mRNA_H-paniculata_contig5001.12236.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5001.12236.1
Unique NamemRNA_H-paniculata_contig5001.12236.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A6H5JKX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX4_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 1.630e-94
Identity = 156/188 (82.98%), Postives = 172/188 (91.49%), Query Frame = 1 
Query:    1 QTVVSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLIMTGASD 564
            + +VSLLFSFMVIWDLPNL RGV ALKTSRL+F Y TI+PQV+ FAKLVGQSFEVQFTIA INTILTTAGLI LG+SGPLVLSFIVF+CSFVPV+GVF+STLPM VAALGDYGMSKVFQI+LM+ GVHAVEAY LNPQIYASKLKLHPVVVIGVLY+AEHLVGVQGLI+AVP AV+VINN+I+    D
Sbjct:  377 KAMVSLLFSFMVIWDLPNLRRGVTALKTSRLSFAYNTISPQVSIFAKLVGQSFEVQFTIAVINTILTTAGLIALGVSGPLVLSFIVFLCSFVPVIGVFISTLPMAVAALGDYGMSKVFQILLMIFGVHAVEAYFLNPQIYASKLKLHPVVVIGVLYVAEHLVGVQGLIMAVPCAVFVINNVILGNVGD 564
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A835YJQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ5_9STRA)

HSP 1 Score: 243 bits (620), Expect = 2.610e-75
Identity = 128/185 (69.19%), Postives = 154/185 (83.24%), Query Frame = 1 
Query:    1 QTVVSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLIMTG 555
            + V+SLLFS MV+WDLP L +   AL+ SRL F Y TI PQ+  F KL+GQSFEVQF IA  NT LTT GL+ LGISG  VLSFIVF+CSFVPV GVFLSTLPMVVAALG+YG+SKVF++++MVL VHAVEAYLLNPQIY++KLKLHP+ ++ VLYM EH+VGVQGLI+AVP AV+V+NN++  G
Sbjct:  296 KAVLSLLFSLMVVWDLPGLCKAGPALRRSRLGFAYDTIGPQLIKFGKLLGQSFEVQFLIALCNTGLTTLGLLALGISGAWVLSFIVFICSFVPVAGVFLSTLPMVVAALGEYGVSKVFEVMIMVLLVHAVEAYLLNPQIYSAKLKLHPITILAVLYMTEHVVGVQGLIVAVPVAVFVLNNVLNIG 480
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A6V1PBQ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PBQ1_HETAK)

HSP 1 Score: 191 bits (486), Expect = 1.450e-57
Identity = 106/186 (56.99%), Postives = 135/186 (72.58%), Query Frame = 1 
Query:    7 VVSLLFSFMVIWDLPNLGRGVKALKTS-RLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLIMTGAS 561
            +VS LFS M+I+D PNL      LK + RLA+ ++  AP+   FA LVGQSFEVQ  IA  NTILTT GL+ L I G +++S +VFVCSF+P+ G+ +ST PM   AL +YG+ KV Q+I MV+ VHAVEAYLLNPQIYASKLKLHP+ V+  LY+ EH  GVQGL +AVP AVY+ N +I+  +S
Sbjct:  106 LVSFLFSSMIIYDYPNLSSKFSQLKENKRLAYPFKIFAPKFKAFATLVGQSFEVQTLIALCNTILTTLGLLVLRIPGAVLMSILVFVCSFIPLAGIIISTFPMCAVALTEYGLGKVGQVIAMVVIVHAVEAYLLNPQIYASKLKLHPLFVLASLYITEHFTGVQGLFLAVPVAVYIYNEIILDQSS 291
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A2V3IVJ3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVJ3_9FLOR)

HSP 1 Score: 194 bits (494), Expect = 7.200e-57
Identity = 100/183 (54.64%), Postives = 136/183 (74.32%), Query Frame = 1 
Query:    1 QTVVSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLIM 549
            + V+SL+FSFM++WDLP + RGVK LKTSRL+F Y  +AP V  F  +VG+SFE Q  IA +NT LTTAGL+ L I G   LS +  VCSF+PV GVF+STLPM + AL +YG +K   +I MV+ VH +EAY+LNPQIY++ L LHP +V+ VLY+AEH  G+ GL++AVP +VY++  +++
Sbjct:  261 KAVLSLIFSFMIMWDLPVISRGVKRLKTSRLSFAYEELAPVVTKFGSVVGKSFEAQGLIATVNTALTTAGLLVLSIPGIGFLSVVTLVCSFIPVAGVFVSTLPMCIIALSEYGAAKAVAVIFMVILVHLIEAYVLNPQIYSAHLHLHPFMVLVVLYIAEHSYGIPGLLMAVPVSVYILRTIMI 443
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A7S3XQP3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQP3_HETAK)

HSP 1 Score: 191 bits (486), Expect = 5.080e-55
Identity = 106/186 (56.99%), Postives = 135/186 (72.58%), Query Frame = 1 
Query:    7 VVSLLFSFMVIWDLPNLGRGVKALKTS-RLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLIMTGAS 561
            +VS LFS M+I+D PNL      LK + RLA+ ++  AP+   FA LVGQSFEVQ  IA  NTILTT GL+ L I G +++S +VFVCSF+P+ G+ +ST PM   AL +YG+ KV Q+I MV+ VHAVEAYLLNPQIYASKLKLHP+ V+  LY+ EH  GVQGL +AVP AVY+ N +I+  +S
Sbjct:  354 LVSFLFSSMIIYDYPNLSSKFSQLKENKRLAYPFKIFAPKFKAFATLVGQSFEVQTLIALCNTILTTLGLLVLRIPGAVLMSILVFVCSFIPLAGIIISTFPMCAVALTEYGLGKVGQVIAMVVIVHAVEAYLLNPQIYASKLKLHPLFVLASLYITEHFTGVQGLFLAVPVAVYIYNEIILDQSS 539
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: W7T7D1_9STRA (Uncharacterized protein family UPF0118 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7D1_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.590e-54
Identity = 97/180 (53.89%), Postives = 133/180 (73.89%), Query Frame = 1 
Query:    7 VVSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLI 546
            ++SLLFSFM+IWDLP L RG + L  SR  + Y  +APQ+  F +LVGQSFEVQ  IA +NT+LTT GL+ L I G   +S +V + SF+PV GVFLSTLPM + A+ +YG+ K+  +ILMV+GVH VEAY L+P IY++ +KLHPV+++  LYM EHL G+QG+ +AVP  ++VI  ++
Sbjct:  533 LLSLLFSFMIIWDLPRLARGTQRLARSRFGYAYSVLAPQLTAFGRLVGQSFEVQSIIALVNTLLTTLGLVFLKIPGYGFMSLVVLITSFIPVFGVFLSTLPMALVAVSEYGVGKMIDVILMVIGVHVVEAYCLSPLIYSATVKLHPVLIVAALYMMEHLAGLQGVFLAVPVTMFVIRQVL 712
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A1Y1HN17_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HN17_KLENI)

HSP 1 Score: 182 bits (463), Expect = 6.440e-52
Identity = 97/179 (54.19%), Postives = 132/179 (73.74%), Query Frame = 1 
Query:   10 VSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLI 546
            VSLLFSFM++WDLP L RG K+L+ SRL+  Y  IAP VATF +L G++ + Q  IA +NT+LT  G + L + G L LS +VF+CSFVPV GVFLST+P+ + AL +YG  ++  +I MV+  HA+EAY+LNP IY++ LKLHP++V+ VL  AEH +GV GL+IAVP AV+ I  ++
Sbjct:  299 VSLLFSFMIVWDLPTLQRGAKSLRESRLSAVYEEIAPAVATFGRLFGKALQAQSAIAVVNTLLTGLGCLFLRLPGVLGLSIVVFICSFVPVAGVFLSTIPIGLVALAEYGAFQLLLVIAMVVVTHAIEAYVLNPVIYSAHLKLHPLLVLAVLVFAEHTLGVWGLLIAVPLAVFFIEYVV 477
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A1X6NW72_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NW72_PORUM)

HSP 1 Score: 181 bits (458), Expect = 6.740e-51
Identity = 94/185 (50.81%), Postives = 136/185 (73.51%), Query Frame = 1 
Query:    7 VVSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLIMTGAS 561
            +V++LFS + +WDLP + +GV++L+ SR    Y  +AP++  FA ++G+SFE Q  IA +NT LTT GL+ LGI G   LS +  +CSF+PV GVF+ST PM+V AL D G++K   ++LMV GVH VEAY+LNPQIY++ L LHP++V+ VLY+AEH+ GV GL++AVP  V+++  L + GA+
Sbjct:  339 LVAILFSAIFLWDLPRIAQGVRSLRHSRARTAYLELAPRLGDFADVLGKSFEAQTMIALVNTSLTTLGLMLLGIPGIGFLSLVTLLCSFIPVAGVFVSTFPMLVLALSDCGLAKSGGVLLMVAGVHVVEAYVLNPQIYSAHLHLHPILVLVVLYVAEHMYGVPGLLLAVPVTVFLLRQLAVPGAT 523
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: M2VTE1_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTE1_GALSU)

HSP 1 Score: 178 bits (452), Expect = 2.380e-50
Identity = 90/181 (49.72%), Postives = 131/181 (72.38%), Query Frame = 1 
Query:    1 QTVVSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNL 543
            + +VSL+FSF+++WDLP + RGV +LK S++   +  +AP +  F  + G+SFE Q  IA  NT LT+ GL+ L I G   LSFIV +CSF+PV+GVF+ST PM+V A+ +YG+ K+  ++ MV+ VH +EAY+LNPQIY+  LKL P++V+ VLY++EH+ GV GLI+ VP  VY++  L
Sbjct:  307 KALVSLVFSFLIVWDLPKIARGVGSLKRSKIGPAFMEVAPHIGEFGVIFGKSFEAQLIIALSNTTLTSLGLMFLRIPGIGFLSFIVLICSFIPVVGVFISTFPMIVVAISEYGIQKMASVVSMVIIVHLIEAYVLNPQIYSVHLKLQPLLVLIVLYISEHIAGVSGLILGVPLLVYILRLL 487
[Close]
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Match: A0A176WNF1_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WNF1_MARPO)

HSP 1 Score: 179 bits (453), Expect = 2.430e-50
Identity = 94/182 (51.65%), Postives = 137/182 (75.27%), Query Frame = 1 
Query:    1 QTVVSLLFSFMVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIAAINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALGDYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEHLVGVQGLIIAVPFAVYVINNLI 546
            Q++VSL+FSFM++WD+P + RGV++LK SRL+  Y+  AP +ATF ++ G++ + Q  IA +NT LT+ GL+ L +SG  +LSF VF+CSFVPV GV +ST+P+ V A  + G+ ++  ++LMV+ VHAVEAY+LNP IY++ LKLHP++ + VL  AEH +GV GLI+AVP AV+ I  +I
Sbjct:  326 QSLVSLIFSFMLVWDMPAIRRGVQSLKESRLSIVYQETAPVIATFGRIFGKALQAQSAIAVVNTALTSLGLLVLRVSGVGLLSFFVFLCSFVPVAGVIISTVPIGVVAFTESGIWQLGLVVLMVILVHAVEAYILNPAIYSAHLKLHPLMALAVLVFAEHALGVWGLIVAVPMAVFFIEYVI 507
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5001.12236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKX4_9PHAE1.630e-9482.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJQ5_9STRA2.610e-7569.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1PBQ1_HETAK1.450e-5756.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2V3IVJ3_9FLOR7.200e-5754.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S3XQP3_HETAK5.080e-5556.99Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7T7D1_9STRA1.590e-5453.89Uncharacterized protein family UPF0118 n=2 Tax=Mon... [more]
A0A1Y1HN17_KLENI6.440e-5254.19Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A1X6NW72_PORUM6.740e-5150.81Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2VTE1_GALSU2.380e-5049.72Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A176WNF1_MARPO2.430e-5051.65Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5001contigH-paniculata_contig5001:10553..14336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.6
Seed ortholog evalue3.1e-74
Seed eggNOG ortholog2880.D7FXE7
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.AI-2E family transporter
EggNOG OGs2RYYV@2759,COG0628@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size564
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5001.12236.1prot_H-paniculata_contig5001.12236.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5001 10553..14306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.5888834-CDS-H-paniculata_contig5001:10552..107021622930473.5888834-CDS-H-paniculata_contig5001:10552..10702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 10553..10702 -
1691481307.5916612-CDS-H-paniculata_contig5001:10552..107021691481307.5916612-CDS-H-paniculata_contig5001:10552..10702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 10553..10702 -
1622930473.6057122-CDS-H-paniculata_contig5001:11554..116201622930473.6057122-CDS-H-paniculata_contig5001:11554..11620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 11555..11620 -
1691481307.6054564-CDS-H-paniculata_contig5001:11554..116201691481307.6054564-CDS-H-paniculata_contig5001:11554..11620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 11555..11620 -
1622930473.6312497-CDS-H-paniculata_contig5001:12207..123471622930473.6312497-CDS-H-paniculata_contig5001:12207..12347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 12208..12347 -
1691481307.6140437-CDS-H-paniculata_contig5001:12207..123471691481307.6140437-CDS-H-paniculata_contig5001:12207..12347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 12208..12347 -
1622930473.6478546-CDS-H-paniculata_contig5001:13567..136521622930473.6478546-CDS-H-paniculata_contig5001:13567..13652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 13568..13652 -
1691481307.622388-CDS-H-paniculata_contig5001:13567..136521691481307.622388-CDS-H-paniculata_contig5001:13567..13652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 13568..13652 -
1622930473.6699219-CDS-H-paniculata_contig5001:14213..143061622930473.6699219-CDS-H-paniculata_contig5001:14213..14306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 14214..14306 -
1691481307.6309822-CDS-H-paniculata_contig5001:14213..143061691481307.6309822-CDS-H-paniculata_contig5001:14213..14306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5001 14214..14306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.683755-UTR-H-paniculata_contig5001:14306..143361622930473.683755-UTR-H-paniculata_contig5001:14306..14336Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5001 14307..14336 -
1691481307.639987-UTR-H-paniculata_contig5001:14306..143361691481307.639987-UTR-H-paniculata_contig5001:14306..14336Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5001 14307..14336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5001.12236.1

>prot_H-paniculata_contig5001.12236.1 ID=prot_H-paniculata_contig5001.12236.1|Name=mRNA_H-paniculata_contig5001.12236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
MVIWDLPNLGRGVKALKTSRLAFGYRTIAPQVATFAKLVGQSFEVQFTIA
AINTILTTAGLICLGISGPLVLSFIVFVCSFVPVLGVFLSTLPMVVAALG
DYGMSKVFQIILMVLGVHAVEAYLLNPQIYASKLKLHPVVVIGVLYMAEH
LVGVQGLIIAVPFAVYVINNLIMTGASD
back to top

mRNA from alignment at H-paniculata_contig5001:10553..14336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5001.12236.1 ID=mRNA_H-paniculata_contig5001.12236.1|Name=mRNA_H-paniculata_contig5001.12236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3784bp|location=Sequence derived from alignment at H-paniculata_contig5001:10553..14336- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAGTGGTGAGCCTTTTGTTCAGCTTCATGGTCATCTGGGATCTCCC
AAATCTCGGACGGGGAGTCAAGGCGCTCAAGACTAGCAGGCTGGCCTTCG
GCTACCGAACGATCGCCCCGCAGGTATTTATTGATGGGTGCTTGCTGTTT
GTTGATTGCTCCTCGTGCTCCTCGTGCTCCTCGTGCTCGTCACCTACCTA
CCTATGTCCTACTCGTAGGTAGCGTACTAGTAGGAGTCAAATGCCGCCGA
ACCAAAAAATCGTTCTGCCGCTTTCGATTTGCACCTGTTGAGCACAAGCA
CTGACGCGGATCTTGACAGGATAGTTCCAAAAGGGGAAACCCTTGTTCAT
GGAAAGGCTCCACTAGTCACACTAACTGCTGTAGTCACATCAATCAGCTA
GTTGGCTCTTTTGAAAGATGCATGTCCAATATTTAAACTCTAAGTCTAAG
TGCAGGTGTCGAACCTGAAGCTACTATGTTCTTGTGTTTCCGTATCAGCC
GCTTGGACCAACCCCAGACAACGAGCACCCTGCCTCAAGATGCAGCCAGC
CATTGGTTGTCTTTATTTGTCTTGTTGGTCTGTCGCTCATCACCATCACT
ATCACTTGGCGCTGGACTATGCGCCGTCATTGATTTGTTTTTGTGTCCTG
CTTGCTGTCTCTGCTGTGTGCATGCATCCTGTAGGTGGCCACTTTCGCGA
AGTTGGTGGGTCAGAGCTTCGAGGTGCAGTTCACAATTGCAGCAATCAAC
ACAATACTCACCACTGCCGGTATGGACACACACAACAAGCAACACACAAC
GTATCCACAAAGAGAGAAGCAAACACGTTAATATCAAGCCCGTATTTATT
CATATTTCTAGTTTACCGTAGATTGTCTCAAAAATGGTAGTGCAGAGTTG
CGTCACTTGTGGTCGGTGCTTCAGGTGCTTTGGCTGTTCTAGGTTGCTTA
GTTGCTGCGGTCTCTCAGCGGCCTTAAGTGATCAATCAATCGTTTAATGA
AGTGAAACAGTCCTACACTACGGCGCATTTGAGGGCATCTCTATTCGTTT
GCCGTTTCAACTCTCACGTCTGCATACATTGAAGGCACACACCTTATCTT
GTCTTCCTTACATTTCCTTACCTTACCTTGTGTATCGTGCCTACTCAACT
TATATGCTATTTATAGCACAGTATTGTTAAATGCAGTGAGCATGATTGAT
ATGCATTCACTGGCACACACGAGTTCGGTACGCTGCCATTTTCAGCATGT
TTAATTTCAACAGTATCTTTAGGATCCACAATTACGTGATTAAAAATATA
TCAGCATGGTCATCCCGGTGCGATATTCACAGGGAGTGCGATATCTCCGG
CTTTTACAATACTCATTACTGCGAGATGCTGTCGGTACACATTTGGGCTT
AAATGGCTGAAAAGCCCTCTTATGTTAGTGATGCCCAGTGATGGCGTGAA
CACTCATGAAAATGCAACTGTTACAATTTGGCTCACTGAACCGCATTGGC
TTTCACCATGGCTTAATAAGAGACCATGGAACGCTCATGGGACGGAAGTT
TATTTAAGGGCGGGATGGAATCCCATCGAGTCCCTTTCCGTGACCTCTTG
TCCCATCCCGGAACTCATACGTCCTGTCCATCCCGTTATCTCCGCCACAT
CCTGTCAAAACATTCATCTCCCTTGTCCCGTCCGTCCCGTCGTCCAGTAT
GAAGCCCTGGCTGTTCGTTGTTGTAAATGCTGACATCGTCTGTCACTTCA
ACTTCCGTTTTGTCGTATGAACTATCAACTGGCGAATGTATGTGACATCA
TTGCTGATGTAATATCCTATCAATACCTCGCATGACCTGCAAGTCACAGG
AAACATAAAAATCACATCAATTGCGTTGTCCACATTACAAGATCTTGTGA
TCCACTGCTGCTCCTCTTAAGAAAGACTTGTCTTGTCGTGTTGTCGTTTT
TCGTTTGTTGGCTGTTGGTTGTTCACGGTGTTGGCGCAGGTCTGATATGT
TTGGGTATCAGTGGGCCGTTGGTGCTATCGTTCATCGTATTCGTCTGCAG
CTTTGTACCTGTGTTGGGTGTATTTTTGTCAACCTTGCCCATGGTGGTGG
CCGCCCTTGGAGACTACGGCATGAGTAAGGTGACTTCTAGCGCACATTTT
TACTTTTTACTTAGTAACGCCTCAGTATCAACATTCAAGGTCACGTACCC
TGCAACATGCAACGTGCCCAACATTACAGGATTACTAAGGCAATGTGTCT
GAGCTGGTTGGGGATGTGATGATGTGAGGTTCCGCTAATGCAAGACGAGA
TTTGCGTTGGTATCGGTGTCAATGTTGTATTTGTTTGGGTCAGAATATAT
TCTGTCAAGTCTATCTTGCATGCCAGGGGTTCTGTGGTCGTTCCGTTGTC
AGGTCTCAAGGAATGCAACTTGGACAGACTTGGCAACGGAGTCAGGCGTA
TGGCGCTTTACATCATTGTGAAAGGTTCAAGGTTGTACAAAAGTTGGTTT
GGTTTACTGTAGCATACAGAGGAGACCTCGTATACTCTTGTCAAAAGCTA
GATGTGGTGTATGCCGTTCAACTGACTAGTTTAATGTACAAGCTACTATG
CGATCGAAACGAGCTGGTCGTAGGTTATCTAGACGTGTCTCCTCTCTTGC
CTTGTCTTTTCGTACTGCTATTTGAACTATTTAAACTATTTGAGCTTGTT
CGCGTTCGATATGCAGGTTTTCCAAATCATCCTCATGGTGCTCGGCGTAC
ACGCGGTCGAAGCGTATCTCCTCAACCCCCAGGTATATATTGTACAGGTG
TACATGCAATACCCTCTAGTAGGCACTTACAGCACGTACACCAAGCTATC
GGCCATCGAGTTATCACCCCGCACATTGCCATAGGCGTGCTCATGCTTAT
GCTCATGGTCTCTTGTGTTGTACACGTGCAGTGCCTGCCTCAGGTTAATT
CTCTTTGAAGTTGAACGAGCTCGTTTCACGCAGTATGGGTTGAGCCATCT
TGCGCGTTTGTTTGCCTTTTCACCCTCCTTCGGCCAACAGTAGACGCCTC
GAGCTATGCAGCATGAATCAAGTCAAGTCACAATGAATTTGCCGTTATAC
GTAATTTGCTCTCACGTCTCTACGATGCATCCTATATTATCCCTTTACCC
GTTAGGAACCAGACTTCTTAATGGCCAAAATGGTAGTTTTGCCAACGACC
AGTTGTAAATGATGACGAATACATTGACAGCATACCTTAACCAGCTCTCC
ACGGTTGGTTAGTGCATTTCATGTGCAAAGAGGGGTCCATTTTTTTGTCG
TTTGGGGGTCCTTTATCGTGAATATAGTGTAGAGCGAGTATGGGCAAACA
CTGTCTTTTTTCGTAATATCCAGATAATCAGCAATCAGCAATAAACAACA
AATAAGCACCCCACAGTTGATCAAGGGTTCGGAAGTTCCTTAAGGGTTAC
GTGAACTATTATTACGAACAGATTCTATCTCCTCTTTCGATAGATGCGTG
TCCAGTCCAGCCAGCCTACTCTAAAATAGTACTAGGCCTGCAACGTTGCG
TCAGAACATGATACATAACGTCACTTTTGTTTCCGTTGCACGTATTGTCC
TTCGACTGATTATACCATACCATCGTGTCAACAGATATATGCGTCAAAGC
TGAAGCTCCATCCTGTCGTGGTGATTGGCGTCCTATATATGGCAGAGCAT
CTTGTGGGAGTACAAGGCCTCATCATCGCTGTTCCTTTTGCCGTCTACGT
TATTAACAACCTCATCATGACGGGCGCATCAGAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5001:10553..14336-

>mRNA_H-paniculata_contig5001.12236.1 ID=mRNA_H-paniculata_contig5001.12236.1|Name=mRNA_H-paniculata_contig5001.12236.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig5001:10553..14336- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCATCTGGGATCTCCCAAATCTCGGACGGGGAGTCAAGGCGCTCAA
GACTAGCAGGCTGGCCTTCGGCTACCGAACGATCGCCCCGCAGATGGTCA
TCTGGGATCTCCCAAATCTCGGACGGGGAGTCAAGGCGCTCAAGACTAGC
AGGCTGGCCTTCGGCTACCGAACGATCGCCCCGCAGGTGGCCACTTTCGC
GAAGTTGGTGGGTCAGAGCTTCGAGGTGCAGTTCACAATTGCAGCAATCA
ACACAATACTCACCACTGCCGGTGGCCACTTTCGCGAAGTTGGTGGGTCA
GAGCTTCGAGGTGCAGTTCACAATTGCAGCAATCAACACAATACTCACCA
CTGCCGGTCTGATATGTTTGGGTATCAGTGGGCCGTTGGTGCTATCGTTC
ATCGTATTCGTCTGCAGCTTTGTACCTGTGTTGGGTGTATTTTTGTCAAC
CTTGCCCATGGTGGTGGCCGCCCTTGGAGACTACGGCATGAGTAAGGTCT
GATATGTTTGGGTATCAGTGGGCCGTTGGTGCTATCGTTCATCGTATTCG
TCTGCAGCTTTGTACCTGTGTTGGGTGTATTTTTGTCAACCTTGCCCATG
GTGGTGGCCGCCCTTGGAGACTACGGCATGAGTAAGGTTTTCCAAATCAT
CCTCATGGTGCTCGGCGTACACGCGGTCGAAGCGTATCTCCTCAACCCCC
AGGTTTTCCAAATCATCCTCATGGTGCTCGGCGTACACGCGGTCGAAGCG
TATCTCCTCAACCCCCAGATATATGCGTCAAAGCTGAAGCTCCATCCTGT
CGTGGTGATTGGCGTCCTATATATGGCAGAGCATCTTGTGGGAGTACAAG
GCCTCATCATCGCTGTTCCTTTTGCCGTCTACGTTATTAACAACCTCATC
ATGACGGGCGCATCAGATATATATGCGTCAAAGCTGAAGCTCCATCCTGT
CGTGGTGATTGGCGTCCTATATATGGCAGAGCATCTTGTGGGAGTACAAG
GCCTCATCATCGCTGTTCCTTTTGCCGTCTACGTTATTAACAACCTCATC
ATGACGGGCGCATCAGAT
back to top