prot_H-paniculata_contig50034.12239.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig50034.12239.1
Unique Nameprot_H-paniculata_contig50034.12239.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length67
Homology
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BLAST of mRNA_H-paniculata_contig50034.12239.1 vs. uniprot
Match: D8LD63_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD63_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-21
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:    6 LGVLLKLTSQFRIGTFLEERWGTRNWLIIYWVGGLGGNLLSCAASPDKVSRG 57
            L + + LTSQFR+GTFLEERWGTRNWLI+YWVGGLGGNLLSC ASPDKV  G
Sbjct:  244 LHIFMNLTSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPDKVGVG 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50034.12239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD63_ECTSI1.080e-2180.77Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022764Peptidase S54, rhomboid domainPFAMPF01694Rhomboidcoord: 12..55
e-value: 4.7E-5
score: 23.4
IPR006155Josephin domainPROSITEPS50957JOSEPHINcoord: 1..66
score: 9.01
NoneNo IPR availableSUPERFAMILY144091Rhomboid-likecoord: 9..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50034contigH-paniculata_contig50034:704..904 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50034.12239.1mRNA_H-paniculata_contig50034.12239.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig50034 704..1268 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig50034.12239.1 ID=prot_H-paniculata_contig50034.12239.1|Name=mRNA_H-paniculata_contig50034.12239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
LQTIRLGVLLKLTSQFRIGTFLEERWGTRNWLIIYWVGGLGGNLLSCAAS
PDKVSRGEGLRFTLVN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom
IPR006155Josephin