mRNA_H-paniculata_contig50052.12240.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI) HSP 1 Score: 215 bits (548), Expect = 2.130e-70 Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVNK 369
MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 121
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI) HSP 1 Score: 215 bits (548), Expect = 1.260e-69 Identity = 115/123 (93.50%), Postives = 118/123 (95.93%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVNK 369
MSGKGKGGRG KKS TRSAKAGLQFPVGR+GRFLK+GKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK K
Sbjct: 46 MSGKGKGGRG--KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE) HSP 1 Score: 206 bits (525), Expect = 1.050e-66 Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI) HSP 1 Score: 205 bits (521), Expect = 2.530e-66 Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG KK +RSAKAGLQFPVGRIGRF+KQGKY+SRVG GAPVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRG--KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI) HSP 1 Score: 206 bits (525), Expect = 5.360e-66 Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG KKS ++S+KAGLQFPV RIGR+LK+GKYA+RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct: 52 MSGKGKGGRG--KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA) HSP 1 Score: 202 bits (514), Expect = 3.260e-65 Identity = 108/123 (87.80%), Postives = 115/123 (93.50%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVNK 369
MSGKGKGGRG GKKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK K
Sbjct: 1 MSGKGKGGRG-GKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA) HSP 1 Score: 202 bits (513), Expect = 4.630e-65 Identity = 106/123 (86.18%), Postives = 115/123 (93.50%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVNK 369
MSGKGKGGRG+ KKS T SAKAGLQFPVGRIGR+L+QGKYA+R+GAGAPVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK K
Sbjct: 1 MSGKGKGGRGE-KKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKKSGK 122
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: A0A061QUG5_9CHLO (Histone H2A n=4 Tax=core chlorophytes TaxID=2692248 RepID=A0A061QUG5_9CHLO) HSP 1 Score: 201 bits (512), Expect = 9.710e-65 Identity = 104/123 (84.55%), Postives = 116/123 (94.31%), Query Frame = 1
Query: 1 MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVNK 369
MSG+GKG GKK+V+RSAKAGLQFPVGR+ R+LK+GKYA+R+GAGAPVYLAAVLEYLTAEVLELAGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG+VTIASGGVLPNIH+VLLPKK +K
Sbjct: 1 MSGRGKGKSAAGKKAVSRSAKAGLQFPVGRVARYLKKGKYATRIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIASGGVLPNIHSVLLPKKSDK 123
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.180e-64 Identity = 103/118 (87.29%), Postives = 115/118 (97.46%), Query Frame = 1
Query: 7 GKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
GKGKGGRGD KK+V++SAKAGLQFPVGR+GRFLKQG+YA RVGAGAPVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK
Sbjct: 5 GKGKGGRGD-KKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKK 121
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Match: A0A7S0DT92_9EUKA (Histone H2A n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DT92_9EUKA) HSP 1 Score: 200 bits (508), Expect = 7.830e-64 Identity = 103/122 (84.43%), Postives = 115/122 (94.26%), Query Frame = 1
Query: 1 MSGKGKGGRGDGK--KSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 360
MSGKGKGGRG GK KS TRSA+AGLQFPVGRI RFL++G++A+RVG GAPVYLAAVLEYLTAE+LELAGNAARDNK++RI+PRH+QLA+RNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct: 1 MSGKGKGGRGKGKAVKSTTRSARAGLQFPVGRISRFLRKGRFAARVGGGAPVYLAAVLEYLTAEILELAGNAARDNKRSRIIPRHVQLAIRNDEELNKLLGGVTIASGGVLPNIHAVLLPKK 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50052.12240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50052.12240.1 >prot_H-paniculata_contig50052.12240.1 ID=prot_H-paniculata_contig50052.12240.1|Name=mRNA_H-paniculata_contig50052.12240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp MSGKGKGGRGDGKKSVTRSAKAGLQFPVGRIGRFLKQGKYASRVGAGAPVback to top mRNA from alignment at H-paniculata_contig50052:210..584- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50052.12240.1 ID=mRNA_H-paniculata_contig50052.12240.1|Name=mRNA_H-paniculata_contig50052.12240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig50052:210..584- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50052:210..584- >mRNA_H-paniculata_contig50052.12240.1 ID=mRNA_H-paniculata_contig50052.12240.1|Name=mRNA_H-paniculata_contig50052.12240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig50052:210..584- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |