mRNA_H-paniculata_contig50002.12235.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig50002.12235.1
Unique NamemRNA_H-paniculata_contig50002.12235.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: D8LD00_ECTSI (Protein arginine methyltransferase NDUFAF7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD00_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.720e-19
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1
Query:    1 QVPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFLAEEPHITEEQ 198
            +VPVLSDPG ADMTADV+F LLRR+ + V+G + HGPV Q +FL EMGI  RL  LAE+PH+T EQ
Sbjct:  381 EVPVLSDPGEADMTADVNFGLLRRVVAGVEGARPHGPVGQGQFLREMGIGARLTALAEQPHVTAEQ 446          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: A0A836CMV2_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.310e-15
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 QVPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFLAEEPHITEEQ 198
            +V VL++PG+AD+TADVDF+ LRR A AV G   HGPV Q  FL  MG  ER   L E+PHIT+ Q
Sbjct:  339 EVHVLAEPGMADITADVDFAALRRCADAVPGAVCHGPVPQGVFLQTMGAAERAAVLVEQPHITDAQ 404          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: S8C3A7_9LAMI (Protein arginine methyltransferase NDUFAF7 (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C3A7_9LAMI)

HSP 1 Score: 65.9 bits (159), Expect = 7.310e-11
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    4 VPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFLAEEPHITEEQVGGRIRRG 222
            V +L DPGLAD++A VDF+ ++  A  V GV  HGPVTQ +FLG +GI  R++ L E  + ++EQ    +R G
Sbjct:  315 VGILDDPGLADLSAYVDFAAVKHSAQEVSGVSVHGPVTQSQFLGSLGINFRIEALLE--NCSDEQQAESLRSG 385          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: A0A6J8AQP8_MYTCO (Protein arginine methyltransferase NDUFAF7 n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8AQP8_MYTCO)

HSP 1 Score: 63.2 bits (152), Expect = 6.560e-10
Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   10 VLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFL 168
            VL DPG AD+TADVDFS  R +  + + + + GPVTQ+EFL  MGI  RLK L
Sbjct:  326 VLCDPGTADLTADVDFSFFRHLCLSTKSISSFGPVTQREFLQNMGIHLRLKML 378          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: UPI000E6E1CF5 (protein arginine methyltransferase NDUFAF7, mitochondrial n=1 Tax=Ctenocephalides felis TaxID=7515 RepID=UPI000E6E1CF5)

HSP 1 Score: 62.4 bits (150), Expect = 1.230e-9
Identity = 31/52 (59.62%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   13 LSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFL 168
            L DPG AD+TAD+DFS ++RIA A +   T GPVTQ++FL  MGI  RLK L
Sbjct:  328 LIDPGTADLTADIDFSQIKRIAEANERCITFGPVTQRDFLKRMGIDVRLKML 379          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: UPI000C1D415D (protein arginine methyltransferase NDUFAF7, mitochondrial-like isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D415D)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-9
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:    4 VPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFLAEEPHITEEQ 198
            V +L +PG AD++A VDF+ +R  A  V GV  HGP+TQ +FLG +GI  R++ L E  + TEEQ
Sbjct:  365 VDILDNPGSADLSAYVDFAAIRHSAEEVSGVSVHGPMTQSQFLGSLGINFRVEALLE--NCTEEQ 427          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: I1RN42_GIBZE (Protein arginine methyltransferase NDUFAF7 n=10 Tax=Fusarium sambucinum species complex TaxID=569360 RepID=I1RN42_GIBZE)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-9
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 QVPVLSDPGLADMTADVDFSLLRRIAS-AVQGVKTHGPVTQKEFLGEMGIVERLKFLAEEPHITEEQV 201
            +V   S PGL D++ADVDF+ +  +A  A +GV+ HGPVTQ +FLG MGI ER + L + P + ++ V
Sbjct:  401 RVSPFSAPGLVDLSADVDFTAIAEVAMLASEGVEVHGPVTQGDFLGVMGIRERAEQLTKAPGVEKDTV 468          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: A0A7S3K2S0_9STRA (Protein arginine methyltransferase NDUFAF7 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2S0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.620e-9
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 QVPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFLAEEPHITEEQV 201
            Q+  L DPGL D+T DVDF    R A+ V+G    G + Q EFLG MGIVERL+ L     +T++ +
Sbjct:  253 QLSPLCDPGLVDLTIDVDFQACGRQAAKVEGAAVFGGLEQGEFLGRMGIVERLQALLNNDSLTDDDI 319          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: UPI000874E64C (protein arginine methyltransferase NDUFAF7, mitochondrial n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000874E64C)

HSP 1 Score: 62.0 bits (149), Expect = 1.680e-9
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 1
Query:    1 QVPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFLA 171
            QV  L  PG AD+TADVDFSLLR +A+ V GV T GP TQK FL + G+  R K LA
Sbjct:  322 QVDPLVLPGTADLTADVDFSLLRNVANEVDGVITLGPSTQKNFLLKTGLEYRFKALA 378          
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Match: A0A210PW02_MIZYE (Protein arginine methyltransferase NDUFAF7 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PW02_MIZYE)

HSP 1 Score: 61.6 bits (148), Expect = 2.290e-9
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 QVPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIVERLKFL 168
            Q   L DPG AD+TADVDFS LR +A +   VK  GPVTQK+FL  MGI+ RL+ L
Sbjct:  322 QHDALKDPGTADLTADVDFSYLRSMAESK--VKVFGPVTQKDFLHNMGILARLQML 375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50002.12235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD00_ECTSI2.720e-1965.15Protein arginine methyltransferase NDUFAF7 n=2 Tax... [more]
A0A836CMV2_9STRA8.310e-1557.58Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
S8C3A7_9LAMI7.310e-1146.58Protein arginine methyltransferase NDUFAF7 (Fragme... [more]
A0A6J8AQP8_MYTCO6.560e-1056.60Protein arginine methyltransferase NDUFAF7 n=2 Tax... [more]
UPI000E6E1CF51.230e-959.62protein arginine methyltransferase NDUFAF7, mitoch... [more]
UPI000C1D415D1.240e-949.23protein arginine methyltransferase NDUFAF7, mitoch... [more]
I1RN42_GIBZE1.240e-947.06Protein arginine methyltransferase NDUFAF7 n=10 Ta... [more]
A0A7S3K2S0_9STRA1.620e-946.27Protein arginine methyltransferase NDUFAF7 n=1 Tax... [more]
UPI000874E64C1.680e-959.65protein arginine methyltransferase NDUFAF7, mitoch... [more]
A0A210PW02_MIZYE2.290e-958.93Protein arginine methyltransferase NDUFAF7 n=2 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig50002contigH-paniculata_contig50002:230..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D8LD00
KEGG koko:K18164
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006082,GO:0006091,GO:0006112,GO:0006139,GO:0006163,GO:0006520,GO:0006536,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009064,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009653,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010257,GO:0010506,GO:0010507,GO:0010638,GO:0010821,GO:0010822,GO:0015980,GO:0016043,GO:0016192,GO:0017144,GO:0019222,GO:0019637,GO:0019693,GO:0019752,GO:0022603,GO:0022607,GO:0030154,GO:0030435,GO:0030587,GO:0031154,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0032502,GO:0032981,GO:0033043,GO:0033108,GO:0034622,GO:0034641,GO:0040011,GO:0042330,GO:0042331,GO:0043052,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043933,GO:0043934,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044262,GO:0044264,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046034,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055086,GO:0055114,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0072521,GO:0090140,GO:0090141,GO:0090702,GO:0098657,GO:0099120,GO:1901135,GO:1901360,GO:1901564,GO:1901605
EggNOG free text desc.protein-arginine omega-N symmetric methyltransferase activity
EggNOG OGsCOG1565@1,KOG2901@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930473.5129688-CDS-H-paniculata_contig50002:229..4511622930473.5129688-CDS-H-paniculata_contig50002:229..451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50002 230..451 -
1691481307.5738032-CDS-H-paniculata_contig50002:229..4511691481307.5738032-CDS-H-paniculata_contig50002:229..451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig50002 230..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig50002.12235.1prot_H-paniculata_contig50002.12235.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig50002 230..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig50002.12235.1

>prot_H-paniculata_contig50002.12235.1 ID=prot_H-paniculata_contig50002.12235.1|Name=mRNA_H-paniculata_contig50002.12235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
QVPVLSDPGLADMTADVDFSLLRRIASAVQGVKTHGPVTQKEFLGEMGIV
ERLKFLAEEPHITEEQVGGRIRRG
back to top

mRNA from alignment at H-paniculata_contig50002:230..451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig50002.12235.1 ID=mRNA_H-paniculata_contig50002.12235.1|Name=mRNA_H-paniculata_contig50002.12235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at H-paniculata_contig50002:230..451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCCGGTTCTTTCCGACCCCGGACTTGCAGATATGACCGCGGACGT TGATTTCTCGTTGCTGAGACGTATTGCGTCAGCGGTACAGGGGGTAAAAA CGCATGGGCCTGTAACTCAAAAGGAGTTTCTTGGGGAGATGGGAATCGTG GAGAGGCTCAAGTTTCTGGCTGAAGAACCGCACATCACGGAAGAGCAGGT GGGGGGCCGTATACGCCGAGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig50002:230..451-

>mRNA_H-paniculata_contig50002.12235.1 ID=mRNA_H-paniculata_contig50002.12235.1|Name=mRNA_H-paniculata_contig50002.12235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig50002:230..451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCCGGTTCTTTCCGACCCCGGACTTGCAGATATGACCGCGGACGT
TGATTTCTCGTTGCTGAGACGTATTGCGTCAGCGGTACAGGGGGTAAAAA
CGCATGGGCCTGTAACTCAAAAGGAGTTTCTTGGGGAGATGGGAATCGTG
GAGAGGCTCAAGTTTCTGGCTGAAGAACCGCACATCACGGAAGAGCAGGT
GGGGGGCCGTATACGCCGAGGTCAGGTGCCGGTTCTTTCCGACCCCGGAC
TTGCAGATATGACCGCGGACGTTGATTTCTCGTTGCTGAGACGTATTGCG
TCAGCGGTACAGGGGGTAAAAACGCATGGGCCTGTAACTCAAAAGGAGTT
TCTTGGGGAGATGGGAATCGTGGAGAGGCTCAAGTTTCTGGCTGAAGAAC
CGCACATCACGGAAGAGCAGGTGGGGGGCCGTATACGCCGAGGT
back to top