mRNA_H-paniculata_contig50.12226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig50.12226.1 vs. uniprot
Match: D7FUD5_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD5_ECTSI) HSP 1 Score: 166 bits (421), Expect = 4.190e-39 Identity = 232/396 (58.59%), Postives = 260/396 (65.66%), Query Frame = 1
Query: 250 ERVVMAAQAGDSLTIQAFLAAGGDVETRDSRMGMTLLAWASRRGHVETIELLIGKGAAVMAGDGRMRTPLHRACSGCFSDVAKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEELARXXXXXXXXXXXXXXXXXXXXXXXXXNAKTVNGNXXXXXXXXXXXXXXXXXXXXXXXXXXVTNEAGTAPAEVAAPWVEDSVKAELKKLLT---EASAVKNDQAAAVRPKPTIIRPRPPGASEAEVGLIEAIRSGRAGGGKDFSYHPECPSSCSTTT--------ALGTHSNQGTLSGSSHGFLKAGAASAAHRCRSTPGEGGLPGGERWSMEPPFG-------AERTRSRKGLGRDRKMAFEEVSRSRGHHQEHQGGHCCVVQ 1383
+R + AAQ GD I+AFL GGD+E RDS GMTLLAWASRRGH E LL+ +GA+ A DGR RTPLHRACSGC DV K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +ELARXXXXXXXXXXXXXXXXXXXXXXXXX AKTV GNXXXXXXXXXXXXXXXXXXXXXXXXXX AEVAAPWVEDSVKA +++LL + S +D + RP P ++RPRP GA+E E GL+E IRS R + PEC T +G S GT SS G +AHR R+ PGEGGLPG + G R RKG+G+ RK S+ ++GG CC VQ
Sbjct: 288 DRAIEAAQGGDLAAIKAFLDRGGDIELRDSLGGMTLLAWASRRGHTELARLLLSRGASATARDGRDRTPLHRACSGCNPDVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXXAKTVAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVAAPWVEDSVKASMQELLAPRRQPSKEGSDATSHTRPTPAVVRPRPKGAAEEEAGLMEFIRSQR----NSMAECPECQQDMLRQTHAFNSDGVPIGLSSAHGTYRISSAGSPGKVKMCSAHRARAQPGEGGLPGLDEGFQRGLLGDAMLGEGMSEFRPRKGMGKSRKKQLSSKSK-------YEGG-CCSVQ 671
BLAST of mRNA_H-paniculata_contig50.12226.1 vs. uniprot
Match: A0A6H5KJE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJE3_9PHAE) HSP 1 Score: 163 bits (413), Expect = 1.510e-37 Identity = 233/399 (58.40%), Postives = 268/399 (67.17%), Query Frame = 1
Query: 250 ERVVMAAQAGDSLTIQAFLAAGGDVETRDSRMGMTLLAWASRRGHVETIELLIGKGAAVMAGDGRMRTPLHRACSGCFSDVAKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEELARXXXXXXXXXXXXXXXXXXXXXXXXXNAKTVNGNXXXXXXXXXXXXXXXXXXXXXXXXXXVTNEAGTAPAEVAAPWVEDSVKAELKKLL---TEASAVKNDQAAAVRPKPTIIRPRPPGASEAEVGLIEAIRSGRAGGGKDFSYHPECP--------SSCSTTTALGTHSNQGTL---SGSSHGFLKAGAASAAHRCRSTPGEGGLPG----GERWSMEPPF---GAERTRSRKGLGRDRKMAFEEVSRSRGHHQEHQGGHCCVVQ 1383
+R + AAQ GD ++AFL GGD+E RDS GMTLLAWASRRGH E LL+ +GA+ A DGR RTPLHRACSGC DV K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +ELARXXXXXXXXXXXXXXXXXXXXXXXXX AKTV GNXXXXXXXXXXXXXXXXXXXXXXXXXX AEVAAPWVEDSVKA +++LL ++ S +D + RP P ++RPRP GA+E E GL+E IRS R + PEC +S S +G S GT S S G +K +AHR R+ PG+GGLPG +R ++ G R RKG+G+ RK S+ ++GG CC VQ
Sbjct: 460 DRAIEAAQGGDLAAMKAFLDGGGDIELRDSLGGMTLLAWASRRGHTELARLLLSRGASATARDGRDRTPLHRACSGCNPDVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELARXXXXXXXXXXXXXXXXXXXXXXXXXXAKTVAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEVAAPWVEDSVKASMQELLAPRSQPSEEGSDCTSHTRPTPAVVRPRPKGAAEEEAGLMEFIRSQR----NSVAECPECQRDMLRQTHASNSNGVPIGVSSAHGTYRISSSRSPGKVKM---CSAHRARAQPGKGGLPGLDDGFQRGALGDAMLGEGMSEFRPRKGMGKSRKKQLSAKSK-------YEGG-CCSVQ 843 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig50.12226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig50.12226.1 >prot_H-paniculata_contig50.12226.1 ID=prot_H-paniculata_contig50.12226.1|Name=mRNA_H-paniculata_contig50.12226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=375bp MAAQAGDSLTIQAFLAAGGDVETRDSRMGMTLLAWASRRGHVETIELLIGback to top mRNA from alignment at H-paniculata_contig50:26196..52992+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig50.12226.1 ID=mRNA_H-paniculata_contig50.12226.1|Name=mRNA_H-paniculata_contig50.12226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=26797bp|location=Sequence derived from alignment at H-paniculata_contig50:26196..52992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig50:26196..52992+ >mRNA_H-paniculata_contig50.12226.1 ID=mRNA_H-paniculata_contig50.12226.1|Name=mRNA_H-paniculata_contig50.12226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2250bp|location=Sequence derived from alignment at H-paniculata_contig50:26196..52992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |