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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 2154 |
| Cds size | 1881 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig500.12233.1 >prot_H-paniculata_contig500.12233.1 ID=prot_H-paniculata_contig500.12233.1|Name=mRNA_H-paniculata_contig500.12233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=627bp
MANSTVGGLLSNAGEGGFAAVQARVESLSMDGGSRGVGVGVSGAPQHMMH
AEHQQLDIQQKKYEHYLQQQQQQQQQQTDSLQQQLPPYPQPSSSGGGGGG
GDGGRGGAAGLGFIDSLPNPQQQQHQHHQQQQQQQAAAAASGPGSSTISD
LNSNNPPLNGWNPIQPIFSNDPFSQGSSNTGNINVNMKSATEEISVSDAN
SQGFPMQPPGGGGSGSQEQLIIGDMLGSTSSLSMGPGDTDGLSPSVNNTP
QAAASEWVEYYDVNQNASYWSNGTTSVWVNPHAEKEKQQQQQQQQPLHIQ
QQQQHAQQQPQQRQGVVWGQQSVPGDGGQQAAWNMQQHQQDGPPSYQSND
SVGGGSAEGASTFMLSPANVLGQQSSIPPLGGGQQNTLGNPLQHGEGVGA
RGKLGDFSSARGGGVASEERVGVSGRVGQQSDLQQQQQQQQQQQQQQQQQ
QQQLQQPQPQPQQLQGRGWGDTPPRSNSQGNSGSCSQAGNPPGLSSAWEN
APAGVAASGPQGSAWQQDGKLQQHIQKPQQRTLGQPPRGGGVRTPGGGLA
DDGGSGDTWGSPLHDQRQQQHHQSQGSSSSSSSSTTANNNSSELQRVRET
SRQVPPGAARTQAQALPKPYTPNKHK* back to topmRNA from alignment at H-paniculata_contig500:30218..34176+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig500.12233.1 ID=mRNA_H-paniculata_contig500.12233.1|Name=mRNA_H-paniculata_contig500.12233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3959bp|location=Sequence derived from alignment at H-paniculata_contig500:30218..34176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGTTGGTCGCGTGGAACTTGAGTCCAGAGGACATGGCGAACAGTACGG
TAGGTGGCCTTCTGTCCAATGCCGGGGAGGGTGGCTTTGCAGCTGTCCAA
GCACGGGTCGAGTCCTTGAGTATGGACGGCGGATCCAGGGGGGTCGGGGT
AGGCGTGAGCGGTGCTCCACAGCACATGATGCACGCAGAACACCAACAAT
TGGATATCCAGCAGGTACTGCTTGGTTACAACTAGCACATAGTACGTCAC
CGCATTGTGATACTGACGTTATCAAATTGCTCGTGCTCTTGTACGTCGTA
CCCGCACCCGGAGAGGGCTGTCGGATCGGCCCGAGGGTGTTTGTTTTTCA
AGTCCGACTTTGTTGACAAGGACGGTGCTAGTGACACCGAGAGTTGTATT
GGAAATATCTCTTTGAGGTCTATCTGTCATTAGATAGACGTGCACTTTCT
AACGGACATGGACTCCGTTCTGAAGAAAGTAGAACCTGAGAAACCTCTCC
CCCGGGGCGTTCTGACAGTGCTCTACTATTTGATGGTTACTTTTTGGTTG
AATTGCGTGCATGTCAAGGTTTCTCTCTGACATGCGTATAGTTTATGGCG
AAGGGAGCGCTTCCTAACCACCCCCCGCTCCCGCCCCCGCCCCCGCCCCC
GTCCTCGCCCTCGCCCCCGTGCCAACGCCACTACGATGCTTCGCCAGAAA
AAGTACGAACATTATCTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAC
GGATTCACTGCAGCAACAGCTCCCACCCTACCCGCAGCCGTCGTCAAGCG
GCGGCGGTGGCGGCGGTGGCGACGGTGGCCGGGGAGGAGCAGCAGGCTTG
GGTTTCATAGACTCCCTCCCCAACCCTCAGCAGCAGCAGCATCAACATCA
CCAACAACAACAACAGCAGCAGGCAGCGGCTGCAGCGAGCGGTCCGGGTT
CGTCGACAATCTCCGATCTGAACAGTAACAACCCACCCCTGAACGGCTGG
AACCCAATACAACCAATATTTTCCAATGATCCTTTCTCCCAGGGTTCTTC
CAACACAGGCAACATCAATGTGAACATGAAGAGCGCCACGGAGGAAATTT
CAGTGTCGGATGCCAACAGCCAGGGCTTCCCGATGCAGCCTCCCGGGGGG
GGCGGGAGCGGCTCTCAAGAGCAACTGATCATCGGAGATATGTTGGGGTC
GACATCTAGCTTGTCTATGGGGCCAGGGGACACAGATGGCCTGTCTCCGT
CGGTTAACAACACTCCGCAGGCGGCCGCAAGCGAGTGGGTCGAGTATTAT
GACGTTAATCAAAACGCTTCCTATTGGAGCAACGGGACAACGTCGGTGAG
TTTTTTTTTCGTCTGTTTGCCATTTTTTATTTTGGTTTTCATGTTGCTAC
CTGCTGCGAACCCTGCAGCAGGGACATCATTGCCTGCTGGAAAGGTGCGA
TATAAGTTGTGGCGATCCCAATCGTAGTTGGATGTGCTTCTCTCGTCTTG
GTTGGTCGGAACTCAAGAGTATGCGTCCCCATCTACATTCAGCTACTACT
CGGTCTCCTACTTTCTTTGAATCTGTGCCAAACCGAACAGCGGGTTCAAT
TTGATATCTTGTTCACAACGTTGCGTTGCTCTTGGTCCATGTTCTCGCTA
TTTTCGAAATTCTCTGCAAATCGCTATCTACCTGCAGGTTTGGGTAAACC
CGCACGCGGAGAAAGAAAAGCAGCAGCAGCAACAACAACAACAGCCCCTA
CACATACAGCAACAGCAACAGCATGCCCAGCAGCAGCCCCAACAGCGACA
GGGTGTAGTTTGGGGACAGCAATCGGTTCCGGGAGATGGAGGGCAGCAAG
CAGCCTGGAACATGCAACAGCACCAGCAGGACGGCCCGCCATCTTATCAA
AGCAATGACAGTGTGGGCGGCGGCAGCGCGGAGGGAGCGTCGACGTTTAT
GCTGTCCCCGGCCAACGTCTTGGGGCAGCAAAGTTCAATCCCTCCCTTGG
GTGGCGGGCAGCAAAACACACTCGGAAACCCGCTTCAGCATGGAGAAGGG
GTAGGGGCCAGGGGGAAATTAGGCGATTTTTCTTCCGCTCGTGGAGGTGG
TGTTGCTAGCGAGGAGAGGGTCGGAGTTAGCGGGCGTGTTGGACAGCAAT
CAGATCTGCAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAG
CAACAGCAACAGCAGCAGCTGCAGCAGCCGCAGCCGCAGCCGCAGCAATT
GCAAGGCCGGGGATGGGGAGACACCCCCCCGCGTAGCAACAGCCAAGGAA
ACAGCGGTAGCTGTAGCCAAGCAGGCAACCCTCCGGGTTTGTCATCGGCG
TGGGAGAATGCTCCTGCTGGGGTAGCAGCATCTGGTCCACAGGGGAGCGC
GTGGCAGCAGGATGGGAAGCTCCAGCAGCATATTCAGGTGCGTGTCCTTG
CTAGAATTATACCTACTTTTCTCCTGTTGTATCAATAGCGGCCCGCGGTA
TGTCGGGGGCACCACATTTTTATTCAAGCCAAGAGTCCGCCTCGAAAGAA
CGGCACAGGCGGTACATTGCACCCCCTATTTCACCCCAAACATCGAGGGA
CCATCCCTGGCAGCCAAAGGCATCTGAGAAATGCGTTTTTATGTCCCTGA
TTCAAGTGGTATCTAGGTGTATCTCAGTTGATTTCCCTTGTTGGTATGAT
GATTTAACGCAAACACTAGCCGTAATAATACCTGGTTCCGGAGTTCTTAG
TGCCGAGCACCATAACCAAAGTTTTTCGCGAGACAGGACAAAGCGTCGTT
ATCCAGAAATCGATCAGTATGGTGGCTGGTTCAGCGATCACGGACCCATT
CAACAGGTTTAGCGTTAGGCAGCATTTTTGTTCCTAGTAGAGACTGGTGA
GGTCTCCGCACGGAATATATTTTTACAGTTCCGCCAAATATAGTCCTTAC
GGTACCCTTCATCGTGCCAATTCCCCCTGGGAAATTATCGTTGCTCAAAA
TTGGCTGCAACAGAAGCCTCAGCAGCGGACGCTGGGGCAGCCACCGAGAG
GAGGGGGAGTGCGTACCCCTGGGGGAGGGCTGGCGGATGATGGCGGATCC
GGTGATACGTGGGGCTCGCCGTTGCATGACCAGCGGCAGCAGCAACATCA
CCAGTCACAGGGGAGGCAGCAGTCACAACAGCCCTCTCTGGATCCTGCGG
GAGTCACCGCTCGCAGTAACTTGCAGGTGAAGAACATGGGTTTTGTTTTT
TTGTTTCCGCGGTGATCGTGAGGAGGGTGTTTTGAGCAGAAGAATATTGT
TGGTTAGTCGGTTGCGTAGAGACTAGGCGAGGAGAATGTCTCGCCTACCT
GCGGTGCATTGCAGTGGTGTGTAGACAAGCATTGTTGATGGCGTCCATGA
CCAATGTTTTGTTTTGCCTTGTCTGGATACCCCCTGTACCCTTCTGTAAT
GAGGGCACATGTACGCAAAGTACGCTTCTCAGGTCATTCCAATGTGTCCG
CACAATAACAGTGTACTTTCATGGCACATGACACAGGTCGGCTTCAACGC
ATGCTCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAACCGCC
AACAACAACAGCAGCGAGCTCCAGCGGGTGAGGGAGACTTCCCGGCAGGT
CCCGCCGGGCGCGGCCCGGACCCAAGCCCAGGCGCTGCCCAAGCCCTACA
CGCCAAACAAACACAAGTAGTCGCCGAGCACATGCGCCAGGCTCAACAGC
AACAGCGCCAGCAGAAGCAGCATGGTGCACCTCGCGGGGCTGGCGTGCAT
TGGAGGGGAGGAGCCTCAGATCAACATCGACAGCACCAGGTTGGGGGTGG
GGCCCTTCCTGGTGGCCCTGGTGGAGGTCCAGGGTGGGGCAACAATAGCA
CGGCGTGGCCAACAGTGGGAGAGAGCCTGGTCGGGGGGGTTGGTGGGCAG
CGAGGAGCT back to topCoding sequence (CDS) from alignment at H-paniculata_contig500:30218..34176+ >mRNA_H-paniculata_contig500.12233.1 ID=mRNA_H-paniculata_contig500.12233.1|Name=mRNA_H-paniculata_contig500.12233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3762bp|location=Sequence derived from alignment at H-paniculata_contig500:30218..34176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAACAGTACGGTAGGTGGCCTTCTGTCCAATGCCGGGGAGGGTGG
CTTTGCAGCTGTCCAAGCACGGGTCGAGTCCTTGAGTATGGACGGCGGAT
CCAGGGGGGTCGGGGTAGGCGTGAGCGGTGCTCCACAGCACATGATGCAC
GCAGAACACCAACAATTGGATATCCAGCAGATGGCGAACAGTACGGTAGG
TGGCCTTCTGTCCAATGCCGGGGAGGGTGGCTTTGCAGCTGTCCAAGCAC
GGGTCGAGTCCTTGAGTATGGACGGCGGATCCAGGGGGGTCGGGGTAGGC
GTGAGCGGTGCTCCACAGCACATGATGCACGCAGAACACCAACAATTGGA
TATCCAGCAGAAAAAGTACGAACATTATCTCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGACGGATTCACTGCAGCAACAGCTCCCACCCTACCCGCAG
CCGTCGTCAAGCGGCGGCGGTGGCGGCGGTGGCGACGGTGGCCGGGGAGG
AGCAGCAGGCTTGGGTTTCATAGACTCCCTCCCCAACCCTCAGCAGCAGC
AGCATCAACATCACCAACAACAACAACAGCAGCAGGCAGCGGCTGCAGCG
AGCGGTCCGGGTTCGTCGACAATCTCCGATCTGAACAGTAACAACCCACC
CCTGAACGGCTGGAACCCAATACAACCAATATTTTCCAATGATCCTTTCT
CCCAGGGTTCTTCCAACACAGGCAACATCAATGTGAACATGAAGAGCGCC
ACGGAGGAAATTTCAGTGTCGGATGCCAACAGCCAGGGCTTCCCGATGCA
GCCTCCCGGGGGGGGCGGGAGCGGCTCTCAAGAGCAACTGATCATCGGAG
ATATGTTGGGGTCGACATCTAGCTTGTCTATGGGGCCAGGGGACACAGAT
GGCCTGTCTCCGTCGGTTAACAACACTCCGCAGGCGGCCGCAAGCGAGTG
GGTCGAGTATTATGACGTTAATCAAAACGCTTCCTATTGGAGCAACGGGA
CAACGTCGAAAAAGTACGAACATTATCTCCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGACGGATTCACTGCAGCAACAGCTCCCACCCTACCCGCAGCC
GTCGTCAAGCGGCGGCGGTGGCGGCGGTGGCGACGGTGGCCGGGGAGGAG
CAGCAGGCTTGGGTTTCATAGACTCCCTCCCCAACCCTCAGCAGCAGCAG
CATCAACATCACCAACAACAACAACAGCAGCAGGCAGCGGCTGCAGCGAG
CGGTCCGGGTTCGTCGACAATCTCCGATCTGAACAGTAACAACCCACCCC
TGAACGGCTGGAACCCAATACAACCAATATTTTCCAATGATCCTTTCTCC
CAGGGTTCTTCCAACACAGGCAACATCAATGTGAACATGAAGAGCGCCAC
GGAGGAAATTTCAGTGTCGGATGCCAACAGCCAGGGCTTCCCGATGCAGC
CTCCCGGGGGGGGCGGGAGCGGCTCTCAAGAGCAACTGATCATCGGAGAT
ATGTTGGGGTCGACATCTAGCTTGTCTATGGGGCCAGGGGACACAGATGG
CCTGTCTCCGTCGGTTAACAACACTCCGCAGGCGGCCGCAAGCGAGTGGG
TCGAGTATTATGACGTTAATCAAAACGCTTCCTATTGGAGCAACGGGACA
ACGTCGGTTTGGGTAAACCCGCACGCGGAGAAAGAAAAGCAGCAGCAGCA
ACAACAACAACAGCCCCTACACATACAGCAACAGCAACAGCATGCCCAGC
AGCAGCCCCAACAGCGACAGGGTGTAGTTTGGGGACAGCAATCGGTTCCG
GGAGATGGAGGGCAGCAAGCAGCCTGGAACATGCAACAGCACCAGCAGGA
CGGCCCGCCATCTTATCAAAGCAATGACAGTGTGGGCGGCGGCAGCGCGG
AGGGAGCGTCGACGTTTATGCTGTCCCCGGCCAACGTCTTGGGGCAGCAA
AGTTCAATCCCTCCCTTGGGTGGCGGGCAGCAAAACACACTCGGAAACCC
GCTTCAGCATGGAGAAGGGGTAGGGGCCAGGGGGAAATTAGGCGATTTTT
CTTCCGCTCGTGGAGGTGGTGTTGCTAGCGAGGAGAGGGTCGGAGTTAGC
GGGCGTGTTGGACAGCAATCAGATCTGCAGCAGCAACAGCAACAGCAACA
GCAACAGCAACAGCAACAGCAACAGCAACAGCAGCAGCTGCAGCAGCCGC
AGCCGCAGCCGCAGCAATTGCAAGGCCGGGGATGGGGAGACACCCCCCCG
CGTAGCAACAGCCAAGGAAACAGCGGTAGCTGTAGCCAAGCAGGCAACCC
TCCGGGTTTGTCATCGGCGTGGGAGAATGCTCCTGCTGGGGTAGCAGCAT
CTGGTCCACAGGGGAGCGCGTGGCAGCAGGATGGGAAGCTCCAGCAGCAT
ATTCAGGTTTGGGTAAACCCGCACGCGGAGAAAGAAAAGCAGCAGCAGCA
ACAACAACAACAGCCCCTACACATACAGCAACAGCAACAGCATGCCCAGC
AGCAGCCCCAACAGCGACAGGGTGTAGTTTGGGGACAGCAATCGGTTCCG
GGAGATGGAGGGCAGCAAGCAGCCTGGAACATGCAACAGCACCAGCAGGA
CGGCCCGCCATCTTATCAAAGCAATGACAGTGTGGGCGGCGGCAGCGCGG
AGGGAGCGTCGACGTTTATGCTGTCCCCGGCCAACGTCTTGGGGCAGCAA
AGTTCAATCCCTCCCTTGGGTGGCGGGCAGCAAAACACACTCGGAAACCC
GCTTCAGCATGGAGAAGGGGTAGGGGCCAGGGGGAAATTAGGCGATTTTT
CTTCCGCTCGTGGAGGTGGTGTTGCTAGCGAGGAGAGGGTCGGAGTTAGC
GGGCGTGTTGGACAGCAATCAGATCTGCAGCAGCAACAGCAACAGCAACA
GCAACAGCAACAGCAACAGCAACAGCAACAGCAGCAGCTGCAGCAGCCGC
AGCCGCAGCCGCAGCAATTGCAAGGCCGGGGATGGGGAGACACCCCCCCG
CGTAGCAACAGCCAAGGAAACAGCGGTAGCTGTAGCCAAGCAGGCAACCC
TCCGGGTTTGTCATCGGCGTGGGAGAATGCTCCTGCTGGGGTAGCAGCAT
CTGGTCCACAGGGGAGCGCGTGGCAGCAGGATGGGAAGCTCCAGCAGCAT
ATTCAGAAGCCTCAGCAGCGGACGCTGGGGCAGCCACCGAGAGGAGGGGG
AGTGCGTACCCCTGGGGGAGGGCTGGCGGATGATGGCGGATCCGGTGATA
CGTGGGGCTCGCCGTTGCATGACCAGCGGCAGCAGCAACATCACCAGTCA
CAGGGGAGAAGCCTCAGCAGCGGACGCTGGGGCAGCCACCGAGAGGAGGG
GGAGTGCGTACCCCTGGGGGAGGGCTGGCGGATGATGGCGGATCCGGTGA
TACGTGGGGCTCGCCGTTGCATGACCAGCGGCAGCAGCAACATCACCAGT
CACAGGGGAGCAGCAGCAGCAGCAGCAGCAGCACAACCGCCAACAACAAC
AGCAGCGAGCTCCAGCGGGTGAGGGAGACTTCCCGGCAGGTCCCGCCGGG
CGCGGCCCGGACCCAAGCCCAGGCGCTGCCCAAGCCCTACACGCCAAACA
AACACAAGTAGCAGCAGCAGCAGCAGCAGCAGCACAACCGCCAACAACAA
CAGCAGCGAGCTCCAGCGGGTGAGGGAGACTTCCCGGCAGGTCCCGCCGG
GCGCGGCCCGGACCCAAGCCCAGGCGCTGCCCAAGCCCTACACGCCAAAC
AAACACAAGTAG back to top
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