mRNA_H-paniculata_contig5007.12244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5007.12244.1
Unique NamemRNA_H-paniculata_contig5007.12244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5007.12244.1 vs. uniprot
Match: A0A812Y761_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y761_SYMMI)

HSP 1 Score: 53.5 bits (127), Expect = 6.310e-5
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:  588 QRLEQLVAVHRALLRRYGTLELENAEARKQLHLRSERMTELE 713
            QRLEQLVAVHR LLR++ +LELEN+E RK+L LR ER+  LE
Sbjct:   37 QRLEQLVAVHRQLLRKFASLELENSELRKKLLLRDERIKHLE 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5007.12244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A812Y761_SYMMI6.310e-569.05Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5007contigH-paniculata_contig5007:3076..14760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue5.3e-17
Seed eggNOG ortholog2880.D7FUD3
KEGG koko:K10396
KEGG Pathwayko04144,ko04728,map04144,map04728
Hectar predicted targeting categorysignal peptide
GOsGO:0000301,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005871,GO:0005874,GO:0005875,GO:0005881,GO:0006810,GO:0006886,GO:0006887,GO:0006891,GO:0006928,GO:0007017,GO:0007018,GO:0007163,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008360,GO:0008574,GO:0009987,GO:0010970,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022603,GO:0022604,GO:0030705,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0042623,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0046983,GO:0048193,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071963,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099609,GO:1990939
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0240@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Exons8
Model size3478
Cds size1074
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5007.12244.1prot_H-paniculata_contig5007.12244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5007 3138..12418 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.2592182-UTR-H-paniculata_contig5007:3075..31371622930474.2592182-UTR-H-paniculata_contig5007:3075..3137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 3076..3137 +
1691481307.8933158-UTR-H-paniculata_contig5007:3075..31371691481307.8933158-UTR-H-paniculata_contig5007:3075..3137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 3076..3137 +
1622930474.399921-UTR-H-paniculata_contig5007:12418..147601622930474.399921-UTR-H-paniculata_contig5007:12418..14760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 12419..14760 +
1691481308.0096326-UTR-H-paniculata_contig5007:12418..147601691481308.0096326-UTR-H-paniculata_contig5007:12418..14760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 12419..14760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.2807906-CDS-H-paniculata_contig5007:3137..33741622930474.2807906-CDS-H-paniculata_contig5007:3137..3374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 3138..3374 +
1691481307.9049428-CDS-H-paniculata_contig5007:3137..33741691481307.9049428-CDS-H-paniculata_contig5007:3137..3374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 3138..3374 +
1622930474.2985692-CDS-H-paniculata_contig5007:5659..57731622930474.2985692-CDS-H-paniculata_contig5007:5659..5773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 5660..5773 +
1691481307.9229138-CDS-H-paniculata_contig5007:5659..57731691481307.9229138-CDS-H-paniculata_contig5007:5659..5773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 5660..5773 +
1622930474.3170378-CDS-H-paniculata_contig5007:7332..74461622930474.3170378-CDS-H-paniculata_contig5007:7332..7446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 7333..7446 +
1691481307.9332182-CDS-H-paniculata_contig5007:7332..74461691481307.9332182-CDS-H-paniculata_contig5007:7332..7446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 7333..7446 +
1622930474.3314803-CDS-H-paniculata_contig5007:7716..78771622930474.3314803-CDS-H-paniculata_contig5007:7716..7877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 7717..7877 +
1691481307.9509332-CDS-H-paniculata_contig5007:7716..78771691481307.9509332-CDS-H-paniculata_contig5007:7716..7877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 7717..7877 +
1622930474.3461666-CDS-H-paniculata_contig5007:9243..93581622930474.3461666-CDS-H-paniculata_contig5007:9243..9358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 9244..9358 +
1691481307.9614677-CDS-H-paniculata_contig5007:9243..93581691481307.9614677-CDS-H-paniculata_contig5007:9243..9358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 9244..9358 +
1622930474.3582518-CDS-H-paniculata_contig5007:10661..107691622930474.3582518-CDS-H-paniculata_contig5007:10661..10769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 10662..10769 +
1691481307.9752326-CDS-H-paniculata_contig5007:10661..107691691481307.9752326-CDS-H-paniculata_contig5007:10661..10769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 10662..10769 +
1622930474.3703623-CDS-H-paniculata_contig5007:11691..118091622930474.3703623-CDS-H-paniculata_contig5007:11691..11809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 11692..11809 +
1691481307.9881-CDS-H-paniculata_contig5007:11691..118091691481307.9881-CDS-H-paniculata_contig5007:11691..11809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 11692..11809 +
1622930474.3870115-CDS-H-paniculata_contig5007:12311..124181622930474.3870115-CDS-H-paniculata_contig5007:12311..12418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 12312..12418 +
1691481307.9990308-CDS-H-paniculata_contig5007:12311..124181691481307.9990308-CDS-H-paniculata_contig5007:12311..12418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 12312..12418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5007.12244.1

>prot_H-paniculata_contig5007.12244.1 ID=prot_H-paniculata_contig5007.12244.1|Name=mRNA_H-paniculata_contig5007.12244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp
MRLVIHKCVTSIMCLVDLICSFVPFLFLFSSAGATEIVLELVRAREAAWR
SWQLSLLQENWKSSTRAEDDKNGLVTVQKELDKKQGNPESVRWDRLADDL
QKTALLRRELEASLEAKGETDATLASERREKTAIQTVSRISPHLTSFLSI
FFLSRTFFFVFHLCSFLFFFFCSFLQRLEQLVAVHRALLRRYGTLELENA
EARKQLHLRSERMTELERQKQQCQETIKVQRAKMNRQSAELLNVKEELTE
SEKLRKQMQQAPHHAPGERRAIRGGGADHQPNEIKYVRGGGGRRSHDEAQ
PWGGSGLRVETTTASSPSMSSAGTANGEPTAAQSREKARGTSRSRSFLSR
LTSPQGP*
back to top

mRNA from alignment at H-paniculata_contig5007:3076..14760+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5007.12244.1 ID=mRNA_H-paniculata_contig5007.12244.1|Name=mRNA_H-paniculata_contig5007.12244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11685bp|location=Sequence derived from alignment at H-paniculata_contig5007:3076..14760+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATATTGATCCATGAAAAGCCGGATTTTTTTATGCTTGTCGGCTGTTT
ACAGGAAGTGCGATGCGGTTGGTCATCCACAAGTGTGTGACTTCTATCAT
GTGTTTGGTTGATTTAATTTGTTCATTTGTTCCGTTTTTGTTTCTTTTTT
CCAGTGCTGGAGCGACCGAAATCGTCTTGGAGTTGGTACGGGCGAGGGAG
GCAGCGTGGAGATCGTGGCAGTTGTCTCTCCTACAGGAAAACTGGAAGTC
AAGCACAAGAGCGGAGGATGACAAAAATGGCTTGGTTACGGTACAGAAGG
TACGTGCATGGGGTAGGGAAACGGGTGTGCGGGGGAGAAGGGGGTAGGGA
TAGCGGGGTGGGGGGTTAAACGTGAAATAGTATTCACGTGAATGCGTGGC
AGAAATAAAATGCCCTTGTTTTTACCCACTGCCACCGTCTTGCAGGAATC
AACCCACGTCCCACCGCTAGTGCAACCACAGGGCTCGTCAAATACTCTGT
CGTCGTACATACCCATGATAAGCGTATGTAGTTAACCTCAAACTTCATTA
CTTGGCAGCAAAATTTTATCATGAGGCTTATGCATTGGGCTTCGCACACG
TGAGTTCTAATCTCACCATAACAATGAGGATAACTGTCCTCGGCACACGT
CGGGTGACTGTGACCCCCCTTTTGAGGTGTTTTCTAAGGTAGCCACCAGA
GGGGGAGAGCCTACAATTTTCAAGTGTTAATACTCATGAGCAAAAGTAGA
TCCCGAGGGGACTCGCGTTTTGCAAGCCATAGTTGTCTGACCGTTGACCA
CCTCCCTAAAAATAGACAGACCATTGAATGTGGTGAGTTTATCTACGGTT
ATACATGTTGATCGTTCGTACGACCGGTTGCGATAGCTTCTCCAAGGTCG
ACAGCGGACTGGGTTTGAATCGAACACAGAAGCGACTGCGAACCTGTTGG
GATTCAGGTTTGTGGTCATTTGCCAAACGGGACGCGTAGTACCGGCCATG
CAAATTACCGTTTCATGTTCTAGGCTGGTCAGGTCGAGGGAGGCCAACTG
ACGTGGAAAAAATCCTCCCATTCAACGTGAAAATATTTTTCTTCGCTTAG
TATTGGTAGATTGATACCATGAAGCATTCCACCATAGTGCGTGTACAGGT
TTAAGAGCGGGCGATTGAAGAGAAATCGGGATTTAAGAGAAGTAAAACTG
CTGTGTTGCGTCTTTTTCGTATTTTAGAGAGGTTTTGGGCTGCCCAAGCC
AACCCTCTCCGAAACGAGGTGAAAGCGGGGCGCACCGGGAAACCGGCAAA
GCGCCGCACGAAAGCAATTTCAATATTGTAAAAGTGCATGGCAGGGGTTC
CTATCTGGTCTCCCGGGGACCGAAAAGAAAGAAGCTAAGCCTGACTTGAA
TCGAGCAGGGACGTGGAATATGACCTGTGCTGTACATCACTTACTTCACA
CCGCCTGGTTATCAATGGAGCCGACTTGAGCAGACGATCACAGAATGTTC
TCGTTTGCTTACACTTTTTTTTCCTTTCTTTTGCCGAAATGGACAAAGGC
TTCTTCCAGCTCTGTGTACGGTCATGACCACGAGTGCGTTTGTTCGACAC
CAATCACAAGAGCTGGTTTTGACGGATTCAAGATAGTGTAATGTTTTGAC
ACGAACAATAGGGAATCAAGATTTTAAAAAGGTTTTTCCGGCTTTTATCA
CCACACTCTCTTGAATCTTCACAGCCCTTGAATTTGGTACTTAAAACAGC
TGTGATGTACACTACAGCGGCGCGCAATATCACAGTACTTGCTGATATTA
GTCGAGGTGTGGCTTTAGGGCAGTATTTTTCACGGACCCACGCCCAAATG
AGTAGGGTAGGTCGTGAACTGAGCATGACTGTAGGTCTAGTCAGAAGTCT
TTCAGTGGGTGCAACCCCCACACTGCCTACTTGGTTCGGCCGAACCGGGG
TGGCGCCTACCCCTCAGAGGAATGAATAACTCTCTTCTGTCAAAGGAAAT
GTAGAAATACTTCGATAGAAATACATAAGTATGAAAGCATTGGATAAAGG
TTTTTGCCTTAACCTTCAGGGGGTTGAAAAAAACACAAAAAAACGGTATT
TTGCGTCTCAGGGTACCGGCGATAGTATTTCAGGCTGCCCTAAAAGACGA
AGCTACAGATTGGAACGGGATGGGATAGGATGATATGCATGCATCTGTGG
GCGCCGTGCGTTTCCTGGTTCGGAATTTTTTTCGGGGAGCGAGAGGGGGG
GCGGTACGGGGGGGAGTACGAATGAACTCACCTTGTCCCATTCTGTCATG
CTTCGTGGTGGCCTTGTTGGCTGATCTGATTTTACCTGTCGGACAGAAAA
AGGTGTGGGACACCCCTTTTGATTGAACAAAGAAACGATTAATTCGTTAT
TAAAAACATGAGGGTCTCTCTGTTCAAAGCAGCATACCCATGTGTCCTTA
CAAGAAATAGAATACGTTGTTATTTATAGGGATAGTTGAATGTTTGTAGG
AACAAAGAACATGGTTTCTTTAACCCTTCATATGACTTCATTCTGTTGGA
CGTACGTATGCCTAATCCTCTCGTGGTTCCACAGGAATTGGACAAAAAGC
AAGGGAACCCGGAAAGCGTTCGATGGGACAGGCTTGCGGACGACCTCCAG
AAGACGGCGCTGCTGCGTCGGGAACTGGAAGCGTCTCTCGAAGCCAAGGC
AAGCGTCATGTTACAATCTCAATTGGGCACTTGCAGTTAAAACTGAAGAG
TATCGGGGGCGATTTTTTCAGTTTTTGAATGTTTACTTTTCATCAGTGAT
GCCCTATTGTTATTCTAATGTGTATTGGTGTGAGTGATGTATGATTCTAG
TATCAGAGCATAATCATGACTACGTCCGTGCAGTTCGCGCTTGTCCTCGA
CGCATGGACTTGCTGCGCTCAAAGTGGCCCGCTATACTTCTCGCAAGAAG
ATTCGGTTTCTAGAGGTTAATTGAGTACAGCATGAAAAATAGAGTTCGCG
AATATTCGAAGAATAAGTATCGAATATGCCAAAGAACCATCTTGGGCCCG
AGGTTAGGAAATATACCGGGATTCCAATGGGCCATTGTGCTAGTTCTTGG
TAGTTTTACACTCTTCGGTTTCATGAGTATATTGGGTGAAATTCCTTACC
ATCAATGGAATACCTACCGTTGGTGACGTCTAGGGGCATGACCAAGGCGT
TGGACCAGTTTTGTTACCCCCGCATGGTGAAGAAGTCACTATCGACACAG
TACTCGAGGAGTGGGAGGAAGGGTTTATCGAACAAACAGTGAGCCTTTAC
TCTGCGGTCTTGTCTGCCTGTACTTGAGCAAGATACCGGAATACGTGGAG
CTACTTGCGATACTCCACGAAACAAGCAGTTGAAGTGCATCAATGTCGGT
CCCCCTCTCACCTTGTTATAGTCATGAACCATCGCAAGTGGCGCCTGCGA
TGGCACCTGTTGTTGGTCTCTTTTACCGTGTACACCGATTGTCAAGAGCA
CGTTTGGGTTGGGATCGGTCTTGATTATTCAGATTAGAGAAAGAGCATTT
GTATTTTTGCGAAAAAAATTGGAGGAAGAAATATTTTGGGTGGTGGTTCA
TATCTTGTCTTTTTCCCGCTACAGTGCGCTAAACCACCATTAAATCGACA
AATTGGATGTTACGATATTCAGGTCTCGGTTATTTTATTCTCAAAGGAGT
TTGCTCGAGGGGTACTGCTCAAATCGTGGCCCAGTTAAATTTCCATATAT
CGAGAATTATGAAGTCACATTGAAGGATCGTCACACCAAGTATGTATTTC
TTAAGGATTCGATTAAGCGATCATGGCCTTGAACAGCTGTTGTAGTGATG
AAGAAGACCGTGGTTTATATTGCTATGCCTCTTGTTCGTCTCGTTTCGTC
CCTTGCCCATTGCTTGTTGCCTTGGTTTGTGTTTTCCGCCATAGTGAGTT
TGGATTGTTTTTCGTTGCCTTGATGCTCTCTCTCTCTCTCTCTCTCTCCG
GCGTTATTTTTCGCATGGTTCATTTGTTATTGTGTCATTTTCTGTCCTCC
TATGTAGTTTCCCCCCTCCCTCTGTCTTTGTCCATTTCTCTGCTTTCTTC
ATAAGGATCCAAGTTGGCCATGTTCATATTCCAGTCTAACCTCCAGTGGT
TTTTGCCAGCTTGGATCCTTTCCTTGACTATGATATCCTTTTCTGTGCTG
TGTTTGTGCTGCTGTGTGCGTACATGCTCATGTATATATTTCGTACATTT
TGGACAGGGAGAAACGGATGCCACGTTGGCGAGCGAGCGACGGGAGAAAA
CGGCTATTCAAACGGTCAGTCGGATTTCTCCTCATTTAACATCGTTTCTG
TCCATTTTTTTTTTATCAAGAGCTGTACGACAGAGAGTGTCTTTTTTTCT
TTTTTCTCTCTTTATATATATATATATATTTTATTTGTCATATTTGTGCT
TGATGTTCCCGTTTTTTTTTCTTCCTTTGCCTTCGTTCTCATGCGTTCGT
CGTCGTGCATTGTATTTGGATGATGTAATCATATTATTCGGTGAACTCAA
TGTGATGCAATCCGATGCGATGGACAAAAACAGCAATAATTGTAACCCTT
TGCCCTTATTTTTCCGTCGCCCATTTTTTTTTTTTTTTGAGACGTTTTTC
TTCGTGTTTCATCTTTGTTCGTTCTTGTTCTTCTTCTTTTGTTCTTTTTT
GCAGCGCCTGGAGCAACTTGTGGCGGTGCACCGCGCACTGCTCCGGCGCT
ACGGTACCCTGGAACTGGAGAACGCCGAAGCAAGAAAGCAGCTTCACCTA
AGGTACATTTTTTTTTTTTTTAATTAGTGGGTATGAGAACATGATACTCC
CGGAAGATACTGGCTCTCGAGGGGGCGCACCGCCTGCTCTATGCGGGTCG
GTTTTAGTTCTTAGGATGTAGTACGGAGCAAGCACTTGGGTTTTGTTCTG
TCGGAGATGGAGTGACCATGGAGGGTCGGACACAGATGAAAAGCTATTCC
GGGAGGGACAAAAATGCGATTGGTCGTTGTGTCGGGGGTCGGAGTTCTTG
AACCCCAGGAACGTGAGGAACGTGCTCTCGACAGGTATGCAGGTAAGTCA
CAGCTATTACGCCAATGGCGTATTTGATGAGTGTGTAGTCCCTCTGCAAG
TGTTTAGTGTGTCATGTGACACTTTGGATAAACACTTGAATAGATGAGGG
AAAATATAATAAGAGATATATATGATGATTTTCTCAACTGTATTACTTTG
AAATGATTATTCATCATTTGTGCCCAATCGCACGAACACGTGGTCAGAAG
ACATGAGCTCCTACTATAAGACAATATCGTACTTGTAGGGAAAAACGTAT
TTCTCGAGATTGCTCAATTCTGAAATTGTGGTTAGACATGAAACAAAAAG
GAAAACAATGTGAAAATAACGTATAGTCAGGATGGACCCTTCCTCTCTCT
GTTCCTCCCTGTGTTCCGTCCGGGATTGCTGAATGCGTGCATGCTTACTT
GACCCTCTCTAACCATCTACTGCCCTCCTCCCAGAACTGCAGAGTTTACA
ATCTTCCACACGTCGGACGGAATACAGGTGTACGAGAGTCAGTGTTTCAA
TAAGCAAGAGTTCTGGTTGAGTTCTGTGAACTACTCAGCACGAGGGCAGC
GGTTCTACCGTCCTTTTGGTCTGTCACGAACGCTGCTTTTGTTTGTACAC
ACGAAAAATGGAGAGCGACGAGAACGTTCTTTGTGCAACGTATGTGAGAT
GTCCAAACTTGGTAGTGCTGAATACTTCTGTGTCCGAGCTGTGGCCAGTT
TTTTACCCGGTATACGTAATATGGTCACGTTGAAATAAGTTTTCTCAGTA
GTGAGGCGTGAGTATGGCGCTCGAACAGGCAGACAAAGTTACGGCGGCTT
AAGGCGCACTACCGTAACACCCGGTGATCTTGCACCCCCTTGATGTTATT
TTCCAAACTCGATTTTTATCGAGAAATATGAGCCCGCCAGTATTGTGCTG
AAGCAGCATGTCTATCGAAAGAATCTCGACGACGTATTTCCAAGGATACC
GCTATCGATCTAATAATACTATTTTGTCCTTGCCTTTTGTGCAACTAAAA
GGTTGAATGTTATGCCTAAATCCACGCTTCACCTGGGTCATTATCTACTA
TTGCCCTTGTTTTTCCAGGAGTGAGCGCATGACGGAGCTGGAGCGGCAGA
AGCAACAGTGCCAGGAGACGATCAAGGTTCAGAGGGCCAAGATGAACAGA
CAGTCGGCGGAGCTTTTGAATGTCAAGGAGGAGGTGCGTTCGTCCTTTCA
TCTCGTGGTGATGGTGGTGTGACGGGGTGCCCTCTACGATTGTGGACGGT
CAAGGAAAAATTGAATTTACGTGAGAAGTTACGTAGATGTATTGTTAAAA
AAACTACATCAAACTGTTTTTTCATTTAGAAACAAAGGAATGAAGATGGA
AGGTATGACCGAACATTTTGTCGTTTTATTCTTGGGGGGGGGGGGGGTTG
TAGAAAATACGCAAAAATCAGCAAAATACCTGCACGTAAGGGTTGGGTTT
GATCGATCAGGGAGGGGGCGTATATCTGTTTTCGATGTTCCACCAGATAT
GTAGTGAAGATGTTAATACTGGGAAATAACAGTACAACTCTAATTGACTT
ATTTTTTCTTTGCCTTAAGGGTTGAATACGAAAGCTCCTAGTAAGAAAAT
CGACAGGCGTAGTAAGCTACCGAAGTTAAGTAACGCAACCACGGTGGTCC
GGGTATGTACTAGCCTCTGTTGGAAGAGTGTCATGATCCAAGAAGAATGG
ACTGACCCATATCGTAGGGTGACTTTGGGGTATTTGTCAATCTGTTGTAG
ACTTGGATTTCTTCCCTGCGTCCATGACTCTCGACCCCATGCCACCCCAA
CGGCAGGGCATTTGCTGTAGTGGGGATGTTTGTTGATGTATTGTAGACTT
GCTGTTTTTCCAAGTTAAGGAGCCCCCCGCTTCCTCCTCTCCAGCCTCAT
ACACGCCGTCCTGATCGCAAGAATTTTTTCGCCTTTCGCCTTTCGGTCTA
GATGACGTGTGTTGGGTGACCGACGGTGCGTAAAATACATTGTGCAGAGA
TCGGAATGTACGTATGTATGTCGATGTCGTCACTATGCGAAAGATTTTCA
AACCATTTGAAAACGTTAGATTTGGAACCTAGAAGTACAAAACGTGGAAA
ATCAGAAGAAAAAATGTTTTTTATTCGTTTTTTCGTACTTTTTTTTAGTT
CATGCCCCAAAAGAGGCAATTTAAATACGCCACTTTGATTTGTGATCATT
ACAAAAATGATGTTAATGTTGGTTGTGGTGGTGATAACGGTGTTTCGAGT
TAGGTACGCTCGCTATTGGCTCGTCTAGAGGGTTCCAAGGGGATCTGAGC
AACTGGCCCACGGGTCTTGTGCTGTACCGCTCATGATATTGTCCTCCCCG
TGCCCGCCTGAAAAGCATAACCTTCCCAAAACAACCAACATAAACTAAAA
TGAAGAGTATTTTTCTTTTGTAGTACTGGGGTCGGTTTTGTTCATGTTCT
TGCCGTGTTGCGGCCGTGTGTCCTATTTGGAACCAGTTAACGGAGAGCGA
GAAGCTGCGGAAACAGATGCAGCAGGCACCGCATCACGCTCCCGGAGAGA
GGCGGGCTATTCGAGGGGGTGGCGCCGATCATCAACCCAATGAGGTTTGT
TGCGTTTGTTATTAGCTAAAGTCTATACGGGCACATTTCACTGGTCCCAG
TATTGGCCTCTGTAGTTTTTTTCGCGTCGTTGATTTTTGGTTGTGTGTTT
TCACTCAAGACTCAACTCTGACAGCAAGATCTGCTTCGTATAACAAACTT
TTTTTTTGGACAATTCGTCGTTATCTTCGACCTGTGTACTTGGATGCTCA
AAATGATGTCTCAAGAATCGGTCGGGGAAGACGAATGGTAATACCGGTAT
ATTACCGATATTTCTTTGATGTCGGTCACGTATCTTTGCGAGTGAAGCGA
CCTATTCGTGCAAAGTATCAGGCGAGCCCTTCAGAGAGAGTGAAACCCGC
CACCACCGGCTGGTGACGGGGTGTCGCCGGAGACATCGCCAAAGGCAACA
AAAATGTGTTGGATAGTCACCAAAGCATCTAGGCATTACCTGGATAATGG
CTATAACATGCGGGGCAAAAAGTCTGACATATATCTTTGATGGACGATCG
ATATGCTATTATATGGTATTGCCCGACATGATAATATATCGTGAAAGAAT
CGGCGCCGATACATATTTCCACAAGAAGTGTTTTATCTTATGCTTTTTTG
GGTGTGTTTTTTTTCACAGGGAAAGACTCTTGTCAGCAATACACTACTTG
ACTATTTTTTTTTTATTGCCTTGAAACAACGGTTTTGAAACGTAGTTGTA
CAGCTGGTTGGAAACGCCAAACGAAGCCGCAAGTAAGCCAAGGATTTAAA
AATCTGCGTTGTACTTCATTGCAGTGCTTTGCCGTCCTGTGGCATCGTTT
CGTTTTCATTGTCGTTGTCGTTGTCCTTTGATCGCCTGTGCCTTTCCGAC
CTTCTATTTTGTTCTGTTACTGCATGCTGTGGCTCTTTTCTGTCTGGTTC
GTTGTTTGTTGCACAGATCAAGTATGTTCGGGGTGGAGGTGGACGACGTT
CACACGACGAGGCGCAACCATGGGGCGGCAGCGGTCTGAGGGTGGAAACC
ACGACTGCGTCGTCCCCTTCCATGAGCAGCGCAGGTCAGTCGTCCTCTGT
AGCAAGCAAGTACGTCTTCGTGTGTACACTTCGATATTCTTCCAGCGCCA
CGGTGTTTGCATATTCTCGGCAGGAAAATACCGCATATTTATCGTAAGGG
AAGGAAATGAAGTGCTGCACCCTGTTCATGTCTGAGCCGTGAAGCGTAGA
CATGCATGACTTGAGAGCTAATTGGTGACTCTGACTTATCAAACGTTGAC
TACAGTGATGTGAAATTTACTCACATATACACTTGTGTGTGTACATATAT
AATATGATATATATGCACTTATTTCGGTCTCCTCGAGAAAGTACAAGGTG
AAATTTCCTCCTCCTCTTTTTTTTTTTCTTTTTTTCTCGGAATAACTAGA
AAAAAGCGATGTTTAATTTGATATAATATTCTTATTTTCTTCGTCTTGAA
ATACTGGAAAATAGATGTTAGTGAATATATATATAAGAACTGAAATTGGC
TTATTTTAATGATCGTTTTTTTATACCGAATGTCAGGGACTGCGAACGGG
GAACCTACCGCCGCACAATCTCGCGAAAAGGCTCGAGGCACGAGTAGGTC
GAGGAGCTTCCTTTCCAGACTCACGTCACCCCAAGGCCCCTAGTAAATTT
ATGTCCGTGACCTTGTGGTACTTGCGTCGTTTGTTTGTTTTCGAGTCCCT
CGTGCTCCTTGCCAAAAAACTTTCTTGTGTTGTATGCGTGGCTTCCCCTC
TGGTTCTTTTGCTGAAGTCTTGCCCATGGGTTGGATTCAGTCATTGATTC
GATGGTTTACTTCTTTTTTTGTTGGTCAGTCGGTCGGTCTGTCGGTCCGT
TGTTTCTTTTTGTTTTGTGTTGTGTTGTGTTCTTTTACCAGATATTATTG
TTCTCTGCTACTAATGAAACTGGAGGGAGGCGGGCACGGGGGATTTGTGG
TAGTGTTGAAGACGACGAAAGCATGGAGTCGGCGGAAGCCTATCTGATCA
ATTGTCATCGACGTAAGATGTACAGTAGGGTGCCTGCCCGTGACTGAGCC
CGCCAGCAATTTTGTGGGTTCATTCAAAGTTGAGACACCTGTCCTTTCGC
CGCGATGACTACATAGATATTAAGATTTACTACAGGAGGTTCCAAGTGCA
GCCCGCTCGTTCCCCTCTAAAGCCATCGAAAGTCGCTGGTTCGGGAGGGA
GTTCGTAACTATATACCGGGGGTTACGACTGGTATCCCACTGATCGCAAT
TATTTGCTTGGTTGCCGTCGAGTACAGCAAGCCAGCTGAAACATCCGTGC
GCCCTTGATGGTTGGGCATTGTTATCGCTGCTGTGAACTACGGGCTAACA
ACGCTCTACGGGGGTGGGGGATTTAGGGCAGGATTCGAGATATACGGAAT
ATTGGTCTAAATATCAGCACAACCGTGGTGGCGGGAATGTGAGATAAGCC
GACGTCGATTTGTATTATGCGCGGGTGATCCATCATGTAGATGCCAAGTG
AGGGATTGACTTCATGATTCTGTCGTTCTTGGCCGAAGACTATACTTGTC
TTGAGGACCGGCCATGTGTAGTAGTATCATTGGCTTCTTGTCTGTGCTCT
CTGTCTCTCTCTTTCTCTCTCTTTCTCTTTCTGTCTCTCTCTGTCTATTA
AACCCTAAGCCTACGTTAAATTCTGGAAAGGTGAATTGGTTTTCCGTCAT
GAGAGATTTCTGTGTTTCATAACTTTCCAGTGATGTGCGAAGCACGCAGT
GTAGAATCTGAGTGTTGTTGGATCTTTGGTACGGCCATGGCAGCTTCATC
TCCCACCTATACCGGCTGTAATTCATTAAGCGGAGATGAAGGTTTGTGAT
GTTCAACGGCAATTTGATGTAGTACATGCTCGCTTGGGTTATACCTATAG
CAAGAGGCCTCAGCGATTGTGTAGTAATTACGGTAGCTGAAACACAGACG
GCAGGTAGAGCATGTGGTAGGTGGCGCAGACCTGAAGTGCTGCTGTGCAT
TTATATAAGCTGTGCATTCATGCACAGTAGTAGGCATCTTTCGTGGATTT
GAGACACGGTGCAGATTAATATTAGTATCACCTAATTTGGTGAGTGACTC
GTCTAGCTTGACCACCTCGAGAAACAACGAGGCCTTTGACCAAGATACCG
TTGCTTATGGGCGCATCTGAAACTTGATTTTCCCCGATGCACCTAAAATC
AAGTACCCACCATAACTTTGTACCAAAAATCGCGTTGCGGAGGAGAATTT
AGGCCCAACGCCTTATTACCGTGCGTAATTCTTGCTGCAGCTCCAATGGG
AGATGGGGCTTCGTGAAAAACTTTTCGATCTCATTCTGATTATATCTCGC
ATGGCTGCAGAGGGTGCGTGGCCTCACTATGGTAAAAATGAAGGTTTCTC
GACTCGTGATAGAAGCGGCCCCACTACCCAAAAATTACGCCACCTGTATT
ACTGACAAAGACGATGATATTTCCCGATGAAACATTCGAGTGAAGATGGT
GTCACGGGGAGAGTGTGATGATTGGTTCGTGTGTGTGTCCTTCCCGGTGT
TCTGTGTAGATAGTAGATGTGGACCAAATATCTGCCTGCAGCAGGCAGGG
GAAAAGTAAGGTCCGTGTATGATGGAAGTGATCTCTTCTCTTGATCCAGT
AATACGCCAACATGTGGCGAGAGGTGTACGTTGGTAAGTCTGTCTACCTG
TGCTGGCCGATTTTTTCCCTCGGGTGTGGAAGCTGGTCACGGCAAGCCGT
AGTCTGCGCGTGGGCGGGGAAAATGATCCCATTTCTTGGACTGAGAAAAG
GGGCAAGTGTTAATATACACTAATGGTGAATACGACGTCAACTAACAGAG
TGTTCATGAGATGGAGAATCTATCTTCAAGAAGAGAACGGGAGATATTTT
GAAACCGTCCTGTAGTCCACCGATCAAAATTTAAAGTCATCAATTTTGGA
GTGAAAGCTTGCAAAATGTCCAAACTTTGCATGTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5007:3076..14760+

>mRNA_H-paniculata_contig5007.12244.1 ID=mRNA_H-paniculata_contig5007.12244.1|Name=mRNA_H-paniculata_contig5007.12244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig5007:3076..14760+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTTGGTCATCCACAAGTGTGTGACTTCTATCATGTGTTTGGTTGA
TTTAATTTGTTCATTTGTTCCGTTTTTGTTTCTTTTTTCCAGTGCTGGAG
CGACCGAAATCGTCTTGGAGTTGGTACGGGCGAGGGAGGCAGCGTGGAGA
TCGTGGCAGTTGTCTCTCCTACAGGAAAACTGGAAGTCAAGCACAAGAGC
GGAGGATGACAAAAATGGCTTGGTTACGGTACAGAAGATGCGGTTGGTCA
TCCACAAGTGTGTGACTTCTATCATGTGTTTGGTTGATTTAATTTGTTCA
TTTGTTCCGTTTTTGTTTCTTTTTTCCAGTGCTGGAGCGACCGAAATCGT
CTTGGAGTTGGTACGGGCGAGGGAGGCAGCGTGGAGATCGTGGCAGTTGT
CTCTCCTACAGGAAAACTGGAAGTCAAGCACAAGAGCGGAGGATGACAAA
AATGGCTTGGTTACGGTACAGAAGGAATTGGACAAAAAGCAAGGGAACCC
GGAAAGCGTTCGATGGGACAGGCTTGCGGACGACCTCCAGAAGACGGCGC
TGCTGCGTCGGGAACTGGAAGCGTCTCTCGAAGCCAAGGAATTGGACAAA
AAGCAAGGGAACCCGGAAAGCGTTCGATGGGACAGGCTTGCGGACGACCT
CCAGAAGACGGCGCTGCTGCGTCGGGAACTGGAAGCGTCTCTCGAAGCCA
AGGGAGAAACGGATGCCACGTTGGCGAGCGAGCGACGGGAGAAAACGGCT
ATTCAAACGGTCAGTCGGATTTCTCCTCATTTAACATCGTTTCTGTCCAT
TTTTTTTTTATCAAGAGGAGAAACGGATGCCACGTTGGCGAGCGAGCGAC
GGGAGAAAACGGCTATTCAAACGGTCAGTCGGATTTCTCCTCATTTAACA
TCGTTTCTGTCCATTTTTTTTTTATCAAGAACGTTTTTCTTCGTGTTTCA
TCTTTGTTCGTTCTTGTTCTTCTTCTTTTGTTCTTTTTTGCAGCGCCTGG
AGCAACTTGTGGCGGTGCACCGCGCACTGCTCCGGCGCTACGGTACCCTG
GAACTGGAGAACGCCGAAGCAAGAAAGCAGCTTCACCTAAGACGTTTTTC
TTCGTGTTTCATCTTTGTTCGTTCTTGTTCTTCTTCTTTTGTTCTTTTTT
GCAGCGCCTGGAGCAACTTGTGGCGGTGCACCGCGCACTGCTCCGGCGCT
ACGGTACCCTGGAACTGGAGAACGCCGAAGCAAGAAAGCAGCTTCACCTA
AGGAGTGAGCGCATGACGGAGCTGGAGCGGCAGAAGCAACAGTGCCAGGA
GACGATCAAGGTTCAGAGGGCCAAGATGAACAGACAGTCGGCGGAGCTTT
TGAATGTCAAGGAGGAGGAGTGAGCGCATGACGGAGCTGGAGCGGCAGAA
GCAACAGTGCCAGGAGACGATCAAGGTTCAGAGGGCCAAGATGAACAGAC
AGTCGGCGGAGCTTTTGAATGTCAAGGAGGAGTTAACGGAGAGCGAGAAG
CTGCGGAAACAGATGCAGCAGGCACCGCATCACGCTCCCGGAGAGAGGCG
GGCTATTCGAGGGGGTGGCGCCGATCATCAACCCAATGAGTTAACGGAGA
GCGAGAAGCTGCGGAAACAGATGCAGCAGGCACCGCATCACGCTCCCGGA
GAGAGGCGGGCTATTCGAGGGGGTGGCGCCGATCATCAACCCAATGAGAT
CAAGTATGTTCGGGGTGGAGGTGGACGACGTTCACACGACGAGGCGCAAC
CATGGGGCGGCAGCGGTCTGAGGGTGGAAACCACGACTGCGTCGTCCCCT
TCCATGAGCAGCGCAGATCAAGTATGTTCGGGGTGGAGGTGGACGACGTT
CACACGACGAGGCGCAACCATGGGGCGGCAGCGGTCTGAGGGTGGAAACC
ACGACTGCGTCGTCCCCTTCCATGAGCAGCGCAGGGACTGCGAACGGGGA
ACCTACCGCCGCACAATCTCGCGAAAAGGCTCGAGGCACGAGTAGGTCGA
GGAGCTTCCTTTCCAGACTCACGTCACCCCAAGGCCCCTAGGGACTGCGA
ACGGGGAACCTACCGCCGCACAATCTCGCGAAAAGGCTCGAGGCACGAGT
AGGTCGAGGAGCTTCCTTTCCAGACTCACGTCACCCCAAGGCCCCTAG
back to top