mRNA_H-paniculata_contig49892.12200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49892.12200.1
Unique NamemRNA_H-paniculata_contig49892.12200.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 57.4 bits (137), Expect = 2.370e-7
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    7 EIWICDNGATKHMTHNSDFLFSYQEC-DGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLG 240
            ++WI D+GA++HMTH S+++ + Q   D HV L DG +  + G G + +Q     + +   L  V ++P LN +L S+G
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
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BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 7.500e-6
Identity = 28/86 (32.56%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:    7 EIWICDNGATKHMTHNSDFLFSYQECDGHVRLADGNRLPIKGVGMLLLQFR-CGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGH 261
            +IWI DNG+++H+ +++ +L   +ECD      +G  L I   G + L+   CG E V+ +L+ V F   + H+L+S G+    G+
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVV-RLSNVYFAKNVVHNLISYGQLDKVGY 376
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BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH)

HSP 1 Score: 53.1 bits (126), Expect = 7.730e-6
Identity = 28/95 (29.47%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:   13 WICDNGATKHMTHNSDFLFSYQE-CDGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEYRCSREGLRI 294
            W+ D G + HMT+  ++     E   G VR+ +     ++G+G + ++   G  V   +LT V +IP ++ +LLSLG F   G+ ++     L I
Sbjct:  287 WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVV---RLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSI 378
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BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: A0A445G8E4_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445G8E4_GLYSO)

HSP 1 Score: 50.8 bits (120), Expect = 5.020e-5
Identity = 24/93 (25.81%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:   13 WICDNGATKHMTHNSDFLFSYQEC-DGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEYRCSREGL 288
            W  D GA+ HM  +        E   G V   D +++P+KG+G +L++ + GS   +   + V ++P + + +LSLG+  +  ++       L
Sbjct:  315 WYLDTGASNHMCGDQSMFMEINEAATGDVSFGDDSKIPVKGIGKILIRLKNGSHQFI---SNVYYVPNMKNIILSLGQLLEKDYDIHLKEHSL 404
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BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: UPI000BBE966B (uncharacterized protein LOC106448712 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE966B)

HSP 1 Score: 50.4 bits (119), Expect = 6.740e-5
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMTHNSDFLFSYQECDGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEY 267
            G++  I D+GA+ HM  +   + + +   GHV +A+G+R+PI+GVG L L F   S+ +        ++P    +LLS+ K +D G EY
Sbjct:  410 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 488
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BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Match: UPI000BBECC90 (uncharacterized protein LOC106373021 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBECC90)

HSP 1 Score: 50.4 bits (119), Expect = 6.770e-5
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 GMEIWICDNGATKHMTHNSDFLFSYQECDGHVRLADGNRLPIKGVGMLLLQFRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEY 267
            G++  I D+GA+ HM  +   + + +   GHV +A+G+R+PI+GVG L L F   S+ +        ++P    +LLS+ K +D G EY
Sbjct:  409 GIKPLIIDSGASHHMISDDSLIKNIEPAHGHVMIANGDRIPIRGVGDLKL-FNKDSKAL--------YMPEFTSNLLSV-KRSDNGGEY 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49892.12200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME2.370e-735.44Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
A0A225WMA1_9STRA7.500e-632.56CCHC-type domain-containing protein (Fragment) n=1... [more]
Q9SJT2_ARATH7.730e-629.47Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
A0A445G8E4_GLYSO5.020e-525.81Retrovirus-related Pol polyprotein from transposon... [more]
UPI000BBE966B6.740e-534.83uncharacterized protein LOC106448712 n=1 Tax=Brass... [more]
UPI000BBECC906.770e-534.83uncharacterized protein LOC106373021 n=1 Tax=Brass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49892contigH-paniculata_contig49892:103..420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score65.1
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog3712.Bo3g019830.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930468.27057-CDS-H-paniculata_contig49892:102..4171622930468.27057-CDS-H-paniculata_contig49892:102..417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49892 103..417 -
1691481305.0467646-CDS-H-paniculata_contig49892:102..4171691481305.0467646-CDS-H-paniculata_contig49892:102..417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49892 103..417 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930468.2863-UTR-H-paniculata_contig49892:417..4201622930468.2863-UTR-H-paniculata_contig49892:417..420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49892 418..420 -
1691481305.0616028-UTR-H-paniculata_contig49892:417..4201691481305.0616028-UTR-H-paniculata_contig49892:417..420Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig49892 418..420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49892.12200.1prot_H-paniculata_contig49892.12200.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49892 103..417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49892.12200.1

>prot_H-paniculata_contig49892.12200.1 ID=prot_H-paniculata_contig49892.12200.1|Name=mRNA_H-paniculata_contig49892.12200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MEIWICDNGATKHMTHNSDFLFSYQECDGHVRLADGNRLPIKGVGMLLLQ
FRCGSEVVLMKLTQVAFIPLLNHHLLSLGKFADFGHEYRCSREGLRINRK
TGRVL
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mRNA from alignment at H-paniculata_contig49892:103..420-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49892.12200.1 ID=mRNA_H-paniculata_contig49892.12200.1|Name=mRNA_H-paniculata_contig49892.12200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig49892:103..420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCA
TAATTCAGATTTTCTTTTTAGTTACCAGGAATGTGATGGGCATGTGCGCC
TTGCAGATGGTAACCGTCTCCCGATCAAAGGAGTTGGCATGCTGCTCCTT
CAATTTCGATGTGGCTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGC
GTTCATACCACTCCTCAATCATCACCTTCTATCTCTCGGGAAATTCGCGG
ACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCGT
AAAACAGGGAGAGTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig49892:103..420-

>mRNA_H-paniculata_contig49892.12200.1 ID=mRNA_H-paniculata_contig49892.12200.1|Name=mRNA_H-paniculata_contig49892.12200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig49892:103..420- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATTTGTGATAATGGTGCAACGAAACACATGACCCATAA
TTCAGATTTTCTTTTTAGTTACCAGGAATGTGATGGGCATGTGCGCCTTG
CAGATGGTAACCGTCTCCCGATCAAAGGAGTTGGCATGCTGCTCCTTCAA
TTTCGATGTGGCTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTT
CATACCACTCCTCAATCATCACCTTCTATCTCTCGGGAAATTCGCGGACT
TTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCGTAAA
ACAGGGAGAGTTCTGATGGAGATCTGGATTTGTGATAATGGTGCAACGAA
ACACATGACCCATAATTCAGATTTTCTTTTTAGTTACCAGGAATGTGATG
GGCATGTGCGCCTTGCAGATGGTAACCGTCTCCCGATCAAAGGAGTTGGC
ATGCTGCTCCTTCAATTTCGATGTGGCTCCGAGGTTGTTTTGATGAAGTT
AACTCAGGTTGCGTTCATACCACTCCTCAATCATCACCTTCTATCTCTCG
GGAAATTCGCGGACTTTGGTCATGAATATAGGTGTTCGCGCGAAGGGCTC
AGAATTAACCGTAAAACAGGGAGAGTTCTG
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