mRNA_H-paniculata_contig50052.12241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50052.12241.1
Unique NamemRNA_H-paniculata_contig50052.12241.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.020e-67
Identity = 111/116 (95.69%), Postives = 115/116 (99.14%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAG+KK+++KR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.440e-61
Identity = 101/116 (87.07%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAG+K K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   15 MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 191 bits (484), Expect = 7.750e-61
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGE-KKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA + KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 191 bits (484), Expect = 8.010e-61
Identity = 102/118 (86.44%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGEKKKSSK--RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKK GEK K+ K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 187 bits (474), Expect = 2.280e-59
Identity = 98/116 (84.48%), Postives = 111/116 (95.69%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+AKAPKKAG K+  +KR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.200e-59
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGE-KKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAK PSKK+AKAPKKA + KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  134 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 186 bits (471), Expect = 6.980e-59
Identity = 99/116 (85.34%), Postives = 107/116 (92.24%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK+SAKAPKKA    KS KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.520e-57
Identity = 99/116 (85.34%), Postives = 109/116 (93.97%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKK+A APKKAG K+ S KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAA-APKKAGGKR-SRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
[Close]
BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (454), Expect = 3.090e-56
Identity = 98/120 (81.67%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:    1 MAKTPSKKS-AKAPKKAG---EKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSK++ AKA KKA    +KK+S KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
[Close]
BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Match: W7TEP7_9STRA (Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEP7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.060e-56
Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:    1 MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 348
            MAKTPSKKSAKAPKKAG+  K   R+ESY SYIYKVLKQVHPDTGISKRG+SI+NSFI D+F+R+A E+GKL RY KK+TLSSRE+QTAVRL LPGELAKHAVSEGTKAVTK+TSS
Sbjct:    1 MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRGVSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAKHAVSEGTKAVTKYTSS 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50052.12241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI2.020e-6795.69Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA1.440e-6187.07Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA7.750e-6188.03Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA8.010e-6186.44Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU2.280e-5984.48Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
A0A836CJT3_9STRA5.200e-5988.03Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWR8_PHATC6.980e-5985.34Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U6DWX5_9STRA5.520e-5785.34Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]
B8BX20_THAPS3.090e-5681.67Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
W7TEP7_9STRA8.060e-5681.03Histone h2b n=4 Tax=Monodopsidaceae TaxID=425072 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50052contigH-paniculata_contig50052:972..1322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue4.8e-52
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size351
Cds size351
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930474.0708525-CDS-H-paniculata_contig50052:971..13221622930474.0708525-CDS-H-paniculata_contig50052:971..1322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50052 972..1322 +
1691481307.8362815-CDS-H-paniculata_contig50052:971..13221691481307.8362815-CDS-H-paniculata_contig50052:971..1322Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50052 972..1322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50052.12241.1prot_H-paniculata_contig50052.12241.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50052 972..1322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50052.12241.1

>prot_H-paniculata_contig50052.12241.1 ID=prot_H-paniculata_contig50052.12241.1|Name=mRNA_H-paniculata_contig50052.12241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGEKKKSSKRLESYSSYIYKVLKQVHPDTGISKRG
MSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAK
HAVSEGTKAVTKFTSS*
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mRNA from alignment at H-paniculata_contig50052:972..1322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50052.12241.1 ID=mRNA_H-paniculata_contig50052.12241.1|Name=mRNA_H-paniculata_contig50052.12241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig50052:972..1322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAGACACCCTCGAAGAAGTCCGCCAAGGCCCCCAAGAAGGCGGG
AGAGAAGAAGAAGAGTAGCAAGAGGTTGGAGTCGTACTCGTCGTACATCT
ACAAGGTGCTGAAGCAGGTGCACCCCGATACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCTTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCTGGCAAGCTGACCCGCTACAACAAGAAGGCGACTCTCTCGTCCC
GCGAGGTGCAGACAGCGGTGCGTCTGATGCTTCCCGGAGAGCTGGCCAAG
CACGCGGTGTCTGAGGGTACGAAGGCCGTGACCAAGTTTACTTCATCCTA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig50052:972..1322+

>mRNA_H-paniculata_contig50052.12241.1 ID=mRNA_H-paniculata_contig50052.12241.1|Name=mRNA_H-paniculata_contig50052.12241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig50052:972..1322+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAGACACCCTCGAAGAAGTCCGCCAAGGCCCCCAAGAAGGCGGG
AGAGAAGAAGAAGAGTAGCAAGAGGTTGGAGTCGTACTCGTCGTACATCT
ACAAGGTGCTGAAGCAGGTGCACCCCGATACGGGTATCTCGAAGCGCGGC
ATGTCCATCATGAACTCTTTCATCAACGACGTGTTCGAGCGCGTGGCCGG
CGAGTCTGGCAAGCTGACCCGCTACAACAAGAAGGCGACTCTCTCGTCCC
GCGAGGTGCAGACAGCGGTGCGTCTGATGCTTCCCGGAGAGCTGGCCAAG
CACGCGGTGTCTGAGGGTACGAAGGCCGTGACCAAGTTTACTTCATCCTA
GATGGCTAAGACACCCTCGAAGAAGTCCGCCAAGGCCCCCAAGAAGGCGG
GAGAGAAGAAGAAGAGTAGCAAGAGGTTGGAGTCGTACTCGTCGTACATC
TACAAGGTGCTGAAGCAGGTGCACCCCGATACGGGTATCTCGAAGCGCGG
CATGTCCATCATGAACTCTTTCATCAACGACGTGTTCGAGCGCGTGGCCG
GCGAGTCTGGCAAGCTGACCCGCTACAACAAGAAGGCGACTCTCTCGTCC
CGCGAGGTGCAGACAGCGGTGCGTCTGATGCTTCCCGGAGAGCTGGCCAA
GCACGCGGTGTCTGAGGGTACGAAGGCCGTGACCAAGTTTACTTCATCCT
AG
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