mRNA_H-paniculata_contig5007.12243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5007.12243.1
Unique NamemRNA_H-paniculata_contig5007.12243.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5007.12243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5007contigH-paniculata_contig5007:2047..2684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size638
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5007.12243.1prot_H-paniculata_contig5007.12243.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5007 2235..2621 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.1755943-UTR-H-paniculata_contig5007:2046..22341622930474.1755943-UTR-H-paniculata_contig5007:2046..2234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 2047..2234 +
1691481307.8590763-UTR-H-paniculata_contig5007:2046..22341691481307.8590763-UTR-H-paniculata_contig5007:2046..2234Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 2047..2234 +
1622930474.2116292-UTR-H-paniculata_contig5007:2621..26841622930474.2116292-UTR-H-paniculata_contig5007:2621..2684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 2622..2684 +
1691481307.882276-UTR-H-paniculata_contig5007:2621..26841691481307.882276-UTR-H-paniculata_contig5007:2621..2684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5007 2622..2684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.194803-CDS-H-paniculata_contig5007:2234..26211622930474.194803-CDS-H-paniculata_contig5007:2234..2621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 2235..2621 +
1691481307.870748-CDS-H-paniculata_contig5007:2234..26211691481307.870748-CDS-H-paniculata_contig5007:2234..2621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5007 2235..2621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5007.12243.1

>prot_H-paniculata_contig5007.12243.1 ID=prot_H-paniculata_contig5007.12243.1|Name=mRNA_H-paniculata_contig5007.12243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MITVKTRVQTIRLPAVVAAVMVAPIVLHTVLPILVSVPVARNDDDIVVIV
AVARTVTSTTTTLTISSVVERLVVFVMMSKLMVVAMVMMMSPAAAAVTTA
AQKVKPSAVGLLRLRLRLPSRLLYMLSC*
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mRNA from alignment at H-paniculata_contig5007:2047..2684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5007.12243.1 ID=mRNA_H-paniculata_contig5007.12243.1|Name=mRNA_H-paniculata_contig5007.12243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=638bp|location=Sequence derived from alignment at H-paniculata_contig5007:2047..2684+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGAGTGATTTTGGGATCATATTCGGGACGGTTCCGGGAAACTTGCTCC
TGTGTGTAGTCTCCGTCTCGTTAGGTTAATGGTTTTTACCCGGTTACGTT
AAGCGCATCTGTGGAGCGTTGGCCACTGGGATTTGTTCTTGCTTTAGTTG
CGAAAGTCAGTGCAAAAATCAAGGCAACAGCAGCGACAATGATTACGGTA
AAGACGAGAGTGCAAACTATCCGTCTTCCTGCTGTTGTCGCTGCGGTGAT
GGTGGCACCGATCGTTCTCCACACCGTCCTGCCGATACTAGTATCGGTAC
CGGTTGCGAGGAACGATGACGACATCGTAGTGATTGTAGCAGTAGCACGA
ACGGTTACGTCGACGACAACAACGCTGACGATTTCATCAGTAGTGGAAAG
GTTGGTGGTCTTCGTGATGATGTCAAAGTTAATGGTTGTGGCCATGGTGA
TGATGATGTCGCCCGCCGCTGCGGCCGTTACTACGGCGGCTCAAAAAGTG
AAACCATCGGCCGTGGGTTTGCTGCGGTTGCGGTTGCGGTTGCCGTCGCG
ATTGCTGTACATGTTGTCCTGCTGACGTGGAGTTTTTCCGCCGTGACTCC
GAATACGAGAAGGGCATCGCGTGGTTTGTTCATGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5007:2047..2684+

>mRNA_H-paniculata_contig5007.12243.1 ID=mRNA_H-paniculata_contig5007.12243.1|Name=mRNA_H-paniculata_contig5007.12243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig5007:2047..2684+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTACGGTAAAGACGAGAGTGCAAACTATCCGTCTTCCTGCTGTTGT
CGCTGCGGTGATGGTGGCACCGATCGTTCTCCACACCGTCCTGCCGATAC
TAGTATCGGTACCGGTTGCGAGGAACGATGACGACATCGTAGTGATTGTA
GCAGTAGCACGAACGGTTACGTCGACGACAACAACGCTGACGATTTCATC
AGTAGTGGAAAGGTTGGTGGTCTTCGTGATGATGTCAAAGTTAATGGTTG
TGGCCATGGTGATGATGATGTCGCCCGCCGCTGCGGCCGTTACTACGGCG
GCTCAAAAAGTGAAACCATCGGCCGTGGGTTTGCTGCGGTTGCGGTTGCG
GTTGCCGTCGCGATTGCTGTACATGTTGTCCTGCTGAATGATTACGGTAA
AGACGAGAGTGCAAACTATCCGTCTTCCTGCTGTTGTCGCTGCGGTGATG
GTGGCACCGATCGTTCTCCACACCGTCCTGCCGATACTAGTATCGGTACC
GGTTGCGAGGAACGATGACGACATCGTAGTGATTGTAGCAGTAGCACGAA
CGGTTACGTCGACGACAACAACGCTGACGATTTCATCAGTAGTGGAAAGG
TTGGTGGTCTTCGTGATGATGTCAAAGTTAATGGTTGTGGCCATGGTGAT
GATGATGTCGCCCGCCGCTGCGGCCGTTACTACGGCGGCTCAAAAAGTGA
AACCATCGGCCGTGGGTTTGCTGCGGTTGCGGTTGCGGTTGCCGTCGCGA
TTGCTGTACATGTTGTCCTGCTGA
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