prot_H-paniculata_contig5.12222.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5.12222.1
Unique Nameprot_H-paniculata_contig5.12222.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length838
Homology
BLAST of mRNA_H-paniculata_contig5.12222.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI)

HSP 1 Score: 560 bits (1442), Expect = 2.300e-186
Identity = 340/704 (48.30%), Postives = 427/704 (60.65%), Query Frame = 0
Query:  130 SGGQSSVLIAVLQQALKACPALPGTAVERSVEDCLRHPSP-SATWSLSAVPMFVRDVLSLVTHSPRALGPSVIPLLLRFVSETCCQLGSDLGSKVNAAGAVGESPRQGSPCLSCVAAGAPIDPACDADANETPR-----CEAQERRDLVLEALFRWVVDAHFRRCSRLLQVSLHRAVCDGVQQVMEAAAGANLSTSHYCFPLACKLLLAFVGGVAGDGGVQVAMFLQHRCRDELRHFLTRVTGSSRSGSATGCAVMPANATVGE-------EFPVLQAYMGHLCLCRHISDATVGVHLLWLTRQALAIFRFVDAPGKELGETSASSGKTPSHPNAMVALSSLCHSIALLLTRPKRGKDTGSAVVLNGVGNLLEIIFDSDVHPLSAVPRPLAAAAVGVLQDIGHLQLVRLEGLLGPCPDRSLQRRRVNDEAGRRALDVGGFSGQAGVGSKFSRYSVFGHVDFVRAPVAFQKSWGLVETGVEKILPSPRLSSEMKRAIADECWSDTEGSFPDSAEFNDDHADEGRSME-NDWERVPDEVALRVFSFLTPKRVCRLACVERAWRDLLQVSRVWRPLFEARWPLRMLKSDEELTEVSATLLKVPAEAGPKHKRQRVARARVSPVYHLEVLEDLH-DTLPIL--DWMGLYRDRHKAERAARWRCAAKTQFPWRVCPFLGCITSLKSEFAVKRHMEVHKRPQPKRCLTKR 816
            + G    L++ LQ AL ACPA+P   +E S+EDCLR PSP +A W+  +  MFV  VLSLV+ SPR+L  +V+ +L+RFV+   C    D    ++A G   +  R+ S CLSC  A +  D A   DA+ET R     C AQE+RDLVLE++ RW VD HFR+CSRLLQ S++RAVC GV+Q + AA  +    S   FPL C+LLL+FVGG+AGDGG Q+A FL+ RC  E+R FLTR      SG+A G     A    G        E P+L AY+GHLCLCRH+SD     HL+WL RQALA+ R +D P +    T+A+  +  +  N    L+SL H++ALLLTRPKRG    S++V   VGNLLEI+FDSD  PLS VPRPLA AA+ VL++ GHLQL R + LL   P  S  RR   + AGRR        G           S    +DF RA +AF+ SW L   GV+  LPS   S   +R                     D   D  R++  N W RVPDEV LRVFSF+TPKRVCRLACV+RAWR+LL VS VWRP FEARWPL  + SD +L  VS  LL     +  K+ ++R    ++  V H    ED      P+L  DWM LYRDRH+AERAAR R AAKT+FPW VCPFLGC++SLKSEFAVKRH+  HKRP+ KR + K+
Sbjct:   11 TNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGAAVWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGCDTLDD-SLALDAEGEETQDRRRRSRCLSCSTALS--DNAAGTDASETERARPQCCNAQEKRDLVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSRRQASPPSFPLGCRLLLSFVGGLAGDGGAQIAGFLRERCGAEMRRFLTRGRWRPPSGTARGRRHADAWTATGRGVARRQPELPMLDAYVGHLCLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERRQNS-NFEAVLASLSHALALLLTRPKRG-GVCSSIVPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLR-LPWGS--RRGEPNAAGRREESK---LGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLLAEGLGSARKNAKRRRRHGKIG-VVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKRLMGKK 702          
BLAST of mRNA_H-paniculata_contig5.12222.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 3.940e-119
Identity = 241/529 (45.56%), Postives = 300/529 (56.71%), Query Frame = 0
Query:  223 VNAAGAVGESPRQGSPCLSCVAAGAPIDPACDADANETPR---CEAQERRDLVLEALFRWVVDAHFRRCSRLLQVSLHRAVCDGVQQVMEAAAGANLSTSHYCFPLACKLLLAFVGGVAGDGGVQVAMFLQHRCRDELRHFLTRVTGSSRSGS-----------ATGCAVMPANATVGEEFPVLQAYMGHLCLCRHISDATVGVHLLWLTRQALAIFRFVDAPGKELGETSASSGKTPSHPNAMVALSSLCHSIALLLTRPKRGKDTGSAVVLNGVGNLLEIIFDSDVHPLSAVPRPLAAAAVGVLQDIGHLQLVRLEGLLGPCPDRSLQRRRVNDEAGRRALDVGGFSGQAGVGSKFSRYSVFGHVDFVRAPVAFQKSWGLVETGVEKILPSPRLSSEMKRAIADECWSDTEGSFPDSAEFNDDHAD-EGRSMENDWERVPDEVALRVFSFLTPKRVCRLACVERAWRDLLQVSRVWRPLFEARWPLRMLKSDEELTEVSATLLKVPAEAGPKHKRQRVARARVSPVY 736
            + A G   +  R+ S CLSC AA +      DA   E  R   C AQE+RD+VLE++ RW VD HFR+CSRLLQ S++RAVC GV+Q + AA  +    S   FP  C+LLL+FVGG+AGDGG Q+A FL+ RC  ELR FL R      SG+           ATG AV    A    E P+L AY+GHLCLCRH+SD     HL WL RQAL + R +D P +   ET+A++ +  S  N    L+SL H++ALLLTRPKRG    S+ V    GNLLEI+FDSD  PLS VPRPLA AA+ VL++ GH+QL R + LL P P  S  RR   + AGRR        G           S    +DF RA +AF+ +W L   GV+  LPS   S   +R       S             D   D  G    N W RVPDEV +RV SF+TPKRVCRLACV+RAWR+LL VS VWRP FEARWPL  + SD +L  VS  LL     +  K  ++R    ++  V+
Sbjct:   38 LEAEGEEAQGTRRRSRCLSCSAALSDNPAGTDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSMRQASPPSFPPGCRLLLSFVGGLAGDGGAQIAGFLRERCGAELRRFLARGRWRPPSGTCRGRRHADTCTATGGAVAGRQA----ESPMLDAYVGHLCLCRHVSDPLAATHLAWLARQALTVLRMLDMPEEGAHETTAAAERRQSS-NFADVLASLSHALALLLTRPKRG-GLCSSTVPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRP-PRGS--RRGEPNAAGRRTKSK---LGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLLAEGLGSARKKAKRRRRHGKIGVVH 554          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5.12222.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQS3_ECTSI2.300e-18648.30F-box, zinc finger protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JX00_9PHAE3.940e-11945.56F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 645..686
e-value: 5.5E-4
score: 19.7
IPR001810F-box domainPROSITEPS50181FBOXcoord: 642..688
score: 11.273
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 782..804
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 642..763

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5contigH-paniculata_contig5:74293..82084 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5.12222.1mRNA_H-paniculata_contig5.12222.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5 74264..82666 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5.12222.1 ID=prot_H-paniculata_contig5.12222.1|Name=mRNA_H-paniculata_contig5.12222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=838bp
MRKDNGWEHLGELSRLLQVFRSIYLHSNAEDDDNAIVEWRSDVRLFFMRL
LSSRAENEGVWIRFRFDPFCLVLTHSCCDWSSSDAFGCGLMSEVAGLLME
VQSELPVCTPAIVHVLLHRLATLRPGKEVSGGQSSVLIAVLQQALKACPA
LPGTAVERSVEDCLRHPSPSATWSLSAVPMFVRDVLSLVTHSPRALGPSV
IPLLLRFVSETCCQLGSDLGSKVNAAGAVGESPRQGSPCLSCVAAGAPID
PACDADANETPRCEAQERRDLVLEALFRWVVDAHFRRCSRLLQVSLHRAV
CDGVQQVMEAAAGANLSTSHYCFPLACKLLLAFVGGVAGDGGVQVAMFLQ
HRCRDELRHFLTRVTGSSRSGSATGCAVMPANATVGEEFPVLQAYMGHLC
LCRHISDATVGVHLLWLTRQALAIFRFVDAPGKELGETSASSGKTPSHPN
AMVALSSLCHSIALLLTRPKRGKDTGSAVVLNGVGNLLEIIFDSDVHPLS
AVPRPLAAAAVGVLQDIGHLQLVRLEGLLGPCPDRSLQRRRVNDEAGRRA
LDVGGFSGQAGVGSKFSRYSVFGHVDFVRAPVAFQKSWGLVETGVEKILP
SPRLSSEMKRAIADECWSDTEGSFPDSAEFNDDHADEGRSMENDWERVPD
EVALRVFSFLTPKRVCRLACVERAWRDLLQVSRVWRPLFEARWPLRMLKS
DEELTEVSATLLKVPAEAGPKHKRQRVARARVSPVYHLEVLEDLHDTLPI
LDWMGLYRDRHKAERAARWRCAAKTQFPWRVCPFLGCITSLKSEFAVKRH
MEVHKRPQPKRCLTKRAPTGKRAGEATAAIGRRPKTK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR013087Znf_C2H2_type
IPR036047F-box-like_dom_sf