mRNA_H-paniculata_contig4999.12214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4999.12214.1
Unique NamemRNA_H-paniculata_contig4999.12214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: D7FII7_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII7_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.820e-29
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 KTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            +TVVIVDTSNEIAGDG IPH  AIG+SRR+MV +K  QH VM EALQNHTPQTIVVDE+SN  EA+AC+DIKAR
Sbjct:  101 QTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKTDQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKAR 174          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: A0A6H5L2P2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 8.430e-28
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   13 KTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            +TVVIVDTSNEIAGDG IPH  AIG+SRR+MV NK  QH VM EALQNHTPQTIVVDE+S+  EA+AC+DIKAR
Sbjct:  680 QTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPNKAGQHNVMKEALQNHTPQTIVVDEVSDKNEARACLDIKAR 753          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: A0A0A9H0K5_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9H0K5_ARUDO)

HSP 1 Score: 94.0 bits (232), Expect = 2.590e-23
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    4 HYTKTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            HY K V+IVDTSNEI GDG IPH   IG +RRL V N+D QH+V+IEA++NH PQ IV+DEI   LEA A   I  R
Sbjct:    5 HYNKRVMIVDTSNEIGGDGDIPH-PGIGNARRLQVPNQDMQHKVLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQR 80          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: X1PHJ1_9ZZZZ (AAA domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1PHJ1_9ZZZZ)

HSP 1 Score: 87.0 bits (214), Expect = 1.910e-20
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 YTKTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            + K V+++DTSNEIAGDG IPH  +IG +RR+ V   D QH VMIEA++NH P+ I++DEI   LEA+A   I  R
Sbjct:   37 FQKRVIVIDTSNEIAGDGDIPH-PSIGHARRMQVVTPDKQHAVMIEAVENHMPEVIIIDEIGTELEAQAARTIAER 111          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: UPI001D13F098 (AAA family ATPase n=2 Tax=Leptolyngbya ectocarpi TaxID=1202 RepID=UPI001D13F098)

HSP 1 Score: 90.5 bits (223), Expect = 2.850e-20
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   13 KTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            K VVI+DTSNEIAGDG IPH  AIG +RR+ VA  + QH+VMIEA++NHTP+ IV+DEI   LEA A   I  R
Sbjct:  174 KRVVIIDTSNEIAGDGDIPH-PAIGRARRMQVARPEQQHQVMIEAVENHTPEVIVIDEIGTELEALAARTIAER 246          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: A0A8B8NSC8_9MYRT (uncharacterized protein ycf45 n=2 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NSC8_9MYRT)

HSP 1 Score: 92.8 bits (229), Expect = 2.990e-20
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    7 YTKTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            Y K V+IVDTSNEI GDG IPH E IG +RR+ V N D QH+V+IEA++NH PQ IV+DEIS  LEA A   I  R
Sbjct:  221 YGKRVMIVDTSNEIGGDGDIPH-EGIGNARRMQVPNSDMQHKVLIEAVENHMPQVIVIDEISTKLEAMAASTIAQR 295          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: F4Y2N6_9CYAN (R3H domain-containing protein n=29 Tax=Moorena TaxID=1155738 RepID=F4Y2N6_9CYAN)

HSP 1 Score: 92.8 bits (229), Expect = 3.070e-20
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   13 KTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            K VVI+DTSNEIAGDG IPH  AIG +RR+ VA+ +HQH+VMIEA++NH P+ IV+DEI   LEA+A   I  R
Sbjct:  223 KRVVIIDTSNEIAGDGDIPH-PAIGRARRMQVASPEHQHQVMIEAVENHMPEVIVIDEIGTELEAQAARTIAER 295          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: A0A6G1CZP6_9ORYZ (AAA domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CZP6_9ORYZ)

HSP 1 Score: 89.7 bits (221), Expect = 3.470e-20
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 YTKTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            + K VV+VDTSNEI GDG IPH  AIG +RR+ VA    QHRVMIEA++NH P+ ++VDEI    EA+AC  I  R
Sbjct:   55 FQKRVVVVDTSNEIGGDGDIPHA-AIGGARRMQVAEPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQACRSIAER 129          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: A0A0A8ZXC3_ARUDO (Uncharacterized protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A8ZXC3_ARUDO)

HSP 1 Score: 90.1 bits (222), Expect = 3.630e-20
Identity = 46/76 (60.53%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 YTKTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            Y K V+IVDTSNEI GDG IPH   IG +RRL V N+D QH+V+IEA++NH PQ IV+DEI   LEA A   I  R
Sbjct:    6 YKKRVMIVDTSNEIGGDGDIPH-PGIGNARRLQVPNQDIQHKVLIEAVENHMPQAIVIDEIGTKLEAMAASTIAQR 80          
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Match: A0A1F4TW81_9BACT (R3H domain-containing protein n=1 Tax=candidate division WOR-1 bacterium RIFOXYB2_FULL_48_7 TaxID=1802583 RepID=A0A1F4TW81_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 3.730e-20
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    7 YTKTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEALQNHTPQTIVVDEISNSLEAKACMDIKAR 234
            +++ V++VDTSNEIAGDG IPH  AIG++RR+ V + +HQH+VMIEA++NH P+ I+VDEI    EA AC  I  R
Sbjct:  152 FSRRVIVVDTSNEIAGDGDIPH-PAIGKARRMQVPSPEHQHKVMIEAVENHMPEVIIVDEIGTEAEALACRTIAER 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4999.12214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FII7_ECTSI1.820e-2977.03AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L2P2_9PHAE8.430e-2877.03AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0A9H0K5_ARUDO2.590e-2361.04Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
X1PHJ1_9ZZZZ1.910e-2053.95AAA domain-containing protein (Fragment) n=1 Tax=m... [more]
UPI001D13F0982.850e-2062.16AAA family ATPase n=2 Tax=Leptolyngbya ectocarpi T... [more]
A0A8B8NSC8_9MYRT2.990e-2061.84uncharacterized protein ycf45 n=2 Tax=Rhodamnia ar... [more]
F4Y2N6_9CYAN3.070e-2062.16R3H domain-containing protein n=29 Tax=Moorena Tax... [more]
A0A6G1CZP6_9ORYZ3.470e-2057.89AAA domain-containing protein n=1 Tax=Oryza meyeri... [more]
A0A0A8ZXC3_ARUDO3.630e-2060.53Uncharacterized protein n=2 Tax=Arundo donax TaxID... [more]
A0A1F4TW81_9BACT3.730e-2056.58R3H domain-containing protein n=1 Tax=candidate di... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4999contigH-paniculata_contig4999:8000..8524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog2880.D7FII7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPases associated with a variety of cellular activities
EggNOG OGs2QQ4X@2759,COG3854@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size237
Cds size237
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930469.8701816-CDS-H-paniculata_contig4999:7999..81301622930469.8701816-CDS-H-paniculata_contig4999:7999..8130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4999 8000..8130 +
1691481305.805005-CDS-H-paniculata_contig4999:7999..81301691481305.805005-CDS-H-paniculata_contig4999:7999..8130Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4999 8000..8130 +
1622930469.8942635-CDS-H-paniculata_contig4999:8418..85241622930469.8942635-CDS-H-paniculata_contig4999:8418..8524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4999 8419..8524 +
1691481305.8145418-CDS-H-paniculata_contig4999:8418..85241691481305.8145418-CDS-H-paniculata_contig4999:8418..8524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4999 8419..8524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4999.12214.1prot_H-paniculata_contig4999.12214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4999 8000..8524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4999.12214.1

>prot_H-paniculata_contig4999.12214.1 ID=prot_H-paniculata_contig4999.12214.1|Name=mRNA_H-paniculata_contig4999.12214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MHYTKTVVIVDTSNEIAGDGAIPHREAIGESRRLMVANKDHQHRVMIEAL
QNHTPQTIVVDEISNSLEAKACMDIKAR*
back to top

mRNA from alignment at H-paniculata_contig4999:8000..8524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4999.12214.1 ID=mRNA_H-paniculata_contig4999.12214.1|Name=mRNA_H-paniculata_contig4999.12214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=525bp|location=Sequence derived from alignment at H-paniculata_contig4999:8000..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTACACCAAGACGGTCGTAATCGTCGACACCAGCAATGAGATAGC TGGAGATGGAGCGATTCCGCACCGTGAGGCGATTGGCGAGAGCAGGAGGC TGATGGTAGCTAATAAGGACCACCAACATAGGTGATAAAACAAGATTGAC GTACATACCACATTTGCTGCGGTCATGTTTCGAGGCATATATCGGGCACT TGGATGGACTCGTCATCCCGGTATTCGTTTACGTACCACTTTTGATTACC CTTCTTTCACAGAGCCTGGGGTACCAACAGACCAGCAATCGTTCGGCGAG GTTGATGCATTATTGTTCTAGGAGACCATTGTGTTTTCTTCTCTTCGTCT CTCTCTCACTGTATTCATGCCGACTGCTAATGTCGCACGTTCTCCCGTCG GGTTATGGCTGCCAAACAGGGTTATGATCGAGGCTCTCCAAAACCATACC CCACAGACCATCGTGGTGGATGAGATCAGCAACAGCCTAGAGGCGAAAGC TTGCATGGATATCAAAGCTCGGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4999:8000..8524+

>mRNA_H-paniculata_contig4999.12214.1 ID=mRNA_H-paniculata_contig4999.12214.1|Name=mRNA_H-paniculata_contig4999.12214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig4999:8000..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACTACACCAAGACGGTCGTAATCGTCGACACCAGCAATGAGATAGC
TGGAGATGGAGCGATTCCGCACCGTGAGGCGATTGGCGAGAGCAGGAGGC
TGATGGTAGCTAATAAGGACCACCAACATAGATGCACTACACCAAGACGG
TCGTAATCGTCGACACCAGCAATGAGATAGCTGGAGATGGAGCGATTCCG
CACCGTGAGGCGATTGGCGAGAGCAGGAGGCTGATGGTAGCTAATAAGGA
CCACCAACATAGGGTTATGATCGAGGCTCTCCAAAACCATACCCCACAGA
CCATCGTGGTGGATGAGATCAGCAACAGCCTAGAGGCGAAAGCTTGCATG
GATATCAAAGCTCGGTAAGGTTATGATCGAGGCTCTCCAAAACCATACCC
CACAGACCATCGTGGTGGATGAGATCAGCAACAGCCTAGAGGCGAAAGCT
TGCATGGATATCAAAGCTCGGTAA
back to top