626..661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50096.12248.1

>prot_H-paniculata_contig50096.12248.1 ID=prot_H-paniculata_contig50096.12248.1|Name=mRNA_H-paniculata_contig50096.12248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MHHLYDVVHPPGLRRTPARRIGEQAISGTHKADDILHWMRKPVRLSRSSW
VD*
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mRNA from alignment at H-paniculata_contig50096:218..720+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50096.12248.1 ID=mRNA_H-paniculata_contig50096.12248.1|Name=mRNA_H-paniculata_contig50096.12248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=503bp|location=Sequence derived from alignment at H-paniculata_contig50096:218..720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGAATGCATCACCTTTACGACGTCGTACATCCCCCCGGGCTCAGACGA
ACTCCAGCGCGTCGGATTGGCGAACAGGCAATTTCCGGCACCCACAAGGC
AGATGACATTTTACATTGGATGAGAAAGGTAGGGATTTGGTGTTTCAAAC
CTTTCTCAAATGTACCTTCGTCGCCCATGCGCTGAGTTTGGTGGAACTGC
GGTTTCTTCGCTTTCATGGGCGTCATTGTATAATTACTCAGGCAAATGAC
GTTTATCAGGGTACCATCGCACTGACGACCAAATTTTGACGACTTCGTCG
TCTGTTTTTCATGTTTTACTTCATGTATCTGATGATATTTCTCTTGTTCG
ATTTTTCTATTTTTCCTCCGCCTCTGCTATTTTTGGCGTTGTTTTTCGAA
TATCATAGCCTGTCAGGTTATCACGGAGTTCTTGGGTGGACTGATGGAAG
ACGACGTCGAGACCCAAGAGGTTTTCATTGGTTTCACGGTGGATCAGGGT
GGC
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Coding sequence (CDS) from alignment at H-paniculata_contig50096:218..720+

>mRNA_H-paniculata_contig50096.12248.1 ID=mRNA_H-paniculata_contig50096.12248.1|Name=mRNA_H-paniculata_contig50096.12248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig50096:218..720+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCACCTTTACGACGTCGTACATCCCCCCGGGCTCAGACGAACTCC
AGCGCGTCGGATTGGCGAACAGGCAATTTCCGGCACCCACAAGGCAGATG
ACATTTTACATTGGATGAGAAAGATGCATCACCTTTACGACGTCGTACAT
CCCCCCGGGCTCAGACGAACTCCAGCGCGTCGGATTGGCGAACAGGCAAT
TTCCGGCACCCACAAGGCAGATGACATTTTACATTGGATGAGAAAGCCTG
TCAGGTTATCACGGAGTTCTTGGGTGGACTGACCTGTCAGGTTATCACGG
AGTTCTTGGGTGGACTGA
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