mRNA_H-paniculata_contig5.12222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5.12222.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI) HSP 1 Score: 560 bits (1442), Expect = 9.870e-184 Identity = 340/704 (48.30%), Postives = 427/704 (60.65%), Query Frame = 3
Query: 417 SGGQSSVLIAVLQQALKACPALPGTAVERSVEDCLRHPSP-SATWSLSAVPMFVRDVLSLVTHSPRALGPSVIPLLLRFVSETCCQLGSDLGSKVNAAGAVGESPRQGSPCLSCVAAGAPIDPACDADANETPR-----CEAQERRDLVLEALFRWVVDAHFRRCSRLLQVSLHRAVCDGVQQVMEAAAGANLSTSHYCFPLACKLLLAFVGGVAGDGGVQVAMFLQHRCRDELRHFLTRVTGSSRSGSATGCAVMPANATVGE-------EFPVLQAYMGHLCLCRHISDATVGVHLLWLTRQALAIFRFVDAPGKELGETSASSGKTPSHPNAMVALSSLCHSIALLLTRPKRGKDTGSAVVLNGVGNLLEIIFDSDVHPLSAVPRPLAAAAVGVLQDIGHLQLVRLEGLLGPCPDRSLQRRRVNDEAGRRALDVGGFSGQAGVGSKFSRYSVFGHVDFVRAPVAFQKSWGLVETGVEKILPSPRLSSEMKRAIADECWSDTEGSFPDSAEFNDDHADEGRSME-NDWERVPDEVALRVFSFLTPKRVCRLACVERAWRDLLQVSRVWRPLFEARWPLRMLKSDEELTEVSATLLKVPAEAGPKHKRQRVARARVSPVYHLEVLEDLH-DTLPIL--DWMGLYRDRHKAERAARWRCAAKTQFPWRVCPFLGCITSLKSEFAVKRHMEVHKRPQPKRCLTKR 2477
+ G L++ LQ AL ACPA+P +E S+EDCLR PSP +A W+ + MFV VLSLV+ SPR+L +V+ +L+RFV+ C D ++A G + R+ S CLSC A + D A DA+ET R C AQE+RDLVLE++ RW VD HFR+CSRLLQ S++RAVC GV+Q + AA + S FPL C+LLL+FVGG+AGDGG Q+A FL+ RC E+R FLTR SG+A G A G E P+L AY+GHLCLCRH+SD HL+WL RQALA+ R +D P + T+A+ + + N L+SL H++ALLLTRPKRG S++V VGNLLEI+FDSD PLS VPRPLA AA+ VL++ GHLQL R + LL P S RR + AGRR G S +DF RA +AF+ SW L GV+ LPS S +R D D R++ N W RVPDEV LRVFSF+TPKRVCRLACV+RAWR+LL VS VWRP FEARWPL + SD +L VS LL + K+ ++R ++ V H ED P+L DWM LYRDRH+AERAAR R AAKT+FPW VCPFLGC++SLKSEFAVKRH+ HKRP+ KR + K+
Sbjct: 11 TNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGAAVWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGCDTLDD-SLALDAEGEETQDRRRRSRCLSCSTALS--DNAAGTDASETERARPQCCNAQEKRDLVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSRRQASPPSFPLGCRLLLSFVGGLAGDGGAQIAGFLRERCGAEMRRFLTRGRWRPPSGTARGRRHADAWTATGRGVARRQPELPMLDAYVGHLCLCRHVSDPLSATHLVWLARQALAVLRMLDMPEEGAPGTTAAPERRQNS-NFEAVLASLSHALALLLTRPKRG-GVCSSIVPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLR-LPWGS--RRGEPNAAGRREESK---LGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLLAEGLGSARKNAKRRRRHGKIG-VVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKRLMGKK 702
BLAST of mRNA_H-paniculata_contig5.12222.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE) HSP 1 Score: 381 bits (979), Expect = 4.170e-117 Identity = 241/529 (45.56%), Postives = 300/529 (56.71%), Query Frame = 3
Query: 696 VNAAGAVGESPRQGSPCLSCVAAGAPIDPACDADANETPR---CEAQERRDLVLEALFRWVVDAHFRRCSRLLQVSLHRAVCDGVQQVMEAAAGANLSTSHYCFPLACKLLLAFVGGVAGDGGVQVAMFLQHRCRDELRHFLTRVTGSSRSGS-----------ATGCAVMPANATVGEEFPVLQAYMGHLCLCRHISDATVGVHLLWLTRQALAIFRFVDAPGKELGETSASSGKTPSHPNAMVALSSLCHSIALLLTRPKRGKDTGSAVVLNGVGNLLEIIFDSDVHPLSAVPRPLAAAAVGVLQDIGHLQLVRLEGLLGPCPDRSLQRRRVNDEAGRRALDVGGFSGQAGVGSKFSRYSVFGHVDFVRAPVAFQKSWGLVETGVEKILPSPRLSSEMKRAIADECWSDTEGSFPDSAEFNDDHAD-EGRSMENDWERVPDEVALRVFSFLTPKRVCRLACVERAWRDLLQVSRVWRPLFEARWPLRMLKSDEELTEVSATLLKVPAEAGPKHKRQRVARARVSPVY 2237
+ A G + R+ S CLSC AA + DA E R C AQE+RD+VLE++ RW VD HFR+CSRLLQ S++RAVC GV+Q + AA + S FP C+LLL+FVGG+AGDGG Q+A FL+ RC ELR FL R SG+ ATG AV A E P+L AY+GHLCLCRH+SD HL WL RQAL + R +D P + ET+A++ + S N L+SL H++ALLLTRPKRG S+ V GNLLEI+FDSD PLS VPRPLA AA+ VL++ GH+QL R + LL P P S RR + AGRR G S +DF RA +AF+ +W L GV+ LPS S +R S D D G N W RVPDEV +RV SF+TPKRVCRLACV+RAWR+LL VS VWRP FEARWPL + SD +L VS LL + K ++R ++ V+
Sbjct: 38 LEAEGEEAQGTRRRSRCLSCSAALSDNPAGTDASETEGARPQCCSAQEKRDVVLESMLRWAVDVHFRQCSRLLQASVNRAVCHGVRQALVAAELSMRQASPPSFPPGCRLLLSFVGGLAGDGGAQIAGFLRERCGAELRRFLARGRWRPPSGTCRGRRHADTCTATGGAVAGRQA----ESPMLDAYVGHLCLCRHVSDPLAATHLAWLARQALTVLRMLDMPEEGAHETTAAAERRQSS-NFADVLASLSHALALLLTRPKRG-GLCSSTVPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRP-PRGS--RRGEPNAAGRRTKSK---LGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLLAEGLGSARKKAKRRRRHGKIGVVH 554 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5.12222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5.12222.1 >prot_H-paniculata_contig5.12222.1 ID=prot_H-paniculata_contig5.12222.1|Name=mRNA_H-paniculata_contig5.12222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=838bp MRKDNGWEHLGELSRLLQVFRSIYLHSNAEDDDNAIVEWRSDVRLFFMRLback to top mRNA from alignment at H-paniculata_contig5:74264..82666+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5.12222.1 ID=mRNA_H-paniculata_contig5.12222.1|Name=mRNA_H-paniculata_contig5.12222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8403bp|location=Sequence derived from alignment at H-paniculata_contig5:74264..82666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5:74264..82666+ >mRNA_H-paniculata_contig5.12222.1 ID=mRNA_H-paniculata_contig5.12222.1|Name=mRNA_H-paniculata_contig5.12222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5028bp|location=Sequence derived from alignment at H-paniculata_contig5:74264..82666+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |