mRNA_H-paniculata_contig49945.12208.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49945.12208.1
Unique NamemRNA_H-paniculata_contig49945.12208.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: D1J7D7_ECTSI (Multifunctional fusion protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=D1J7D7_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 6.590e-90
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL+DDQIK QVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIK+NAFDASIGTESCVMSFIVQRPI EPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY
Sbjct:   12 PDLSDDQIKQQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: RBS_ECTSI (Ribulose bisphosphate carboxylase small subunit n=136 Tax=Phaeophyceae TaxID=2870 RepID=RBS_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 1.550e-88
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL+DDQIK QV+YAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIK+NAFDASIGTESCVMSFIVQRPI EPGFYLERNE+ GRNIQYTISSYAVQARPSGDRY
Sbjct:   12 PDLSDDQIKQQVSYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRPITEPGFYLERNEIHGRNIQYTISSYAVQARPSGDRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: A0A0S0GBG1_COSCS (Multifunctional fusion protein n=33 Tax=Phaeophyceae TaxID=2870 RepID=A0A0S0GBG1_COSCS)

HSP 1 Score: 251 bits (641), Expect = 2.900e-84
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL D+QIK QVAYAM+KGWAVSVEWTDDPHPRN+YWELWGLPLFD++DPAA+MYEL ECRKVNPEGYIK+NAFDASIGTESCV+SFIVQRP NEPGFYLERNE+ GRNIQYTISSYAVQARP+GDRY
Sbjct:   12 PDLTDEQIKKQVAYAMTKGWAVSVEWTDDPHPRNAYWELWGLPLFDIQDPAALMYELGECRKVNPEGYIKINAFDASIGTESCVLSFIVQRPSNEPGFYLERNEIGGRNIQYTISSYAVQARPAGDRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: A0A0R6LUN5_UNDPI (Multifunctional fusion protein n=44 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN5_UNDPI)

HSP 1 Score: 250 bits (639), Expect = 5.850e-84
Identity = 114/128 (89.06%), Postives = 122/128 (95.31%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL D+QIK QVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFD++D AA+MYELAECRKVNPEGYIK+NAFDASIGTESC +SF+VQRP NEPGFYLERNEV GRNIQYTISSYAVQARP+GDRY
Sbjct:   12 PDLTDEQIKKQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDIQDAAALMYELAECRKVNPEGYIKINAFDASIGTESCALSFLVQRPANEPGFYLERNEVGGRNIQYTISSYAVQARPAGDRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: A0A2I4Q2E0_9PHAE (Multifunctional fusion protein n=11 Tax=Dictyopteris TaxID=112054 RepID=A0A2I4Q2E0_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 6.300e-79
Identity = 106/128 (82.81%), Postives = 119/128 (92.97%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL D+QIK QV YA++K WAVSVEWTDDPHPRNSYWELWGLPLFD+KDPAA++YEL +CR+VNPEGYIK+NAFDA+ GTESCV+SFIVQRP  EPGFYLERNE+ GRNIQYTISSYAVQARP+GDRY
Sbjct:   12 PDLTDEQIKKQVEYAITKEWAVSVEWTDDPHPRNSYWELWGLPLFDIKDPAALLYELNQCRRVNPEGYIKVNAFDANRGTESCVLSFIVQRPTEEPGFYLERNEIHGRNIQYTISSYAVQARPAGDRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: A0A1L2F1V1_9PHAE (Multifunctional fusion protein n=208 Tax=Fucales TaxID=3009 RepID=A0A1L2F1V1_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 8.950e-79
Identity = 107/128 (83.59%), Postives = 118/128 (92.19%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL+D+QIK QV YA+SKGWAVSVEWTDDPHPRN+YWELWGLPLFD+KD AAVMYEL ECR++NPEGYIK+N +DAS GTESC +SFIVQRP  EPGFYLERNEV GRNIQYTISSYAVQARP+GDRY
Sbjct:   12 PDLSDEQIKNQVNYAISKGWAVSVEWTDDPHPRNAYWELWGLPLFDIKDSAAVMYELNECRRINPEGYIKINCYDASKGTESCALSFIVQRPAEEPGFYLERNEVGGRNIQYTISSYAVQARPAGDRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: A0A7S6ZP87_9STRA (Multifunctional fusion protein n=3 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZP87_9STRA)

HSP 1 Score: 228 bits (581), Expect = 4.090e-75
Identity = 101/128 (78.91%), Postives = 114/128 (89.06%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            P L+D+QIK Q+ YA++KGWA+SVEWTDDPHPRN+YW+LWGLPLFD+KD A VMYEL ECR+ NPEGYIKLNAFDASIGTESCVMS+IV RP +EPGFYLER E  GRNIQY ISSY+VQARP GDRY
Sbjct:   12 PSLSDEQIKKQIDYAITKGWAISVEWTDDPHPRNTYWDLWGLPLFDIKDSATVMYELNECRRANPEGYIKLNAFDASIGTESCVMSYIVTRPSDEPGFYLERTETHGRNIQYKISSYSVQARPEGDRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: E8Z964_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (Fragment) n=2 Tax=Dictyopteris repens TaxID=218863 RepID=E8Z964_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 9.920e-75
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARP 369
            PDL D+QI  QV YA+SKGWA+S+EWTDDPHPRNSYWELWGLPLFD+KD AAV+YEL +CR+VNPEGYIK+NAFDAS GTESC +SFIVQRP  EPGFYLERNE+ GRNIQYTISSYAVQARP
Sbjct:   12 PDLTDEQITSQVNYAISKGWAISIEWTDDPHPRNSYWELWGLPLFDIKDSAAVLYELNQCRRVNPEGYIKINAFDASKGTESCALSFIVQRPTEEPGFYLERNEIHGRNIQYTISSYAVQARP 134          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: Q9GGQ1_VAULI (Multifunctional fusion protein n=2 Tax=PX clade TaxID=569578 RepID=Q9GGQ1_VAULI)

HSP 1 Score: 224 bits (570), Expect = 1.940e-73
Identity = 96/128 (75.00%), Postives = 115/128 (89.84%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL+D+QIK Q+ YA++KGWA+S+EW+DDPHPRN+YWELWGLPLFD+KD +AV+YE+ ECR+VNPEGY+K+NAFDASIGTESCVMSFIVQRP  EPGFYLER EV GR+IQYTI SY+ Q +P G RY
Sbjct:   12 PDLSDEQIKKQIEYAVNKGWAISIEWSDDPHPRNTYWELWGLPLFDIKDSSAVLYEITECRRVNPEGYMKINAFDASIGTESCVMSFIVQRPNEEPGFYLERTEVAGRSIQYTIKSYSTQTKPEGFRY 139          
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Match: A0A516ZA56_9STRA (Multifunctional fusion protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516ZA56_9STRA)

HSP 1 Score: 221 bits (562), Expect = 3.220e-72
Identity = 97/128 (75.78%), Postives = 111/128 (86.72%), Query Frame = 1
Query:    1 PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYLERNEVQGRNIQYTISSYAVQARPSGDRY 384
            PDL D+QIKLQV Y +S+GW++++EWTDDPHPRN YWELWGLPLFD+KDPAAVMYELAECRK N  GYIK+N FDASIGTESCVMSFIVQRP  EPGFYL R E  GR I+YTI+SY+ Q +PSG+RY
Sbjct:   12 PDLTDEQIKLQVDYCISQGWSINIEWTDDPHPRNVYWELWGLPLFDIKDPAAVMYELAECRKANTTGYIKMNGFDASIGTESCVMSFIVQRPTYEPGFYLSRQESSGRMIRYTINSYSTQGKPSGERY 139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49945.12208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7D7_ECTSI6.590e-9096.88Multifunctional fusion protein n=10 Tax=Phaeophyce... [more]
RBS_ECTSI1.550e-8894.53Ribulose bisphosphate carboxylase small subunit n=... [more]
A0A0S0GBG1_COSCS2.900e-8488.28Multifunctional fusion protein n=33 Tax=Phaeophyce... [more]
A0A0R6LUN5_UNDPI5.850e-8489.06Multifunctional fusion protein n=44 Tax=Laminarial... [more]
A0A2I4Q2E0_9PHAE6.300e-7982.81Multifunctional fusion protein n=11 Tax=Dictyopter... [more]
A0A1L2F1V1_9PHAE8.950e-7983.59Multifunctional fusion protein n=208 Tax=Fucales T... [more]
A0A7S6ZP87_9STRA4.090e-7578.91Multifunctional fusion protein n=3 Tax=Schizocladi... [more]
E8Z964_9PHAE9.920e-7582.11Ribulose-1,5-bisphosphate carboxylase/oxygenase sm... [more]
Q9GGQ1_VAULI1.940e-7375.00Multifunctional fusion protein n=2 Tax=PX clade Ta... [more]
A0A516ZA56_9STRA3.220e-7275.78Multifunctional fusion protein n=1 Tax=Florenciell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49945contigH-paniculata_contig49945:948..1334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.0
Seed ortholog evalue1.8e-68
Seed eggNOG ortholog2880.D1J7D7
Preferred namerbcS
KEGG rclassRC00172,RC00859
KEGG koko:K01602
KEGG ReactionR00024,R03140
KEGG Pathwayko00630,ko00710,ko01100,ko01120,ko01200,map00630,map00710,map01100,map01120,map01200
KEGG ModuleM00165,M00166,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ribulose-bisphosphate carboxylase activity
EggNOG OGs2QTPB@2759,COG4451@1
EC4.1.1.39
COG Functional cat.C
BiGG ReactioniRC1080.CRv4_Au5_s2_g9202_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930469.376763-CDS-H-paniculata_contig49945:947..13341622930469.376763-CDS-H-paniculata_contig49945:947..1334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49945 948..1334 -
1691481305.5799527-CDS-H-paniculata_contig49945:947..13341691481305.5799527-CDS-H-paniculata_contig49945:947..1334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49945 948..1334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49945.12208.1prot_H-paniculata_contig49945.12208.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49945 948..1334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49945.12208.1

>prot_H-paniculata_contig49945.12208.1 ID=prot_H-paniculata_contig49945.12208.1|Name=mRNA_H-paniculata_contig49945.12208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
PDLNDDQIKLQVAYAMSKGWAVSVEWTDDPHPRNSYWELWGLPLFDVKDP
AAVMYELAECRKVNPEGYIKLNAFDASIGTESCVMSFIVQRPINEPGFYL
ERNEVQGRNIQYTISSYAVQARPSGDRY*
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mRNA from alignment at H-paniculata_contig49945:948..1334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49945.12208.1 ID=mRNA_H-paniculata_contig49945.12208.1|Name=mRNA_H-paniculata_contig49945.12208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig49945:948..1334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGATTTAAATGATGATCAAATTAAACTACAAGTAGCTTATGCTATGAG TAAAGGTTGGGCTGTTAGTGTTGAATGGACCGATGATCCACACCCACGTA ACTCATATTGGGAATTATGGGGTCTTCCTCTATTTGATGTTAAAGATCCA GCAGCAGTTATGTATGAACTTGCTGAATGTAGAAAAGTTAATCCAGAAGG TTATATTAAACTTAATGCTTTTGATGCTAGCATTGGTACAGAAAGTTGTG TAATGTCATTCATTGTACAACGTCCTATTAATGAGCCTGGTTTCTACTTA GAGCGTAATGAAGTTCAAGGTCGTAATATCCAATATACAATTTCAAGTTA TGCTGTTCAAGCACGCCCTTCAGGAGATCGTTACTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig49945:948..1334-

>mRNA_H-paniculata_contig49945.12208.1 ID=mRNA_H-paniculata_contig49945.12208.1|Name=mRNA_H-paniculata_contig49945.12208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig49945:948..1334- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGATTTAAATGATGATCAAATTAAACTACAAGTAGCTTATGCTATGAG
TAAAGGTTGGGCTGTTAGTGTTGAATGGACCGATGATCCACACCCACGTA
ACTCATATTGGGAATTATGGGGTCTTCCTCTATTTGATGTTAAAGATCCA
GCAGCAGTTATGTATGAACTTGCTGAATGTAGAAAAGTTAATCCAGAAGG
TTATATTAAACTTAATGCTTTTGATGCTAGCATTGGTACAGAAAGTTGTG
TAATGTCATTCATTGTACAACGTCCTATTAATGAGCCTGGTTTCTACTTA
GAGCGTAATGAAGTTCAAGGTCGTAATATCCAATATACAATTTCAAGTTA
TGCTGTTCAAGCACGCCCTTCAGGAGATCGTTACTAACCAGATTTAAATG
ATGATCAAATTAAACTACAAGTAGCTTATGCTATGAGTAAAGGTTGGGCT
GTTAGTGTTGAATGGACCGATGATCCACACCCACGTAACTCATATTGGGA
ATTATGGGGTCTTCCTCTATTTGATGTTAAAGATCCAGCAGCAGTTATGT
ATGAACTTGCTGAATGTAGAAAAGTTAATCCAGAAGGTTATATTAAACTT
AATGCTTTTGATGCTAGCATTGGTACAGAAAGTTGTGTAATGTCATTCAT
TGTACAACGTCCTATTAATGAGCCTGGTTTCTACTTAGAGCGTAATGAAG
TTCAAGGTCGTAATATCCAATATACAATTTCAAGTTATGCTGTTCAAGCA
CGCCCTTCAGGAGATCGTTACTAA
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