mRNA_H-paniculata_contig4990.12202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4990.12202.1
Unique NamemRNA_H-paniculata_contig4990.12202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4990.12202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4990contigH-paniculata_contig4990:326..1907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4990.12202.1prot_H-paniculata_contig4990.12202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4990 329..1897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930468.444709-UTR-H-paniculata_contig4990:325..3281622930468.444709-UTR-H-paniculata_contig4990:325..328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4990 326..328 +
1691481305.1340907-UTR-H-paniculata_contig4990:325..3281691481305.1340907-UTR-H-paniculata_contig4990:325..328Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4990 326..328 +
1622930468.492884-UTR-H-paniculata_contig4990:1897..19071622930468.492884-UTR-H-paniculata_contig4990:1897..1907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4990 1898..1907 +
1691481305.158588-UTR-H-paniculata_contig4990:1897..19071691481305.158588-UTR-H-paniculata_contig4990:1897..1907Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4990 1898..1907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930468.4614272-CDS-H-paniculata_contig4990:328..4301622930468.4614272-CDS-H-paniculata_contig4990:328..430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4990 329..430 +
1691481305.1424031-CDS-H-paniculata_contig4990:328..4301691481305.1424031-CDS-H-paniculata_contig4990:328..430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4990 329..430 +
1622930468.4768934-CDS-H-paniculata_contig4990:1792..18971622930468.4768934-CDS-H-paniculata_contig4990:1792..1897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4990 1793..1897 +
1691481305.1506085-CDS-H-paniculata_contig4990:1792..18971691481305.1506085-CDS-H-paniculata_contig4990:1792..1897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4990 1793..1897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4990.12202.1

>prot_H-paniculata_contig4990.12202.1 ID=prot_H-paniculata_contig4990.12202.1|Name=mRNA_H-paniculata_contig4990.12202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MSDDEGEEPSKAMSGGMLVESVEAEDMDLSHGDKVAEAMHEEIADLSKLV
SQLSEDFRQLVRQVSEQQ*
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mRNA from alignment at H-paniculata_contig4990:326..1907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4990.12202.1 ID=mRNA_H-paniculata_contig4990.12202.1|Name=mRNA_H-paniculata_contig4990.12202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1582bp|location=Sequence derived from alignment at H-paniculata_contig4990:326..1907+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGAGCGATGACGAAGGCGAAGAACCAAGCAAGGCGATGAGCGGTGG
CATGTTGGTGGAGAGCGTGGAGGCAGAAGACATGGACTTGTCACATGGAG
ACAAGGTACGTATTTCATACAGCGTGCAACACAGGGAGTCACAGGACCGT
GGAGACGGTATACGACAGCCCTTGATAAAGAAACACTTTACTCCCCGGAC
AAATACGAATAGTTGCAAATGGTTCAATAAAAACTGGAAGTATTCGCCTG
AGCTTCAGAATGAGCGGGCACATAGGAAAAAATATTTACCCCTGTCCATT
TGATTTACGAGTATTATTAGCAGTCGTGGATGGTCCGGGGCACATAGAAT
ACACGAGCTTATTCTGAAACTCAGGCGAATACTTCAAGTTCTTTTTTGTC
AAAACCTTTGAGAGTATTCGTGTTTGTCGGCGGGGTGAAACACTTGTTTA
GGGTGGGCCTCGTGGATTTTTTTTACTCAGCTTCACAGCTTACAGCTTCG
CCCAAGAATAAGAACTTTGAACTTTGTATGTACAATCGTCGTATCATATA
CGGGAATTATTATGGGGGCATGATTTGAGCAGAGTTTCTCGAGCAATTTT
TTTACAGGAAACTAGAAAATAGATGGAGCCTGTATTTCTTGACAAGCGAT
CACTGAAGTTAAGTTATGCCGTGTACTGTTGTAATAGCTACCAACGACTG
ACTCGTGCGGAAACGCGTGCGGTGACTTCGCAATGTTGAAATCGACTTCG
CATTCACCTGTGCTTTGCTTTTTGGCACCTAGATTTACCTAGAGTCTTGT
ACCGTGGTCGAGCGTTTCCTCGAGATGATGTACAGTGAAGGAGCTACTGG
CTCATCGTGCGCGATAAAGAAAACCACGACGTGGTGCGGCCCTCCTTCCT
TCGGCGAAAGACAGGCCACGGACACTAGAGAGAGCTAACATGACTCCTGA
ACGGCGTGAACAAAGTGCACGACCCCGGCGTATCGAATATTTTTCCGGCT
GGCACCTTTAGTCTGTAAATTATACCTGTAAGCTCTGTCTATTTTTCTTC
GGAGAAAGTTTCATCCACTCAGAAGCTTCCGAATTTTTCCTCCAAGTTTG
TTTTCGTAAAAATATACTTCCAAAAAGAGGGACGTCATCCGTGGGCAAAA
TGAAACCCGCTCCAGAAGCCATTGTTATGGTCGTGGGTATCGTCACCCGT
CGGTCGTGTTTCTTTGGCCAATCAGATGACCAATATTCAGAAAATTTGAC
CGAACAGGAAAATTTTCACCTGTGATAATAGATTGTGCACAGGTCTACGG
TAGCACAGCCTGATGCATACTCGTAAGTATACAAGTCTAAGGTGCCTTCG
GCTAGCTGCTGTCTTGAGACGGAGTGATCTATGTATGAAAAAAAACAAAA
AAACACGCTGGGGTAGCGAAAAAAGAGATACTCACCCTTCTACACGACCC
GCGATCGCGGTACACAGGTAGCCGAGGCGATGCACGAGGAGATAGCAGAC
CTATCGAAGCTCGTCTCCCAGCTTTCGGAGGACTTCCGGCAACTCGTCCG
TCAAGTCTCGGAGCAACAGTAACCGATTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4990:326..1907+

>mRNA_H-paniculata_contig4990.12202.1 ID=mRNA_H-paniculata_contig4990.12202.1|Name=mRNA_H-paniculata_contig4990.12202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig4990:326..1907+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGATGACGAAGGCGAAGAACCAAGCAAGGCGATGAGCGGTGGCAT
GTTGGTGGAGAGCGTGGAGGCAGAAGACATGGACTTGTCACATGGAGACA
AGATGAGCGATGACGAAGGCGAAGAACCAAGCAAGGCGATGAGCGGTGGC
ATGTTGGTGGAGAGCGTGGAGGCAGAAGACATGGACTTGTCACATGGAGA
CAAGGTAGCCGAGGCGATGCACGAGGAGATAGCAGACCTATCGAAGCTCG
TCTCCCAGCTTTCGGAGGACTTCCGGCAACTCGTCCGTCAAGTCTCGGAG
CAACAGTAAGTAGCCGAGGCGATGCACGAGGAGATAGCAGACCTATCGAA
GCTCGTCTCCCAGCTTTCGGAGGACTTCCGGCAACTCGTCCGTCAAGTCT
CGGAGCAACAGTAA
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