mRNA_H-paniculata_contig500.12231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig500.12231.1
Unique NamemRNA_H-paniculata_contig500.12231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig500.12231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig500contigH-paniculata_contig500:23902..28804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size239
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930472.3784742-CDS-H-paniculata_contig500:23901..240781622930472.3784742-CDS-H-paniculata_contig500:23901..24078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig500 23902..24078 +
1691481307.0197592-CDS-H-paniculata_contig500:23901..240781691481307.0197592-CDS-H-paniculata_contig500:23901..24078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig500 23902..24078 +
1622930472.3937645-CDS-H-paniculata_contig500:28742..288021622930472.3937645-CDS-H-paniculata_contig500:28742..28802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig500 28743..28802 +
1691481307.0403655-CDS-H-paniculata_contig500:28742..288021691481307.0403655-CDS-H-paniculata_contig500:28742..28802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig500 28743..28802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig500.12231.1prot_H-paniculata_contig500.12231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig500 23902..28802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig500.12231.1

>prot_H-paniculata_contig500.12231.1 ID=prot_H-paniculata_contig500.12231.1|Name=mRNA_H-paniculata_contig500.12231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
SRCIFGRGTGRGAVPISMSGSGSHGSGSGGGRKRNKKGGGGTNAANNNVA
GVNSSGGEQGDPRNGGGATSGQSSNTAGM
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mRNA from alignment at H-paniculata_contig500:23902..28804+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig500.12231.1 ID=mRNA_H-paniculata_contig500.12231.1|Name=mRNA_H-paniculata_contig500.12231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4903bp|location=Sequence derived from alignment at H-paniculata_contig500:23902..28804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCGGTGCATCTTTGGGAGAGGCACAGGCCGGGGGGCAGTGCCGATCAG
CATGTCTGGTTCAGGTAGCCATGGATCAGGATCCGGGGGTGGTCGAAAAC
GCAATAAAAAAGGTGGAGGTGGGACGAATGCTGCAAATAACAATGTGGCG
GGCGTCAACTCTAGTGGCGGAGAGCAGGTATGACTAGTATGACCTACATC
TATACTGATTCCGAGTGTCTGGTGTTCTGCTAAGCCTGTAGAGTTGACGA
TGTCAACACTTTTCAACGGTGTTTAGAGGGACTCAGAGCCTGCTGGTTAG
AAGTCGTCTTATCTTGTATGAAGCTATACAGGCAAGCTGTGCTTTAATTG
GATCGCTCAGTTTGTGGGTGCCTGAGAATCGGGGCAATGAACTTGGTAAA
AATATCCTGATTTTTTACCTGCTGTCGACCTTTGTGCACCATTTGCATGA
CAACCGAAAATGCGGTTGGGCTGTTGGGCTGTTGGGCTACCTTGCACTTG
GGCTCAATAAAAGACAACACACGTCGCCGAAAGATATTGCCAGTACCTTC
GTTGGCTTGTTTCATCCAGTAGACACCTACCGCTTATCTATTTAACCCAT
GCACTATGTGCATCATGTACCTAAGTATGCCCGGCAAAAGAAAAGTTGGA
GACGAGCAGGACAGACATTGAGTTGGCCCTTACGACAGGTAACAAACGGC
AAAATGCATCCTGACCAAGGCCAACTAAATACTGTCCGCTCTGTTTTTCT
GTGTGGGCGAGTAATTACACACATGAAGATAGGCAACGTGGTGCCTGCTC
GGCACGGCAGCCATGGGGGCTTCTTTCCTGTCACAACTGTGGCGGTACCT
TTTCTGCACTGCATTAATAGGTTCAAATCCACGTACACACTAATACCTAA
CTCATGCCGGCACCATTGATACTTCGTACTTGTAACATGAAAATCTCCAA
CTGTGCATGTTTTTTCAGAGCCACAAAGTCAAGTCTCCCCGAACTCTCTT
CGGGGTCCCTATTCACATGATGGGCTGGTCAAAGGTTGTTGATGCATCGT
TTCGCCTTGTCCTCTATTGGATAACAAAATACAATTTATACGTTCGGCTC
CTCAACGCATGTATGTATGCAAGCAGCATCGGGGTACTCGCTCTCACTCG
TCCGGCAGGCCTACAATCAAAGTATTGATAAAAGTATCATTGTACATAAT
TTCCCCTGTATGGTCCGTGTCGAGTATGTCAGTATAGTAGAGTACAGGCG
ACACTCAGCAGCACACAGACAGCAGTAGTGTTGCCGTTGTCGCCTAGCTC
ACTATACCATTGTCTTTATTTTTGTGTACTGTACACACTGCCAGTTTTTA
TTTAATACATGCCAGTAAATTTATCAAAAACGTCAGTTTTTCACTGTTTA
AAAACCAAGAGTGACATTGTGACGTGATTGGATTCATGAATCAAATAAGA
AAAGGTTTATGGGGATTCAACAACGGGACAATCTATCGATTGGTCGGTTC
TTCCGAGAATATACTGGAGGATTGCTTCCTGCGGTTTCGAAAGCCAGCCC
CCAGAAGACGGCGAAGTACGCCATACGGTGGCACTATCGCGCACCTCAGG
ATAATTGTAAGCGTCGATTGAACTGCGCGAGTACACCGCTGGTGTGTCCG
ATCGTGCCAATGGTTGCCAGATGTTTCCTGCGTTTAAATCCACGATCTCA
CTTCTTTTTTTTGAACAAGTCGTTAGACAGGACAGACACTGCCCACCTGT
GATAGTGTGTGATGCTTCTCTTGAACTCCTGCTAAGTCAAGTTGACCCTT
AAGACAGTAATAATATTATCAAATCACAAGGAAGGATCATGCATGGAGGG
TGTATTCATTTGAGCGGTAGGCCAACAAGCTGCATAAGCTGCGGGACTGA
TCTCCCACGCCCAAGTGCACCGCACGCTGCACGGACATAGATACTGATTG
CATAAGATTTTTCACCCGGCTACAGACAGCCTGGACGAAACTCGTTTCGA
ACGCTGTACAACTAGATTGTATGGATGTCAACAGTCAAGTAACTCACCCA
GAACGGCAGAGAAACAAATGAGATACGTTGATCGATATACCTCGTCGAGG
GACGCTACAGTTACCACCTATTTGCAGCTAGCTGATTGGTCAAAACTATG
GAATGAAGGAGTACGAAAAATTAAAAACAAGACAGGATCATCACTTGGAA
TTAAGTCGGGGTATAGTCAATCGTACAGACGAGCTGGGAGTATCGTTGGG
AATAAGTCTCCATGATTATTATTATTATTATTATTATGGGCAGCATCAAA
ACATCGCCAGTAAAACGCTAAAAGTATGCAATTTTTTTTTGCTGTGAGCA
AAGCACCCCTACACCTCCCTTGATCAATGACATTGGTACGCTCAATGAAA
GGAGTGTGTTTTTTGTTTTTATTTTTATGATACTGGAGCCACGCCAGCAG
TCAGTCATGTGCTACGTGGTGCACTCCGGTGTTGTGTCCTCGTCATCATG
CACACTGGCCCACTGCGCTCGCAAAGAATTTAGGCGCAATGTACGTAAAG
ATTCATTTCTTCTTTTCTTCTACCCCTACCCCACCGGACCCTGTAGAATC
CCTACACCATTCCTGCCTAAAAATAATGCCCTTCACGAATTTTTGAACAT
ACACACATCGACTCCGCGGAGGTAATGGGGTTGAGGCCGCGAGGTAGGTG
TTTCAGTCATACTCGTAGTGTTTTTCGTGGACCTCACCCCCCCACCTTTT
TCACGGCGGCTTCGCCGTGGGATTGTCAGGTCCCTTTACTTTATTTCTCG
GGCCCCGGTGCCATAGGGGTTAATTTAGTTGGATGGATTGTCGAAAAGCT
GTTCCGAAATGATGACCGCGTTCAGCGGTACACTAAATGGTAGGGCATTT
GTGATGTTGTCTTTGGTGTCTACGCCTATTTGGAGTACATTATGATGAAT
CCTATTTCAAGCTTGGAGAAGAGAACAGTGAATACAATGAACACAAATTA
TGATATAGCTGTCATGAACATATGGTGAAACATGGTTTTCGAGATGTATT
TGGTACCCCGTAATTTTTGGTCGTATGCCGAGCCGATGTACAGCTAGCCT
GCTTAGCTGGCAAGATGTTTTCCGGACTTGCGTTCGAATGGGTCACTGTA
CTTATCATGTACCCCTCTAACTAGATCTGTCGACAACATTGAGTTGACTC
CGCGTTGAGGACACAAGTGGTGCGCGAAACGAAGGAGCATTCTTAGCCTT
TGTTGACCTGGCTACTTGCATCTCGACAAGTTTTGACACGCGATTATTTA
GAGTCTCGCGTTGCAAAAGGGAAGGAGGGTGCTTCTTGGCACGGAGCGGG
GTACCGAACGTCGACGGACACAATCACGTTGGTCGGGGTGAGATCAGACT
CGTACGTCGACAGCATATGAAAAATAGTACAGCGGGATTGCGATATGTTT
TGGTTATATGTAAAATTTATAATAGCAGATGCTGATATCTATTGTAATTG
GTAGCTGTACGTCGGGATTCCTGGATTAAGGCTGTTTCTTCCTGTCAGTT
TTTTTTTTTTTTTTTTCCAGGTGTGAGGGGTTTAACGTCGAGAATCGTCC
TTAACGTCGAGGACGATAACTTGTGATCCCCGGGTCAAATGCCGGCGTGT
TTTGGACCAATCGACGCGTCTGGGTAAGAGCAACGTTCCCCCAACAAAAA
AATCAATAATCATGTAGTATTTTCCCTCCTATTACAAATTCGAGTTTTTT
TTCCTGTTTCAGTCCCATGGGATAACCTTGAAGGGAAACCCTCACTCCCA
CATTTTGCATATGGTGTCGGCGATCGTCAACATCGCAAGTTCGTTGGCCG
CTTCAAAGTCGGCTACTACTACTATTACTTCAATCGACTGGTCGAGGCAC
TCTTGTCCTTTTGTTGTAAATTAATATTCGTGCTGTACTTACTGTCTACA
GAGAAAGGTGTGAGGAACAATCGCTTCGCAGATTCTTGTTTTATTGAAGA
TCAACAACTGTCTCTTGGTAATCTCCAGCATGGACACATGCCAGCAACAT
ACATCACCTCCCCTAACCACCCTGCAGCTCCCAACAATCACTGACGAGGC
TCGCCTGCCTGTACTTCTTACCTACTCCAACTTGGCCTGTGCTCTGACCC
TTATCTGTGTATCTCGCACGTGGACAAATAAACAGTACGTGAAAGGGTGA
TATATTCATCAATTCATTGATTCATCCATTGATGAACACTACAGCACTCT
ATTCGTGTATCCATCCATCCGTTAATCAATCCATCTGTTTGGCCTCAAAC
CGTACGTGCTTGATCCATCGGCAGATGTCATTCTGCATTTCCTTACAGTC
AGCCAAGACACTGCAGTAGTAGTGCTGCGCATGTAGGCTCTCCTACTCAA
CCGTAAGTATGATCAATATTATATGCGGTACTATGAACCAAATAGGAAGT
GCGCTCTCAAGCCGCGGAAGTATCCTTAGTTGGTGCGTTCTTAAAGCGGG
CACGGCTGTATGGGCAATGAATCTCTGTGTTTGCTGCGCGCAAGCGCTGA
AGTACCCGGACTCCAGACAAGTCTAGGTTTTACATGATCGAAGCTCGTCT
GGAACTGGTCGTCTTATGCTGCGGTCACGGCCGCGTTTTCGCGACACACG
AAGCAAGAACGAGGTAAGTAGGTACGACTCTCGTGGAGGTTTTGGATGTT
GTCTAATAGCATGGCAATGTTCTATTTGTTCGATGACACCACTCAGGCCG
TGAAGAGCATCATCCATTCTCGACGTGCCATGGATCGATCGTACCACAAT
ATTTAAATATGTGTCGTGTGCCAATTTACGCTATGTAGCAGGGCGACCCA
CGAAATGGCGGCGGCGCAACGAGCGGCCAGAGTAGCAACACCGCCGGAAT
GAA
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Coding sequence (CDS) from alignment at H-paniculata_contig500:23902..28804+

>mRNA_H-paniculata_contig500.12231.1 ID=mRNA_H-paniculata_contig500.12231.1|Name=mRNA_H-paniculata_contig500.12231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig500:23902..28804+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCGGTGCATCTTTGGGAGAGGCACAGGCCGGGGGGCAGTGCCGATCAG
CATGTCTGGTTCAGGTAGCCATGGATCAGGATCCGGGGGTGGTCGAAAAC
GCAATAAAAAAGGTGGAGGTGGGACGAATGCTGCAAATAACAATGTGGCG
GGCGTCAACTCTAGTGGCGGAGAGCAGTCGCGGTGCATCTTTGGGAGAGG
CACAGGCCGGGGGGCAGTGCCGATCAGCATGTCTGGTTCAGGTAGCCATG
GATCAGGATCCGGGGGTGGTCGAAAACGCAATAAAAAAGGTGGAGGTGGG
ACGAATGCTGCAAATAACAATGTGGCGGGCGTCAACTCTAGTGGCGGAGA
GCAGGGCGACCCACGAAATGGCGGCGGCGCAACGAGCGGCCAGAGTAGCA
ACACCGCCGGAATGGGCGACCCACGAAATGGCGGCGGCGCAACGAGCGGC
CAGAGTAGCAACACCGCCGGAATG
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