mRNA_H-paniculata_contig50.12228.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE) HSP 1 Score: 177 bits (450), Expect = 2.440e-48 Identity = 92/166 (55.42%), Postives = 114/166 (68.67%), Query Frame = 1
Query: 13 DFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVINTF 453
DF I YK+GGF L FSD+NW +NPDN +STSSY+ M+ANAPMSF+ G QG+TA STMEAELV +AL MK AV+CS+MM ELGFG F +PV+ D+ LRFFF ELV EGKI+I+Y TED +A IGTKH +K R ++L++ IN F
Sbjct: 45 DFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNF 210
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 181 bits (460), Expect = 3.190e-47 Identity = 93/166 (56.02%), Postives = 115/166 (69.28%), Query Frame = 1
Query: 13 DFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVINTF 453
DF I YK+GGF L FSD+NW +NPDN +STSSY+ M+ANAPMSF+ G QG+TA STMEAELV +AL MK AV+CS+MM ELGFG F +PV+ D+ LRFFF ELV EGKI+I+Y TED +ADIGTKH +K R +L+++IN F
Sbjct: 270 DFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 182 bits (463), Expect = 4.080e-45 Identity = 92/166 (55.42%), Postives = 117/166 (70.48%), Query Frame = 1
Query: 13 DFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVINTF 453
DF I YK+GGF L FSD+NW +NPDN +STSSY+ M+ANAPMSF+ G QG+TA STMEAELV +AL MK AV+CS+MM ELGFG F +PV+ D+ LRFFF ELV EGKI+I+Y++TED +ADIGTKH + R ++L+++IN F
Sbjct: 830 DFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 178 bits (451), Expect = 2.000e-44 Identity = 91/164 (55.49%), Postives = 115/164 (70.12%), Query Frame = 1
Query: 13 DFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVIN 447
DF I YK+GGF L FSD+NW +NPDN +STSSY+ M+ANAPMSF+ G QG+TA STMEAELV +AL MK AV+CS+MM ELG G F +PV+ D+ LRFFF ELV EGKI+I+Y+ TED +ADIGTKH +K R ++L+++IN
Sbjct: 491 DFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLIN 654
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.940e-43 Identity = 89/166 (53.61%), Postives = 119/166 (71.69%), Query Frame = 1
Query: 1 SDNADFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVI 444
S + DF I YKRGGF LTA SDANWG+NPDN +S SSYI+MM+ AP+SFK G Q +TA ST+EAELV AAL MK ++C++MM ELGFG+ F S P+++++ LRFF+ E+V+EG+I+I+YI TED +ADIGTKH++K RH+ L++ I
Sbjct: 520 SGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYINTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKI 685
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 176 bits (445), Expect = 1.240e-42 Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 1
Query: 13 DFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVINTF 453
DF I YK+GGF L FSD+NW +NPDN +STSSY+ ++ANAPMSF+ G QG+TA STMEAELV +AL M AV+ S+MM ELGFG F +PV+ D+ LRFFF ELV EGKI+I+Y+ TED +ADIGTKH +K R ++L+++IN F
Sbjct: 1499 DFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 166 bits (420), Expect = 7.050e-40 Identity = 86/170 (50.59%), Postives = 117/170 (68.82%), Query Frame = 1
Query: 1 SDNADFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVINTF 453
S + DF I YKRGGF LTA S+AN G N DN +S SSYI+MM+ AP S K G Q +TA ST+EAELV +AL MK ++C++MM ELGFG+ F+S P+F+DS LRFF+ ++V+EG+I+I+YI TED +ADIGT++++K RH+YL++ I F
Sbjct: 607 SGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE) HSP 1 Score: 160 bits (405), Expect = 2.680e-38 Identity = 87/148 (58.78%), Postives = 104/148 (70.27%), Query Frame = 1
Query: 16 FDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDS--ILRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVINTF 453
F I YKRGGF LT FSDANWG+NPDN +STSSY+I+M+ AP SFK G Q + A STM AELV AALTMK V CS+MM E+G G F VP +RFF+ ELV+EG ITI+Y+ T+ Q+ADIGTK +SK R LL +I F
Sbjct: 504 FCITYKRGGFKLTTFSDANWGNNPDNAKSTSSYMIVMSKAPESFKTGLQSLRAVSTMMAELVAAALTMKEVVVCSNMMTEIGSGQQFGQVPFSRTKHIAIRFFYLRELVKEGAITIHYVSTDRQLADIGTKFLSKHCLRLLLNLIKNF 651
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE) HSP 1 Score: 160 bits (405), Expect = 5.370e-38 Identity = 83/165 (50.30%), Postives = 109/165 (66.06%), Query Frame = 1
Query: 16 FDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKHVSKPRHRYLLEVINTF 453
F I YKRGGF LTAF+D+NWG+NPDN +STSS++ M+ +APM+FK G Q +T QSTME ELV AAL +K AV+CS+++ ELGFG VP++ D+ LRFFF ELV EG+I I+Y+ + ADIGTKH++K R + LL +I F
Sbjct: 554 FKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNF 718
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE) HSP 1 Score: 150 bits (380), Expect = 1.150e-37 Identity = 92/243 (37.86%), Postives = 118/243 (48.56%), Query Frame = 1
Query: 13 DFDIVYKRGGFTLTAFSDANWGDNPDNDRSTSSYIIMMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGATFNSVPVFVDSI-----------------------------------------------------------------------------------------------LRFFFSNELVEEGKITIYYIKTEDQIADIGTKH-VSKPRHRYLLEVINTF 453
DF I YK+GGF L FSD+NW +NPDN +STSSY+ M+ANAPMSF+ G QG+TA STMEAELV +AL MK AV+CS+MM ELGFG F +PV+ D+ LRFFF ELV EGKI+I+Y+ TED +ADIGTKH ++K R ++L++++N F
Sbjct: 16 DFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNF 258 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50.12228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50.12228.1 >prot_H-paniculata_contig50.12228.1 ID=prot_H-paniculata_contig50.12228.1|Name=mRNA_H-paniculata_contig50.12228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp MMANAPMSFKVGQQGITAQSTMEAELVEAALTMKAAVYCSSMMMELGFGAback to top mRNA from alignment at H-paniculata_contig50:58788..60668+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50.12228.1 ID=mRNA_H-paniculata_contig50.12228.1|Name=mRNA_H-paniculata_contig50.12228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1881bp|location=Sequence derived from alignment at H-paniculata_contig50:58788..60668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50:58788..60668+ >mRNA_H-paniculata_contig50.12228.1 ID=mRNA_H-paniculata_contig50.12228.1|Name=mRNA_H-paniculata_contig50.12228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig50:58788..60668+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |