mRNA_H-paniculata_contig4998.12212.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4998.12212.1
Unique NamemRNA_H-paniculata_contig4998.12212.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4998.12212.1 vs. uniprot
Match: A0A6H5L9N5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9N5_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.650e-66
Identity = 106/166 (63.86%), Postives = 128/166 (77.11%), Query Frame = 1 
Query:    1 HLTLVINGVLGDDGESQCFNAFLSPYNDPSYAQVNAGHLTGISKLIGSNMKCTVRDMGGFTEQAQTPFSVRLSMLDVLALIRQSWVYERFAETKCGTMTVVVIKSQ--RGSTKLRLAWSNHGDLNATQATVYTEREWKKTSYAGKTRNLPDGFADVDMPLDRNLVF 492
            H T+V+NGV G +GE   FN+++SP +D SY  V+ GHL GISKLI     C VRDMGG+TE A  PF VR+SM DVLAL+RQSWVYERF +TKCGTMTVVV++SQ  RG  KLR+AW N G L+ T+A VYTEREWKKT +AGKT+ +P+G ADVDM LD+ LVF
Sbjct:  133 HFTVVLNGV-GPNGE---FNSYVSPNDDASYRAVSPGHLKGISKLISGATNCNVRDMGGYTEGAAVPFCVRISMPDVLALMRQSWVYERFCQTKCGTMTVVVLRSQHSRGKDKLRVAWENSGSLDYTKAQVYTEREWKKTKFAGKTKTMPEGIADVDMALDKTLVF 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4998.12212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9N5_9PHAE1.650e-6663.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4998contigH-paniculata_contig4998:122..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004630.1
Exons1
Model size501
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930469.8187375-CDS-H-paniculata_contig4998:121..6221622930469.8187375-CDS-H-paniculata_contig4998:121..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4998 122..622 +
1691481305.7946482-CDS-H-paniculata_contig4998:121..6221691481305.7946482-CDS-H-paniculata_contig4998:121..622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4998 122..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4998.12212.1prot_H-paniculata_contig4998.12212.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4998 122..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4998.12212.1

>prot_H-paniculata_contig4998.12212.1 ID=prot_H-paniculata_contig4998.12212.1|Name=mRNA_H-paniculata_contig4998.12212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
HLTLVINGVLGDDGESQCFNAFLSPYNDPSYAQVNAGHLTGISKLIGSNM
KCTVRDMGGFTEQAQTPFSVRLSMLDVLALIRQSWVYERFAETKCGTMTV
VVIKSQRGSTKLRLAWSNHGDLNATQATVYTEREWKKTSYAGKTRNLPDG
FADVDMPLDRNLVFVS*
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mRNA from alignment at H-paniculata_contig4998:122..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4998.12212.1 ID=mRNA_H-paniculata_contig4998.12212.1|Name=mRNA_H-paniculata_contig4998.12212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig4998:122..622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTAACGCTGGTCATAAATGGCGTCCTGGGAGACGACGGAGAATCGCA
ATGCTTCAATGCGTTCCTCTCTCCGTATAATGACCCCTCGTACGCGCAAG
TGAACGCTGGGCACTTGACGGGCATATCCAAGCTCATAGGCAGCAACATG
AAGTGCACGGTGAGAGACATGGGCGGCTTCACGGAGCAAGCGCAAACGCC
TTTCAGCGTGAGGCTCAGCATGCTGGACGTGCTCGCGCTCATCCGCCAGT
CGTGGGTATACGAAAGGTTTGCGGAGACAAAATGTGGAACCATGACGGTG
GTCGTGATCAAGTCCCAGCGCGGGAGCACGAAGCTACGGCTTGCGTGGAG
CAACCACGGGGATCTGAATGCCACTCAGGCCACGGTGTACACGGAGAGGG
AGTGGAAAAAAACGAGCTACGCAGGCAAGACGAGGAATCTGCCGGACGGA
TTCGCCGATGTAGACATGCCCCTCGACAGAAATCTCGTCTTTGTATCGTA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig4998:122..622+

>mRNA_H-paniculata_contig4998.12212.1 ID=mRNA_H-paniculata_contig4998.12212.1|Name=mRNA_H-paniculata_contig4998.12212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig4998:122..622+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTAACGCTGGTCATAAATGGCGTCCTGGGAGACGACGGAGAATCGCA
ATGCTTCAATGCGTTCCTCTCTCCGTATAATGACCCCTCGTACGCGCAAG
TGAACGCTGGGCACTTGACGGGCATATCCAAGCTCATAGGCAGCAACATG
AAGTGCACGGTGAGAGACATGGGCGGCTTCACGGAGCAAGCGCAAACGCC
TTTCAGCGTGAGGCTCAGCATGCTGGACGTGCTCGCGCTCATCCGCCAGT
CGTGGGTATACGAAAGGTTTGCGGAGACAAAATGTGGAACCATGACGGTG
GTCGTGATCAAGTCCCAGCGCGGGAGCACGAAGCTACGGCTTGCGTGGAG
CAACCACGGGGATCTGAATGCCACTCAGGCCACGGTGTACACGGAGAGGG
AGTGGAAAAAAACGAGCTACGCAGGCAAGACGAGGAATCTGCCGGACGGA
TTCGCCGATGTAGACATGCCCCTCGACAGAAATCTCGTCTTTGTATCGTA
GCACCTAACGCTGGTCATAAATGGCGTCCTGGGAGACGACGGAGAATCGC
AATGCTTCAATGCGTTCCTCTCTCCGTATAATGACCCCTCGTACGCGCAA
GTGAACGCTGGGCACTTGACGGGCATATCCAAGCTCATAGGCAGCAACAT
GAAGTGCACGGTGAGAGACATGGGCGGCTTCACGGAGCAAGCGCAAACGC
CTTTCAGCGTGAGGCTCAGCATGCTGGACGTGCTCGCGCTCATCCGCCAG
TCGTGGGTATACGAAAGGTTTGCGGAGACAAAATGTGGAACCATGACGGT
GGTCGTGATCAAGTCCCAGCGCGGGAGCACGAAGCTACGGCTTGCGTGGA
GCAACCACGGGGATCTGAATGCCACTCAGGCCACGGTGTACACGGAGAGG
GAGTGGAAAAAAACGAGCTACGCAGGCAAGACGAGGAATCTGCCGGACGG
ATTCGCCGATGTAGACATGCCCCTCGACAGAAATCTCGTCTTTGTATCGT
AG
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