mRNA_H-paniculata_contig11907.1222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11907.1222.1
Unique NamemRNA_H-paniculata_contig11907.1222.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A6H5JX72_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX72_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 3.370e-94
Identity = 190/336 (56.55%), Postives = 222/336 (66.07%), Query Frame = 1
Query:   58 PRELVEREKERWGTGTARATERGLVDGKKEK------AATKARGGRSGKARGKKNDRGAGPMILRWRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDARTKKDVEPRFSYTVDVRLERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGM-PIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSS------------------AAXXXXGAASVVIVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVRKAC 990
            PRE +ERE+ERWG GTARA ERG VD +  K      +ATK  G R  +A+G   DRG GPM+L WRMFN+++ +  DPGKD  GVS  LLAVV  +LGI + E  +  TDVV+VRKSFDARTKKD EPRFSYT+DVRL    A+KLRLR K+     GKLEPSP  GP+FP S + D S+ + + P +  TSA  +   A S ++P  +                                     G  SVVIVGAGPAGLFAALELVE G+KPIIVERGMPVERRGR IGALF R IL+P+SNLCYGEGGAGTWSDGKLTTRIGRNS+NVRK C
Sbjct:   74 PREFIERERERWGHGTARAVERG-VDNRSRKGGGRGGSATKKSGPRRPRAKG---DRGRGPMVLCWRMFNMELGVKVDPGKDFCGVSAELLAVVAGRLGI-KDEGVLADTDVVVVRKSFDARTKKDAEPRFSYTLDVRLSPKTARKLRLRTKQ-----GKLEPSPSGGPLFPASPSSDASVFSDISPDI--TSAAVSKMAALSDATPAAVAAXXXXXXXXXXXXXXXXXXXXXXXAGAPPLVTGRGGGGPSVVIVGAGPAGLFAALELVEVGMKPIIVERGMPVERRGREIGALFHRRILNPDSNLCYGEGGAGTWSDGKLTTRIGRNSDNVRKVC 397          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 3.700e-84
Identity = 177/331 (53.47%), Postives = 203/331 (61.33%), Query Frame = 1
Query:   28 RSSGYRSDRPPRELVEREKERWGTGTARATERGLVD-----GKKEKAATKARGGRSGKARGKKNDRGAGPMILRWRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDARTKKDVEPRFSYTVDVRLERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVRKACIVLCA 1005
            RS    +  PPREL+ERE+ERWG GTARA ERG+ +     G +  +ATK  G R  +A   K DRG GPM+L WRM+N+++ +  DPGKD  GVS  LLAVV  +LGI + E  +  TDVV+ RKSFDARTKKD EPRFSYT+DVRL    A+KLRLR K+                        D+    G P VAT                                   XXX    VV+VGAGPAGLFAALELVE G+KPIIVERGMPVERRGR IGALF R IL+P+SNLCYGEGGAGTWSDGKLTTRIGRNSENVRK    L A
Sbjct:    7 RSGTTSTPSPPRELIERERERWGHGTARAVERGMDNRSRKGGGRGGSATKKSGARRPRA---KADRGRGPMVLCWRMYNVELGVKVDPGKDFCGVSAELLAVVAGRLGI-KDEGMLADTDVVVARKSFDARTKKDAEPRFSYTLDVRLSPKTARKLRLRTKQG-----------------------DVMEGAGAPPVAT----------------------------------GXXXXXXXVVVVGAGPAGLFAALELVEVGMKPIIVERGMPVERRGREIGALFHRRILNPDSNLCYGEGGAGTWSDGKLTTRIGRNSENVRKVLETLVA 276          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A836CLD3_9STRA (DAO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLD3_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.890e-53
Identity = 119/250 (47.60%), Postives = 150/250 (60.00%), Query Frame = 1
Query:  223 MILRWRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDARTKKDVEPRFSYTVDVRLERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPES-NLCYGEGGAGTWSDGKLTTRIGRNS 969
            M  R  +FNL++P+S DPGKDD G+ D +L+ ++ +LG++    ++   DV IVRKSFD R KKD EP+F YTVDVR++R  A KL+LR+KE     G++EP+           A                 +A +ST                              A  V++VG+GPAGLFAAL L +AG KPII+ERG PVE RGR IGALFAR IL+ ES NLCYGEGGAGTWSDGKLTTRIG+NS
Sbjct:    1 MKQRLELFNLEVPLSRDPGKDDIGIHDAVLSAISTRLGMRPDMPSLLSADVSIVRKSFDGRWKKDGEPKFVYTVDVRVDRGTAAKLKLRVKE-----GRMEPAXXXXXXXXXXXA-----------------SAVWST---------------------------EAAAPRVLVVGSGPAGLFAALALAQAGYKPIILERGQPVEVRGRDIGALFARKILNGESSNLCYGEGGAGTWSDGKLTTRIGKNS 201          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A7S1I2Y6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I2Y6_9EUGL)

HSP 1 Score: 166 bits (421), Expect = 1.740e-45
Identity = 109/254 (42.91%), Postives = 142/254 (55.91%), Query Frame = 1
Query:  232 RWRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDAR-TKKDVEPRFSYTVDVRLERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGVKP--IIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVRK 984
            RWR+FN+D+  S DPGKD+ GV  VL   V  +L ++  +  +  T + ++RKSFD R T+K+ EP+FSY VDV ++ D A K            G+ +P        P+  A                                 P  SL  P  C+           +VIVGAGPAGLFAAL LV+AG  P  +I+ERG PVE+RG+ IGALF R IL+ ESN+CYGEGGAGTWSDGKLT++IGRNS +VR+
Sbjct:   23 RWRVFNVDVTSSKDPGKDELGVHQVLHEAVCQRLRLECKD--LPVTSLTVIRKSFDGRNTRKNKEPKFSYVVDVTIDEDAAAK------------GRRKP--------PMELA---------------------------------PSESLPEPLRCAVTQR------KIVIVGAGPAGLFAALRLVDAGHGPGIVILERGQPVEKRGKDIGALFHRRILNRESNVCYGEGGAGTWSDGKLTSQIGRNSAHVRR 215          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A7S4LEA7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LEA7_9EUGL)

HSP 1 Score: 171 bits (434), Expect = 2.250e-45
Identity = 113/253 (44.66%), Postives = 146/253 (57.71%), Query Frame = 1
Query:  235 WRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDAR-TKKDVEPRFSYTVDVRLERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGV--KPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVRK 984
            WR+FN+D+P S DPGKDD  V D L A +  +LG+         TD+ +VRKSFDAR T+   EPRFSY VDV +++ L++K R +              PP           D++     P+V              S++PP  P+   D                 ++IVGAGP+GLFAAL LVEAG   +  I+ERG PVE+RGR IGALF RH+L+ ESN+CYGEGGAGT+SDGKLT+RIGRN+  VRK
Sbjct:  201 WRLFNVDVPCSQDPGKDDLTVHDPLKAAIRKRLGV-------LPTDIALVRKSFDARITRHASEPRFSYVVDVVIDKALSRKARYK--------------PP----------MDLA-----PVV-------------DSTAPPPCPK---DL--------------GPIIIVGAGPSGLFAALRLVEAGAGDRVTIIERGQPVEQRGRDIGALFHRHVLNNESNVCYGEGGAGTYSDGKLTSRIGRNAVQVRK 387          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A2R6XDP4_MARPO (FAD_binding_3 domain-containing protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XDP4_MARPO)

HSP 1 Score: 171 bits (432), Expect = 6.040e-44
Identity = 126/322 (39.13%), Postives = 173/322 (53.73%), Query Frame = 1
Query:   67 LVEREKERWGTGTARATERGLVDGKKEKAATKARGGRSGKARGKKNDRGAGPMILR-----WRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDARTKKDVEPRFSYTVDVRL------ERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVRKACIVL 999
            +VEREK ++    AR  +    D  ++K             RG+K D G   +  R     WR+FN+D+P   DPGKDD+ ++  L+  +   L +    + + ++   +VRKS DAR     EP+F YTVD+ +      E D +  L + +K      GK E        + +S+   + +V  +      S+++      S S  P++P    D  SS S+        A VV+VG+GPAGLFAAL LVE GV+  +VERG PVE RGR IGAL  R ILDP SNLCYGEGGAGTWSDGKLTTRIG+NS +V+     L
Sbjct:  119 IVEREKVKYSASEARRAQSKRGDSGRKKR------------RGEKKDSGTNSVNERSGDGHWRLFNIDVPFELDPGKDDFSLNGPLMDAIA--LLLSCRANRLHKSAFTLVRKSLDARK----EPKFVYTVDIDVRKFMETETDASSILSI-LKVVP---GKSE--------YSLSSRAPLDIVARLHDTEAVSSSSNVDERKSLSEIPSIP----DNTSSPSAPVRKGGNRAKVVVVGSGPAGLFAALTLVETGVEVTLVERGQPVETRGRDIGALMVRKILDPNSNLCYGEGGAGTWSDGKLTTRIGKNSSSVQTVLATL 406          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A0G4EJ48_VITBC (FAD_binding_2 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EJ48_VITBC)

HSP 1 Score: 164 bits (416), Expect = 3.810e-42
Identity = 114/287 (39.72%), Postives = 145/287 (50.52%), Query Frame = 1
Query:  160 KARGGRSGKARGKKNDRGAGPMILRWRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQR----AEDAMTRTDVVIVRKSFDARTK-------KDVEP--RFSYTVDVRLERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVR 981
            K R GR+ + RG++     G  + RWR+FN+ IP++ DPGKD   V D LL  V  + G+Q      +       V IVRKSFDAR +        D  P   F+Y VD+ +    A  +R R        G  EP+P  G   P S+A  +S   G+P VA                                             +VG+GPAGLFAAL L E+G    ++ERG PVERRGR IGA+  R +LD +SN C+GEGGAGTWSDGKLTTRIGRNS+ VR
Sbjct:   53 KKRRGRARRPRGRRTAPTGGQRVTRWRLFNIQIPVADDPGKDSTAVWDGLLRAVAAQAGLQEDFFLGQGGAEDVKVEIVRKSFDARPRVLRRTREADGTPLLHFNYVVDIEVPLQDAVNVRRRP-------GLCEPAPQVGDRLPPSSASPLSA--GLPPVA---------------------------------------------VVGSGPAGLFAALRLAESGHPVTLIERGQPVERRGRDIGAMIHRGVLDADSNFCFGEGGAGTWSDGKLTTRIGRNSQQVR 285          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A7S0T6K1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T6K1_9CHLO)

HSP 1 Score: 153 bits (387), Expect = 1.500e-40
Identity = 114/269 (42.38%), Postives = 148/269 (55.02%), Query Frame = 1
Query:  235 WRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGI----QRAEDAMTRTD-----VVIVRKSFDARTKKDVEPRFSYTVDVRLERDLA-----------KKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVR 981
            WR++++ + +  DPGKD + V+  L A     LG+    +R + +    D     V IVRKS DAR+   + P FSY +DV    D+A           K L++RI+       K E  PPD  +   +   D++    +   A  +A A    A  +    T+P G  D                 V+IVG GPAGLFAAL LVEAGV   ++ERG PVE RGR IGALFAR +LD +SNLCYGEGGAGTWSDGKLTTRIGRNS++VR
Sbjct:   29 WRLYDVKLDLEVDPGKDSFEVTSELRAAAAAMLGLPSNRKREDGSPLLKDGEGYGVRIVRKSCDARS---IPPVFSYILDVD---DIAINSATVYSGSMKPLKIRIRPK-----KFERVPPDWDLRDTTLPIDVTNPQSLQRHAPNAADAAAGPAIVAG---TIPGGGSDGDID-----------KRVLIVGLGPAGLFAALALVEAGVPVTVIERGQPVEGRGRDIGALFARRLLDGDSNLCYGEGGAGTWSDGKLTTRIGRNSDDVR 272          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: A0A7R9Y6W1_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y6W1_9VIRI)

HSP 1 Score: 157 bits (397), Expect = 1.420e-39
Identity = 117/272 (43.01%), Postives = 152/272 (55.88%), Query Frame = 1
Query:  193 GKKNDRGAGPM-ILRWRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDARTKKDVEPRFSYTVDVRLERDLAKKLRLRIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAAXXXXGAASVVIVGAGPAGLFAALELVEAG-------VKPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVRK 984
            G K   GA P  +  WR+F +++    DPGKD++GVS+ LL  +  +LG     DA T     + RKS DAR  K   P FSY VDV L+        LR   AR    +L   P   P+    +A D+S        A  +A    S+A S     + P+   D  +S          A  VV++GAGPAGLFAALEL EA        V+  ++ERG  VE+RGR+IGALF+R +LD +SN+CYGEGGAGTWSDGKLTTRIGRN+ +VR+
Sbjct:   33 GSKGGNGAVPKDVAAWRIFGVEVSPEDDPGKDEYGVSEELLCALQARLGANAPPDAATCR---VARKSVDARRGK--RPTFSYVVDVSLDG-------LRTCGAR----RLRAGPRQQPL----SAEDVSAA------AFCAADVRESSAGSPGDADSHPED--DVQTSV---------AKDVVVIGAGPAGLFAALELAEAAAAARGSNVRIRLLERGKGVEKRGRSIGALFSRRVLDADSNVCYGEGGAGTWSDGKLTTRIGRNAASVRR 267          
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Match: D8S019_SELML (FAD_binding_3 domain-containing protein n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S019_SELML)

HSP 1 Score: 151 bits (382), Expect = 1.360e-37
Identity = 106/255 (41.57%), Postives = 144/255 (56.47%), Query Frame = 1
Query:  235 WRMFNLDIPISADPGKDDWGVSDVLLAVVTDKLGIQRAEDAMTRTDVVIVRKSFDARTKKDVEPRFSYTVDVRLERDLAKKLRL-----RIKEAR*NNGKLEPSPPDGPVFPVSTARDISLVTGMPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSS-CSSAAXXXXGAASVVIVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPESNLCYGEGGAGTWSDGKLTTRIGRNSENVR 981
            WR   L++ +  DPGKD + +S  LL V++ ++G + A   ++R  + +VRKSFDAR  K +EPRF YTVD+ + R ++++ R      R+K+   + G +E        F    A  + LV    +                        G   FPS  C S+         V++VG+GPAGLFAAL L E GV+  +VERG PVE RGR IG+L  R IL  +SN CYGEGGAGTWSDGKLTTRIG+NSE+V+
Sbjct:   33 WRFSRLEVAVENDPGKDCYDISPGLLQVLSKRIGCKSAH--LSRDALSVVRKSFDAR--KVIEPRFVYTVDLNVTRLVSEQPRSWSFLSRMKQ---DPGVVE--------FLKRGAAAMDLVEMAQL------------------------GGKGFPSHHCPSSKTR------VLVVGSGPAGLFAALALAEMGVQVTLVERGYPVETRGRHIGSLMVRRILKEDSNFCYGEGGAGTWSDGKLTTRIGKNSEDVQ 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11907.1222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX72_9PHAE3.370e-9456.55FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D7FIX4_ECTSI3.700e-8453.47FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A836CLD3_9STRA1.890e-5347.60DAO domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1I2Y6_9EUGL1.740e-4542.91Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S4LEA7_9EUGL2.250e-4544.66Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A2R6XDP4_MARPO6.040e-4439.13FAD_binding_3 domain-containing protein n=2 Tax=Ma... [more]
A0A0G4EJ48_VITBC3.810e-4239.72FAD_binding_2 domain-containing protein n=2 Tax=Vi... [more]
A0A7S0T6K1_9CHLO1.500e-4042.38Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7R9Y6W1_9VIRI1.420e-3943.01Hypothetical protein n=2 Tax=Prasinoderma colonial... [more]
D8S019_SELML1.360e-3741.57FAD_binding_3 domain-containing protein n=5 Tax=Se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11907contigH-paniculata_contig11907:2942..7651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.9
Seed ortholog evalue1.1e-34
Seed eggNOG ortholog2880.D7FIX4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGs2QSVD@2759,COG2509@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1008
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11907.1222.1prot_H-paniculata_contig11907.1222.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11907 5859..7651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.6266277-UTR-H-paniculata_contig11907:2941..32471622928907.6266277-UTR-H-paniculata_contig11907:2941..3247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 2942..3247 +
1691480662.6431746-UTR-H-paniculata_contig11907:2941..32471691480662.6431746-UTR-H-paniculata_contig11907:2941..3247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 2942..3247 +
1622928907.6371722-UTR-H-paniculata_contig11907:4283..43911622928907.6371722-UTR-H-paniculata_contig11907:4283..4391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 4284..4391 +
1691480662.6547728-UTR-H-paniculata_contig11907:4283..43911691480662.6547728-UTR-H-paniculata_contig11907:4283..4391Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 4284..4391 +
1622928907.6493168-UTR-H-paniculata_contig11907:5369..54681622928907.6493168-UTR-H-paniculata_contig11907:5369..5468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 5370..5468 +
1691480662.6640153-UTR-H-paniculata_contig11907:5369..54681691480662.6640153-UTR-H-paniculata_contig11907:5369..5468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 5370..5468 +
1622928907.6634526-UTR-H-paniculata_contig11907:5780..58581622928907.6634526-UTR-H-paniculata_contig11907:5780..5858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 5781..5858 +
1691480662.6738324-UTR-H-paniculata_contig11907:5780..58581691480662.6738324-UTR-H-paniculata_contig11907:5780..5858Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11907 5781..5858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928907.6771986-CDS-H-paniculata_contig11907:5858..60941622928907.6771986-CDS-H-paniculata_contig11907:5858..6094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11907 5859..6094 +
1691480662.683376-CDS-H-paniculata_contig11907:5858..60941691480662.683376-CDS-H-paniculata_contig11907:5858..6094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11907 5859..6094 +
1622928907.687896-CDS-H-paniculata_contig11907:7470..76511622928907.687896-CDS-H-paniculata_contig11907:7470..7651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11907 7471..7651 +
1691480662.6928985-CDS-H-paniculata_contig11907:7470..76511691480662.6928985-CDS-H-paniculata_contig11907:7470..7651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11907 7471..7651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11907.1222.1

>prot_H-paniculata_contig11907.1222.1 ID=prot_H-paniculata_contig11907.1222.1|Name=mRNA_H-paniculata_contig11907.1222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MPIVATTSATATYSTAPSSSSPPTLPQGSLDFPSSCSSAASSSAGAASVV
IVGAGPAGLFAALELVEAGVKPIIVERGMPVERRGRAIGALFARHILDPE
SNLCYGEGGAGTWSDGKLTTRIGRNSENVRKACIVLCA*
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mRNA from alignment at H-paniculata_contig11907:2942..7651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11907.1222.1 ID=mRNA_H-paniculata_contig11907.1222.1|Name=mRNA_H-paniculata_contig11907.1222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4710bp|location=Sequence derived from alignment at H-paniculata_contig11907:2942..7651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCTCCCTCCCTCCCTCGTCCCCGCCGCGGTCGTCAGGCTACCGGTCGGA CCGCCCACCGCGCGAACTGGTAGAGCGCGAAAAAGAGCGCTGGGGTACAG GAACCGCTCGAGCGACAGAACGCGGGCTCGTAGACGGCAAAAAAGAAAAA GCCGCGACTAAAGCTAGGGGCGGGCGCAGCGGCAAAGCGAGGGGTAAAAA GAACGACCGAGGGGCGGGCCCCATGATTCTACGATGGCGCATGTTCAACC TCGATATCCCGATATCAGCGGACCCGGGAAAGGATGACTGGGGGGTGTCT GATGTGGTACGTACCGGGTCGGGGACAGGGGCGGGGGGAGTTACCAATAA TCAACAAAAATATTTCAAATGAAAGGAGGGGGGCGGGGGCGGGGAGAGGG AAGGGCGTTCTGTTTAAAAACGACAACGAGGATCGCAAAGACTGAAGACC ACGATCTTGACGATAGTAAGTGGCTTCTGGGTAGCCCATAAACATGCCTG TGTGTTATTATCGTCATTCTTTAAGTTCATAAGGGGGGGTTATGTGATGG TGCTTTCACGAATGAAATTCGCGTTCATTAATGCCTGTCAGGATGTGTAC ATGTACTGTGTGGTGAGATTATCTTTTTGTTCCCTGTGTCATGAATGACG ATGATAATCGTGATGGCAGTAAGAGGTTATGCCGCCCAAACAAAATCTAG GCTGCGTACTACTGCTATATTTTACTCGAACAGCACGCCTGCCAGCACAA AAACAACAAATAGGAGGTGCTCATGGAAGATTACTTTTTTTTCTTCTTTC TTAACCCCCGGAAGGCTGAGGCAAAAACCTTCACCGATGCTTCCATACTT GAGTATTTTACCAAATTACAATGGGTCAGACGACTTTTGACTTGGAATTC CTACGATGCTTCAATGTGATCTGTCGGGTTTCTGCCCTCCAGGCCACATT TCACGGGGGAGATACTGTGTACTAGCTGCTAGCCACCATTCATTGCGTCC CTGCGTCGAGCCGGGTTGGACCGGTCCGTTCGGCATGTGTGCCGATCTCC AAACGTTGTACGTTCGGCAGGCGTGACAAATCAATACCCGCCAATGGCAG GCATGGAAGCATGTATGTGTGTGTGTCTATATATATATATATATATAAAC AACGTATTATTTTGCTCATGTTTATGTCCTGCTTGTTACTTGTTTTTGGC GATGGTGACACTACTGTAAACAAAAGACAAAAGGGGAATCAATCAGTCCT CTACCAAAAATGAAGCAAGCCTCGTTTTTGTTTTTTTAATTGTGTTGTAT TTTGTTATGTACGCATCTGTGCTGGCACCTCTCTCGGCGCAGCTACTGGC GGTAGTAACAGACAAGCTAGGAATTCAGCGGGCCGAAGATGCAATGACCA GAACAGACGTAGTTATTGTGCGGAAGTCCTTCGACGCCAGGACTAAGAAG GTGAGAAATGATTGGGTTTACTGTCGTGGTGTAGCAGTAGTAGTAGTAGT AGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAACCATAT GCGGAGCCCCCCGGTCTTTATCAAGTTAGAGTCTCGAATGCCCCGATAGG GTACATTGCTACACTTGGACCCCCGCCCCAGGGGGGAAGAGGGGGGAGCC TCTCAATCTCGGTAATCCCCCAGGGTAATCGCTTGAACCTAGTAGCTTGG ATGGTTGTTCCGGTCCTAATCAAGGATAAACAACAGTAGTAGTAGTAGTA GGGGTAGAGTAGTTCAGTAAATAAGAAGCCTTCGAAGCTCCCCACAGCTA AATAGTCAAAGGCTTTCGACTAATATCCGGCGACCAACGAACCCTCTTTG TGGAAAATACAGATGTTGAGATACTCTCCGTTTTTGTTTTTTTTCTTTAT GTCTTTGAAAAGCCCTTTTAGACCGTGTGTATGCAGGATGCTGTGTTGCA GCCGATCCCTTCTTCAGCTTAGATGCTGATGATAGTGTTGGTGCTCGTGC TGCTGGTGGTGATGGTGGTGGAGGAGGAGGAGGAAACTTCGGGGTAGTAA GGGTTCCTCAACTCCGTACAGTAAAGATTAATCCTTCAACGTAAACTAGG CAGTCGTGGGATTTTTTATATGCTTCATCTAAACGGATGGTTGAGGGGGA CAGTTATGCTAATCTCATTGACTGTATTGTGCCGTACCCTCTGTCTACGC TGAGTAGACCGACTGGCTGTCGGAGCAGTGGCGGTTCTCAATTCCCCCGG AACAAATGATGTCGCAGGAGTTGTTTTTCCTCTGTTGTTTTTCTTGTTGG GGCGGGTCACAGACAGAGTACTGGATTTTCTATCACGTTTGGTGATGATG GTATTGCTGTACTGTATTGTGTGTGTGTTTTCCCCCCTATCTCTCTATCT TTATATATATATATATATATAAACCCAGGATGTGGAACCTCGCTTCTCGT ATACGGTGGACGTGCGGCTGGAGAGAGATCTTGCCAAGAAACTGAGACTG CGGATCAAAGAGGCGAGATAAAACAATGTTATATTTTCTTCTTTTTTTTG CTCTTTTTTGTTCCTCTTCCTTTTACTACTGATAGTTTCCTCTTGTATTT TATTCCTTTTATTCCTTTTATTGCTCTTTTTCTTGTTCTTTGTTCGTTTT TGTTCGCTTTTTTTTTCGTGAACATGCTGCTTATTTTACCCAAGCACACC AAAGTAGTAGATACTTTCCCCAGGACCTCCCCACCTCCCCCGCACCTTTC TCGTGTTTCGCTATATCGCACACTCACTCCTTTTGCTCGCGGTATCTGTG ACATCCATTGTACGTACACATACATACAAACACACACAGGGCAAGCTCGA GCCTTCGCCTCCGGATGGACCTGTTTTCCCGGTTTCTACCGCCCGAGACA TCTCCCTCGTCACGGGGATGCCTATTGTAGCCACCACCTCTGCGACCGCC ACCTACAGTACGGCTCCATCATCGTCATCACCACCGACTCTGCCACAAGG TTCTTTGGATTTTCCTTCTTCTTGCTCTTCTGCTGCTTCGAGTAGTGCTG GGGCAGCGAGCGTGGTAATTGTTGGTGCCGGACCGGCCGGGCTGTTTGCG GCGTTGGAGCTTGTGGAGGCCGGAGTTAAGCCCATCATCGTCGAGCGCGG CATGTGAGGAAAGGGAGAGTAAAGTCACAGGGCCTGCTAGTATACGTAGT ATGCCTGTATATGCAGTCGTACTACAGTTTTTTTTTGTTCTCGATCCACG CACGACACGACGGCTTTGCTGTGCGCACAGTGACTCGCAACGTACCAAGA TAATAGAGAGTAATGTTAGGCGCACTGATAAGTAAAGATTGGCTGTTAAT TAAGCCTTGAAGGGCTGCTTCACAACTTGAAGCCTTGTTGTCTAGGATGT GCAATTTTGGCTGTTTTTTACACGTAAAGTGGCGTTAATATGCTGGAAAA TACCAACAGAGGCGATGACTGTACCAGGTGATTCCGTCGGCGTTTTGCAG CCCTCCGACGAAAGAGCAACAATGGGTGATTCGCCGTCATCTTGCGCTCC GAACGGATTAAGGAGATAGTTACCTGAGTATAGAATTGAAAAAACGTTCC GAAACTGAAATAAGAGCGTTCCCGTCAATAGATTCGTCAAGAGAACGAGT CTAAGCCCTAACGGGTAGGGCACGGCTAGTGGGGTAACCCATTGCCGATG ACCGGGCGCAAGTGTGATCAAGGGTTTTAACGAGTGAGGATTCTGCTACT CAAAGGGCAGTCTAAAACCGATTGTCAGGTCGGCCAAGTCTCGTACAACG GCTACCCCACAATTCCCTCGGTTCTTGAACTTAGAACCGAGGGGAGACCG ACGTGATCATTAACCCGAGTTCTTCGGGGATCTAAATTGGGGCTTTGTAC TTGATACTTAGTCGTGGGATGAAGCTCCTTCCCTCACAGCACTTACGAGG TATGTTAACAGAGGTTGCATATGCCGGGGTGGAAAGGAAAGGATTCGTCA AGACTTTTATTTCTTTGTTTTCCTTTAAGAAATGTGCTTTTGAAAAAACG CTACCCAAAATTTGTGCCCCCATACGAGTAGTTCCTACCGTACTTCGTAT ATACATGGCCTGAATCTAAATTAAGACGCTTATTTTCGGCGAGGATGTAG GTGTTATTTTCATGTAAATGCTATCGTGTACTGTACGATTTACTCTACGA GTAGGTTTTATGTGACGAACCAAAAGAAAAGACTGCCTTCGTTAATTAAC CCGTTGATCCCGAAGGTATTGTGGCGTGGCTCCCCTAGTTTGCGTTAAGA TTCGTTGATGAGAAGTTACTTGAATATTGGATTGAAAAAAAGCTGTTCCG GAATGATGGCAAGGACTATCACCTTACCGTATTCAATGATCGGGATGCTA TTGCTCCTTCCTGCAGAAAAGATCCCAAACGTATCTTTCATGCGATCATT TTCCTAAAAGTTAAGATTGAAGATGAACCAATCGACACAAGTGAAGAAGC ACATACACACACACACGCTTCAAAACCAGGCCGGTGGAGAGGAGGGGACG AGCTATCGGGGCTCTCTTCGCTCGCCATATTCTCGATCCCGAGAGTAACC TGTGCTACGGCGAAGGGGGTGCCGGGACATGGAGCGACGGAAAGCTCACC ACGAGAATCGGCAGAAACAGTGAAAACGTCCGCAAGGCATGTATAGTACT ATGCGCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig11907:2942..7651+

>mRNA_H-paniculata_contig11907.1222.1 ID=mRNA_H-paniculata_contig11907.1222.1|Name=mRNA_H-paniculata_contig11907.1222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig11907:2942..7651+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTATTGTAGCCACCACCTCTGCGACCGCCACCTACAGTACGGCTCC
ATCATCGTCATCACCACCGACTCTGCCACAAGGTTCTTTGGATTTTCCTT
CTTCTTGCTCTTCTGCTGCTTCGAGTAGTGCTGGGGCAGCGAGCGTGGTA
ATTGTTGGTGCCGGACCGGCCGGGCTGTTTGCGGCGTTGGAGCTTGTGGA
GGCCGGAGTTAAGCCCATCATCGTCGAGCGCGGCATATGCCTATTGTAGC
CACCACCTCTGCGACCGCCACCTACAGTACGGCTCCATCATCGTCATCAC
CACCGACTCTGCCACAAGGTTCTTTGGATTTTCCTTCTTCTTGCTCTTCT
GCTGCTTCGAGTAGTGCTGGGGCAGCGAGCGTGGTAATTGTTGGTGCCGG
ACCGGCCGGGCTGTTTGCGGCGTTGGAGCTTGTGGAGGCCGGAGTTAAGC
CCATCATCGTCGAGCGCGGCATGCCGGTGGAGAGGAGGGGACGAGCTATC
GGGGCTCTCTTCGCTCGCCATATTCTCGATCCCGAGAGTAACCTGTGCTA
CGGCGAAGGGGGTGCCGGGACATGGAGCGACGGAAAGCTCACCACGAGAA
TCGGCAGAAACAGTGAAAACGTCCGCAAGGCATGTATAGTACTATGCGCG
TAGGCCGGTGGAGAGGAGGGGACGAGCTATCGGGGCTCTCTTCGCTCGCC
ATATTCTCGATCCCGAGAGTAACCTGTGCTACGGCGAAGGGGGTGCCGGG
ACATGGAGCGACGGAAAGCTCACCACGAGAATCGGCAGAAACAGTGAAAA
CGTCCGCAAGGCATGTATAGTACTATGCGCGTAG
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