prot_H-paniculata_contig50052.12241.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig50052.12241.1
Unique Name	prot_H-paniculata_contig50052.12241.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	117

Homology

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.020e-67
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKSAKAPKKAG+KK+++KR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.440e-61
Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKSAKAPKKAG+K K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 191 bits (484), Expect = 7.750e-61
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGE-KKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAK PSKK+AKAPKKA + KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 191 bits (484), Expect = 8.010e-61
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGEKKKSSK--RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKSAKAPKK GEK K+ K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 187 bits (474), Expect = 2.280e-59
Identity = 98/116 (84.48%), Postives = 111/116 (95.69%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+AKAPKKAG K+  +KR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.200e-59
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGE-KKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAK PSKK+AKAPKKA + KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 186 bits (471), Expect = 6.980e-59
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSK+SAKAPKKA    KS KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.520e-57
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKK+A APKKAG K+ S KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121

[Close]

BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (454), Expect = 3.090e-56
Identity = 98/120 (81.67%), Postives = 112/120 (93.33%), Query Frame = 0

Query:    1 MAKTPSKKS-AKAPKKAG---EKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSK++ AKA KKA    +KK+S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120

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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: W7TEP7_9STRA (Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.060e-56
Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 0

Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
            MAKTPSKKSAKAPKKAG+  K   R+ESY SYIYKVLKQVHPDTGISKRG+SI+NSFI D+F+R+A E+GKL RY KK+TLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI8_ECTSI	2.020e-67	95.69	Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
A0A6U0X3U9_9STRA	1.440e-61	87.07	Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R...	[more]
A0A836CJ22_9STRA	7.750e-61	88.03	Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A485K2U0_9STRA	8.010e-61	86.44	Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep...	[more]
H2B_OLILU	2.280e-59	84.48	Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830...	[more]
A0A836CJT3_9STRA	5.200e-59	88.03	Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
B7FWR8_PHATC	6.980e-59	85.34	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A6U6DWX5_9STRA	5.520e-57	85.34	Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ...	[more]
B8BX20_THAPS	3.090e-56	81.67	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
W7TEP7_9STRA	8.060e-56	81.03	Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 R...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 29..47 score: 84.56 coord: 100..113 score: 92.65 coord: 87..100 score: 90.61 coord: 70..87 score: 56.83 coord: 48..68 score: 67.66
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 19..115 e-value: 3.3E-69 score: 245.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 4..116
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 84..106
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..92 e-value: 4.4E-19 score: 69.2
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 1..116 e-value: 4.4E-56 score: 190.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 4..116
None	No IPR available	PANTHER	PTHR23428:SF196	HISTONE H2B TYPE 1-N	coord: 4..116

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig50052	contig	H-paniculata_contig50052:972..1322 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig50052.12241.1	mRNA_H-paniculata_contig50052.12241.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig50052 972..1322 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig50052.12241.1 ID=prot_H-paniculata_contig50052.12241.1|Name=mRNA_H-paniculata_contig50052.12241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold