mRNA_H-paniculata_contig50034.12239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50034.12239.1
Unique NamemRNA_H-paniculata_contig50034.12239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig50034.12239.1 vs. uniprot
Match: D8LD63_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD63_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.780e-20
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   16 LGVLLKLTSQFRIGTFLEERWGTRNWLIIYWVGGLGGNLLSCAASPDKVSRG 171
            L + + LTSQFR+GTFLEERWGTRNWLI+YWVGGLGGNLLSC ASPDKV  G
Sbjct:  244 LHIFMNLTSQFRMGTFLEERWGTRNWLIVYWVGGLGGNLLSCVASPDKVGVG 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50034.12239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD63_ECTSI5.780e-2080.77Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50034contigH-paniculata_contig50034:704..1268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog2880.D8LD63
Preferred nameROM1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0705@1,KOG2289@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size565
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.949189-CDS-H-paniculata_contig50034:703..9041622930473.949189-CDS-H-paniculata_contig50034:703..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50034 704..904 +
1691481307.7914736-CDS-H-paniculata_contig50034:703..9041691481307.7914736-CDS-H-paniculata_contig50034:703..904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50034 704..904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.9744117-UTR-H-paniculata_contig50034:904..12681622930473.9744117-UTR-H-paniculata_contig50034:904..1268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50034 905..1268 +
1691481307.813073-UTR-H-paniculata_contig50034:904..12681691481307.813073-UTR-H-paniculata_contig50034:904..1268Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig50034 905..1268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50034.12239.1prot_H-paniculata_contig50034.12239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50034 704..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50034.12239.1

>prot_H-paniculata_contig50034.12239.1 ID=prot_H-paniculata_contig50034.12239.1|Name=mRNA_H-paniculata_contig50034.12239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
LQTIRLGVLLKLTSQFRIGTFLEERWGTRNWLIIYWVGGLGGNLLSCAAS
PDKVSRGEGLRFTLVN*
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mRNA from alignment at H-paniculata_contig50034:704..1268+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50034.12239.1 ID=mRNA_H-paniculata_contig50034.12239.1|Name=mRNA_H-paniculata_contig50034.12239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at H-paniculata_contig50034:704..1268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAAACAATACGCCTCGGTGTCCTCTTGAAGTTGACCTCTCAGTTTCG
AATCGGAACATTTTTGGAGGAAAGGTGGGGCACTAGGAATTGGCTGATTA
TATACTGGGTGGGCGGGCTGGGCGGCAACCTACTAAGCTGTGCGGCGAGC
CCCGACAAGGTGAGCCGAGGAGAAGGTTTAAGGTTTACTCTAGTGAATTA
ACAATCTATGCTATATATATGCCTATTAATAGAATGCAGTAGAACAGTTG
GATACAAATCACGGAAAGTCGCTCGAAAGTAGGTATCGCCATATTAATCA
ACATAGAGTTGTCACCAATATATGCACTTTATTTAAGCATCTCGGCGTGC
GCGAATCGCTCGCTTTTCAGTTGCTCGCTCTTCAGGAAACACGGTGAGCT
GAGGAACGAGCCCCATTTTCGGCCCCTCTTTCGATCGTAGCACACAACAC
AAAGCATTATCAGGTTTTCCGGCCGCACGGAGAGATTTTTTTATTTTTTT
ATTTTTTTTTTAACCCCCGGAAGGCTAAGGCAAAACCCTTTCCGCTGCTT
CCACTCTTCGGAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig50034:704..1268+

>mRNA_H-paniculata_contig50034.12239.1 ID=mRNA_H-paniculata_contig50034.12239.1|Name=mRNA_H-paniculata_contig50034.12239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig50034:704..1268+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCAAACAATACGCCTCGGTGTCCTCTTGAAGTTGACCTCTCAGTTTCG
AATCGGAACATTTTTGGAGGAAAGGTGGGGCACTAGGAATTGGCTGATTA
TATACTGGGTGGGCGGGCTGGGCGGCAACCTACTAAGCTGTGCGGCGAGC
CCCGACAAGGTGAGCCGAGGAGAAGGTTTAAGGTTTACTCTAGTGAATTA
ATTGCAAACAATACGCCTCGGTGTCCTCTTGAAGTTGACCTCTCAGTTTC
GAATCGGAACATTTTTGGAGGAAAGGTGGGGCACTAGGAATTGGCTGATT
ATATACTGGGTGGGCGGGCTGGGCGGCAACCTACTAAGCTGTGCGGCGAG
CCCCGACAAGGTGAGCCGAGGAGAAGGTTTAAGGTTTACTCTAGTGAATT
AA
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