mRNA_H-paniculata_contig50089.12247.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50089.12247.1
Unique NamemRNA_H-paniculata_contig50089.12247.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50089.12247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50089contigH-paniculata_contig50089:11..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size613
Cds size342
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.6171663-UTR-H-paniculata_contig50089:10..2811622930474.6171663-UTR-H-paniculata_contig50089:10..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50089 11..281 +
1691481308.073508-UTR-H-paniculata_contig50089:10..2811691481308.073508-UTR-H-paniculata_contig50089:10..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50089 11..281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.6319919-CDS-H-paniculata_contig50089:281..6231622930474.6319919-CDS-H-paniculata_contig50089:281..623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50089 282..623 +
1691481308.0822508-CDS-H-paniculata_contig50089:281..6231691481308.0822508-CDS-H-paniculata_contig50089:281..623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50089 282..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50089.12247.1prot_H-paniculata_contig50089.12247.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50089 282..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50089.12247.1

>prot_H-paniculata_contig50089.12247.1 ID=prot_H-paniculata_contig50089.12247.1|Name=mRNA_H-paniculata_contig50089.12247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MDFGRKISPAESTVSAHPKLDTFLIMLLKLYSLLPLLPPIADLLLCQGGD
PTRVTAWGRQGLNEERYGGMLCNRFVLARADILDKYSAENRWALDYHEIE
YFISVKNHPQKPT*
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mRNA from alignment at H-paniculata_contig50089:11..623+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50089.12247.1 ID=mRNA_H-paniculata_contig50089.12247.1|Name=mRNA_H-paniculata_contig50089.12247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=613bp|location=Sequence derived from alignment at H-paniculata_contig50089:11..623+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGAAGGCGGTCTGGAGAGCGAAGAGGGCGTCTTGTCCCTTTCCGTACT
CTGTACACGCCAGGTAGGGCCCAGCAATGTCTGCATTGGTCCCCTTTAGC
AGCCTCTCTTTGTGCCAATGCGATGCTGCCGTGTAGGAGTTTATATTGCC
GGCGAAGTCTTGCGACGCAGTGGAGACGAAAATTGCATTAACAAGGTCAA
GAGCAGGATAGGCCGAGCCGGGCGAATGTCTTTCGTTGCTTGATGTCCCT
TCTACCAGCCTGAAAGAAATCATGGACTTTGGGAGGAAAATATCTCCTGC
CGAGAGCACTGTGAGCGCCCATCCTAAGCTGGACACGTTTCTAATCATGT
TACTAAAACTGTATTCGTTGCTGCCGTTGCTGCCGCCAATAGCCGACCTG
CTGCTGTGTCAAGGTGGGGATCCAACCCGTGTGACAGCTTGGGGGCGACA
GGGCCTCAACGAGGAACGGTACGGAGGCATGCTTTGTAATAGGTTCGTCC
TTGCAAGGGCGGATATACTTGACAAATATTCTGCAGAGAACCGTTGGGCC
TTGGACTATCACGAGATAGAGTACTTTATATCTGTCAAGAATCACCCCCA
AAAACCAACTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig50089:11..623+

>mRNA_H-paniculata_contig50089.12247.1 ID=mRNA_H-paniculata_contig50089.12247.1|Name=mRNA_H-paniculata_contig50089.12247.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig50089:11..623+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTTTGGGAGGAAAATATCTCCTGCCGAGAGCACTGTGAGCGCCCA
TCCTAAGCTGGACACGTTTCTAATCATGTTACTAAAACTGTATTCGTTGC
TGCCGTTGCTGCCGCCAATAGCCGACCTGCTGCTGTGTCAAGGTGGGGAT
CCAACCCGTGTGACAGCTTGGGGGCGACAGGGCCTCAACGAGGAACGGTA
CGGAGGCATGCTTTGTAATAGGTTCGTCCTTGCAAGGGCGGATATACTTG
ACAAATATTCTGCAGAGAACCGTTGGGCCTTGGACTATCACGAGATAGAG
TACTTTATATCTGTCAAGAATCACCCCCAAAAACCAACTTGAATGGACTT
TGGGAGGAAAATATCTCCTGCCGAGAGCACTGTGAGCGCCCATCCTAAGC
TGGACACGTTTCTAATCATGTTACTAAAACTGTATTCGTTGCTGCCGTTG
CTGCCGCCAATAGCCGACCTGCTGCTGTGTCAAGGTGGGGATCCAACCCG
TGTGACAGCTTGGGGGCGACAGGGCCTCAACGAGGAACGGTACGGAGGCA
TGCTTTGTAATAGGTTCGTCCTTGCAAGGGCGGATATACTTGACAAATAT
TCTGCAGAGAACCGTTGGGCCTTGGACTATCACGAGATAGAGTACTTTAT
ATCTGTCAAGAATCACCCCCAAAAACCAACTTGA
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