mRNA_H-paniculata_contig5002.12238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5002.12238.1
Unique NamemRNA_H-paniculata_contig5002.12238.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5002.12238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5002contigH-paniculata_contig5002:13271..13947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue1e-10
Seed eggNOG ortholog2880.D7FX85
KEGG koko:K03703
KEGG Pathwayko03420,map03420
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.UvrC Helix-hairpin-helix N-terminal
EggNOG OGs2RRUF@2759,COG0322@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size678
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.7469761-UTR-H-paniculata_contig5002:13270..134371622930473.7469761-UTR-H-paniculata_contig5002:13270..13437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5002 13271..13437 +
1691481307.659686-UTR-H-paniculata_contig5002:13270..134371691481307.659686-UTR-H-paniculata_contig5002:13270..13437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5002 13271..13437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.7657144-CDS-H-paniculata_contig5002:13437..139471622930473.7657144-CDS-H-paniculata_contig5002:13437..13947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 13438..13947 +
1691481307.6840496-CDS-H-paniculata_contig5002:13437..139471691481307.6840496-CDS-H-paniculata_contig5002:13437..13947Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5002 13438..13947 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5002.12238.1prot_H-paniculata_contig5002.12238.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5002 13438..13947 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5002.12238.1

>prot_H-paniculata_contig5002.12238.1 ID=prot_H-paniculata_contig5002.12238.1|Name=mRNA_H-paniculata_contig5002.12238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MRSTLDASELVILLMSQVSQVRALTLFLRPPLVPRSLLRVSLPQRHGIST
TTATRAGFLNCCALRGTMAVGEASHLLSSVGLEEEGLSEAAAPGSEIDEQ
SARRHVHRTGSVADAARADPLRPRPLLRQCLNDVPDEPGVYVMESVEGCK
LYIGKSVKLSARVPSYFSYA
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mRNA from alignment at H-paniculata_contig5002:13271..13947+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5002.12238.1 ID=mRNA_H-paniculata_contig5002.12238.1|Name=mRNA_H-paniculata_contig5002.12238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=677bp|location=Sequence derived from alignment at H-paniculata_contig5002:13271..13947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAATCAAGGCATCCTGCATTTTTGATGGCCTTTCCCGCCATGCATGTTT
GTTCTATCCAAATACGCCAATAATATATTATGTGAAAGCGTGTTATCTTT
GCCGCTGATGGGTTCCAGGCGTGTGTTTTAGATCAGGGGTGCTGAAACGT
GCGGATTGATCATATAGATGCGCTCAACACTGGATGCTTCAGAACTTGTC
ATTCTTCTCATGAGTCAAGTGAGTCAAGTCAGAGCGCTGACTCTCTTCTT
GCGACCACCACTCGTACCGCGATCTCTCCTGCGTGTATCATTACCACAGC
GGCATGGCATTAGCACCACCACCGCTACCCGCGCTGGTTTCTTGAACTGC
TGCGCTCTGCGCGGGACGATGGCCGTTGGTGAAGCTTCCCACCTTCTCAG
CTCGGTAGGCTTAGAAGAGGAAGGTTTGTCAGAAGCTGCCGCACCAGGGT
CAGAAATAGACGAGCAATCAGCGAGGCGTCATGTTCACCGTACCGGCAGC
GTTGCTGACGCCGCTCGCGCTGACCCATTGCGGCCTCGGCCACTGCTCCG
GCAGTGTCTGAACGACGTGCCTGACGAGCCGGGTGTCTATGTGATGGAGT
CGGTGGAAGGGTGCAAGCTCTATATAGGCAAGAGCGTCAAGCTGAGCGCG
AGGGTACCCAGCTACTTTAGTTACGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5002:13271..13947+

>mRNA_H-paniculata_contig5002.12238.1 ID=mRNA_H-paniculata_contig5002.12238.1|Name=mRNA_H-paniculata_contig5002.12238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig5002:13271..13947+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTCAACACTGGATGCTTCAGAACTTGTCATTCTTCTCATGAGTCA
AGTGAGTCAAGTCAGAGCGCTGACTCTCTTCTTGCGACCACCACTCGTAC
CGCGATCTCTCCTGCGTGTATCATTACCACAGCGGCATGGCATTAGCACC
ACCACCGCTACCCGCGCTGGTTTCTTGAACTGCTGCGCTCTGCGCGGGAC
GATGGCCGTTGGTGAAGCTTCCCACCTTCTCAGCTCGGTAGGCTTAGAAG
AGGAAGGTTTGTCAGAAGCTGCCGCACCAGGGTCAGAAATAGACGAGCAA
TCAGCGAGGCGTCATGTTCACCGTACCGGCAGCGTTGCTGACGCCGCTCG
CGCTGACCCATTGCGGCCTCGGCCACTGCTCCGGCAGTGTCTGAACGACG
TGCCTGACGAGCCGGGTGTCTATGTGATGGAGTCGGTGGAAGGGTGCAAG
CTCTATATAGGCAAGAGCGTCAAGCTGAGCGCGAGGGTACCCAGCTACTT
TAGTTACGCCATGCGCTCAACACTGGATGCTTCAGAACTTGTCATTCTTC
TCATGAGTCAAGTGAGTCAAGTCAGAGCGCTGACTCTCTTCTTGCGACCA
CCACTCGTACCGCGATCTCTCCTGCGTGTATCATTACCACAGCGGCATGG
CATTAGCACCACCACCGCTACCCGCGCTGGTTTCTTGAACTGCTGCGCTC
TGCGCGGGACGATGGCCGTTGGTGAAGCTTCCCACCTTCTCAGCTCGGTA
GGCTTAGAAGAGGAAGGTTTGTCAGAAGCTGCCGCACCAGGGTCAGAAAT
AGACGAGCAATCAGCGAGGCGTCATGTTCACCGTACCGGCAGCGTTGCTG
ACGCCGCTCGCGCTGACCCATTGCGGCCTCGGCCACTGCTCCGGCAGTGT
CTGAACGACGTGCCTGACGAGCCGGGTGTCTATGTGATGGAGTCGGTGGA
AGGGTGCAAGCTCTATATAGGCAAGAGCGTCAAGCTGAGCGCGAGGGTAC
CCAGCTACTTTAGTTACGCC
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