mRNA_H-paniculata_contig4999.12215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4999.12215.1
Unique NamemRNA_H-paniculata_contig4999.12215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4999.12215.1 vs. uniprot
Match: A0A6H5L2P2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-13
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:   16 QRAGSPTFDTVIELQRGKVNTWTIIQNVGLAVDDILENRPYGVQRRIRIEDDHQVCNA 189
            QRAG+P FDT++EL+RG+VN WTI++NV LAVD IL  +PY V++R RI  D  +  A
Sbjct:  803 QRAGAPIFDTIVELERGQVNKWTIVRNVDLAVDAILSGKPYKVEQRTRIPHDSGLQQA 860
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BLAST of mRNA_H-paniculata_contig4999.12215.1 vs. uniprot
Match: D7FII7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.130e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 HQVLIQRAGSPTFDTVIELQRGKVNTWTIIQNVGLAVDDILENRPYGVQRRIRIEDDHQVCNA 189
            ++V  QRAG+P FDT++EL+RG+VN WTI+ NV LAVD IL  +PY V +R RI +D  +  A
Sbjct:  219 NKVQRQRAGAPIFDTIVELERGQVNKWTIVWNVDLAVDAILSGKPYKVSQRTRIPNDSGLQQA 281
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BLAST of mRNA_H-paniculata_contig4999.12215.1 vs. uniprot
Match: A0A7S1EUK0_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUK0_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 4.720e-8
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   16 QRAGSPTFDTVIELQRGKVNTWTIIQNVGLAVDDILENRPYGVQRRIRIED 168
            +R GSP FD +IEL+  + NTWTII++   AVD IL N+ Y VQRR R  D
Sbjct:  263 ERGGSPIFDVIIELKPREFNTWTIIEDTKTAVDCILSNKSYKVQRRHRNPD 313
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BLAST of mRNA_H-paniculata_contig4999.12215.1 vs. uniprot
Match: A0A6B2LRM3_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LRM3_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 5.840e-6
Identity = 24/50 (48.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:   16 QRAGSPTFDTVIELQRGKVNTWTIIQNVGLAVDDILENRPYGVQRRIRIE 165
            QR  +  FD +IEL++G +  W II NV   VD ILE + Y  Q RIR E
Sbjct:   55 QRVANSIFDVIIELKKGDLTQWNIIDNVSETVDAILEGKSYAYQCRIRDE 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4999.12215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2P2_9PHAE1.060e-1356.90AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FII7_ECTSI1.130e-1353.97AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1EUK0_9RHOD4.720e-854.90Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A6B2LRM3_9EUKA5.840e-648.00Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4999contigH-paniculata_contig4999:14462..14659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.2e-11
Seed eggNOG ortholog2880.D7FII7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPases associated with a variety of cellular activities
EggNOG OGs2QQ4X@2759,COG3854@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930469.9489787-CDS-H-paniculata_contig4999:14461..146591622930469.9489787-CDS-H-paniculata_contig4999:14461..14659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4999 14462..14659 +
1691481305.8233628-CDS-H-paniculata_contig4999:14461..146591691481305.8233628-CDS-H-paniculata_contig4999:14461..14659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4999 14462..14659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4999.12215.1prot_H-paniculata_contig4999.12215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4999 14462..14659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4999.12215.1

>prot_H-paniculata_contig4999.12215.1 ID=prot_H-paniculata_contig4999.12215.1|Name=mRNA_H-paniculata_contig4999.12215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
HQVLIQRAGSPTFDTVIELQRGKVNTWTIIQNVGLAVDDILENRPYGVQR
RIRIEDDHQVCNAKT*
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mRNA from alignment at H-paniculata_contig4999:14462..14659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4999.12215.1 ID=mRNA_H-paniculata_contig4999.12215.1|Name=mRNA_H-paniculata_contig4999.12215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig4999:14462..14659+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCAGGTTTTGATACAGCGTGCGGGTTCGCCTACCTTCGACACCGTGAT
CGAGTTGCAAAGGGGAAAGGTAAACACGTGGACGATCATCCAGAACGTGG
GTTTAGCGGTGGACGATATCCTAGAAAACAGACCGTACGGCGTCCAGAGA
AGGATTCGGATCGAAGACGACCACCAGGTTTGCAATGCAAAGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4999:14462..14659+

>mRNA_H-paniculata_contig4999.12215.1 ID=mRNA_H-paniculata_contig4999.12215.1|Name=mRNA_H-paniculata_contig4999.12215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig4999:14462..14659+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCAGGTTTTGATACAGCGTGCGGGTTCGCCTACCTTCGACACCGTGAT
CGAGTTGCAAAGGGGAAAGGTAAACACGTGGACGATCATCCAGAACGTGG
GTTTAGCGGTGGACGATATCCTAGAAAACAGACCGTACGGCGTCCAGAGA
AGGATTCGGATCGAAGACGACCACCAGGTTTGCAATGCAAAGACGTGACA
CCAGGTTTTGATACAGCGTGCGGGTTCGCCTACCTTCGACACCGTGATCG
AGTTGCAAAGGGGAAAGGTAAACACGTGGACGATCATCCAGAACGTGGGT
TTAGCGGTGGACGATATCCTAGAAAACAGACCGTACGGCGTCCAGAGAAG
GATTCGGATCGAAGACGACCACCAGGTTTGCAATGCAAAGACGTGA
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