mRNA_H-paniculata_contig4986.12195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: A0A6H5KS07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS07_9PHAE) HSP 1 Score: 145 bits (366), Expect = 2.010e-37 Identity = 81/159 (50.94%), Postives = 106/159 (66.67%), Query Frame = 1
Query: 1 MSPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMSEHPDLKLSKEEGLLNFAFGPSFHSNSRFYVSFTVKGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALS----HDLYWGQGDSGNQEDPDNHGQNAMDMH 465
M+PD S WW+ G+ G+IVE+ D K V+DMS + + EEGLL+ AF P+FH+ FY S+ V G + G NRLSRF YD SAA TLASEEIL+ S+E+ S VH+AGW+GFKPSSY + A+S H+L+W GDSG Q D + GQ+ +H
Sbjct: 93 MTPDGSKWWILGLKGQIVEVDVADATWAKTVLDMSSL--VLWTFEEGLLSMAFSPAFHTTGVFYASY-VNGPSFGTNRLSRFKYDPDSAANTLASEEILITSSEKKSNVHSAGWIGFKPSSYGNDAVSAGAVHELFWAMGDSGPQLDTSDRGQDPNILH 248
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI) HSP 1 Score: 139 bits (350), Expect = 2.910e-35 Identity = 77/157 (49.04%), Postives = 103/157 (65.61%), Query Frame = 1
Query: 1 MSPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMSEHPDLKLSKEEGLLNFAFGPSFHSNSRFYVSFTVKGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALS--HDLYWGQGDSGNQEDPDNHGQNAMDMH 465
M+PD S WW+ G+ G+IVE+ D + K V+DMS + + EEGLL+ AF P+FH+ FY S+ V G + G NRLSRF YD SA TL SEE+L+ S+E+ S VH+AGW+GFKPSSY + A H+L+W GDSG Q D + GQ+ +H
Sbjct: 180 MTPDGSKWWILGLKGQIVEVDVADPTSAKTVLDMSSL--ILWTFEEGLLSMAFSPAFHTTGVFYASY-VNGPSFGTNRLSRFKYDPNSAENTLGSEEVLIISSEKQSNVHSAGWIGFKPSSYGNDAAGAVHELFWAMGDSGPQLDTFDRGQDPNILH 333
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: D7FJP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP1_ECTSI) HSP 1 Score: 129 bits (325), Expect = 6.670e-32 Identity = 75/159 (47.17%), Postives = 96/159 (60.38%), Query Frame = 1
Query: 1 MSPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMSEHPDLKLSKEEGLLNFAFGPSFHSNSRFYVSFTVKG---GAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYS-SALSHDLYWGQGDSGNQEDPDNHGQNAMDMH 465
M+PD S WW+ G+ G I ++ D V+D+S+ D S E+GLL FAF PSF FYVS++V G G NRLS+F Y G AT SEEILL STE+ S+VH++GW+GF PSSY HD+YW GD G Q DPDN Q+ ++H
Sbjct: 192 MTPDGSAWWIGGMTGYIKMAASQDPTDAIDVLDISDRADF--SYEQGLLGFAFSPSFTETGLFYVSYSVAGVMNPENGLNRLSKFVYYAGDVVATSGSEEILLTSTEKGSSVHSSGWVGFAPSSYADPEGAYHDIYWTVGDGGPQNDPDNKAQDMTNLH 348
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.520e-29 Identity = 74/162 (45.68%), Postives = 95/162 (58.64%), Query Frame = 1
Query: 4 SPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMS----EHPDLKLSKEEGLLNFAFGPSFHSNSR---FYVSFTV--KGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALSHDLYWGQGDSGNQEDPDNHGQNAMDM 462
+PD S WW+ GI G+I +++ + +LV+ ++ + EEGLL+ AFGP F NS FYVS+TV G NRL+RF Y G AAAT ASEE+LL + R +VH AGWLGFKPS+Y + DLYW GD G Q DP NH Q+ M
Sbjct: 110 TPDGSQWWLLGISGQIYAVNSDSMDESELVIHVAGPVPSGGSFYVDFEEGLLDVAFGPMFGDNSYPQYFYVSYTVLLDDGENQRNRLARFTYVPGDAAATRASEEVLLTTVPRFISVHAAGWLGFKPSAYGNPGYQ-DLYWTTGDGGPQTDPFNHSQDETTM 270
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.220e-27 Identity = 70/161 (43.48%), Postives = 96/161 (59.63%), Query Frame = 1
Query: 4 SPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMSEHPD---LKLSKEEGLLNFAFGPSFHSN---SRFYVSFTV--KGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALSHDLYWGQGDSGNQEDPDNHGQNAMDM 462
+PD S WW+ GI GEI + + ++ +LV+D+S + EEGLL+ AFGP F + + FYVS+TV NRL+RF Y G T ASEE+LL + + +++H+AGWLGFKPS Y +S+ DLYW GD G Q DP+NH Q+ M
Sbjct: 183 TPDGSQWWLLGIAGEIYAVDSDNMDDSELVIDVSGSVTGGTFYVDYEEGLLDVAFGPMFSESGYPNYFYVSYTVDLNDDLMQRNRLARFTYIPGDPEGTKASEEVLLTTVPKYNSIHSAGWLGFKPSVYGNSSPQ-DLYWTTGDGGPQTDPENHSQDTQTM 342
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: D7G957_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G957_ECTSI) HSP 1 Score: 115 bits (287), Expect = 8.370e-27 Identity = 71/162 (43.83%), Postives = 94/162 (58.02%), Query Frame = 1
Query: 4 SPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMS----EHPDLKLSKEEGLLNFAFGPSFHSNSR---FYVSFTV--KGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALSHDLYWGQGDSGNQEDPDNHGQNAMDM 462
+PD S WW+ GI G+I + + + +LV+D+S + EEGLL+ AFGP F NS FYVS+TV G NRL++F Y AT ASEE+LL + + +++H+AGWLGFKPS Y + S DLYW GD G Q DP NH Q+ M
Sbjct: 136 TPDGSQWWLLGISGQIYAVDSDSMDESELVIDVSGPVPSGGNFYDDFEEGLLDVAFGPMFGDNSYPQYFYVSYTVLLDDGEMQRNRLAKFTYFPEDPVATRASEEVLLTTVPKYNSIHSAGWLGFKPSDYGNPGYS-DLYWTTGDGGPQTDPFNHSQDETTM 296
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: D7G960_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G960_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.040e-22 Identity = 62/112 (55.36%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 133 EEGLLNFAFGPSFHSNSR---FYVSFTV--KGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALSHDLYWGQGDSGNQEDPDNHGQNA 453
EEGLL+ AFGP F NS FYVS+TV G NRL+RF Y G AAAT ASEE+LL + + ++VH+AGWLGFKPS+Y S DLYW GD G Q DP NH Q+
Sbjct: 84 EEGLLDVAFGPMFGDNSYPQYFYVSYTVLLDDGENQRNRLARFTYVPGDAAATRASEEVLLTTVPKYNSVHSAGWLGFKPSAYGSPGYQ-DLYWTTGDGGPQTDPFNHSQDG 194
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.900e-21 Identity = 62/144 (43.06%), Postives = 85/144 (59.03%), Query Frame = 1
Query: 55 EISAGDLRTRKLVMDMS---EHPDLKLSKEEGLLNFAFGPSFHSN---SRFYVSFTV--KGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALSHDLYWGQGDSGNQEDPDNHGQNAMDM 462
++ + ++ LV+D+S + EEGLL+ AFGP F + + FYVS+TV G NRL+RF Y G A T ASEE+LL S +++++H+AGWLGFKPS Y +A DLYW GD G Q D +NH Q+ M
Sbjct: 137 QVDSDNMDDSSLVIDVSGSVTDGTFYVDYEEGLLDVAFGPMFSESDYPNYFYVSYTVDLNDGEVQRNRLARFTYIPGDPAGTKASEEVLLTSAPKSTSIHSAGWLGFKPS-VYGNASPQDLYWTTGDGGPQTDYNNHAQDTQSM 279
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: D7G961_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G961_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 4.210e-15 Identity = 52/131 (39.69%), Postives = 68/131 (51.91%), Query Frame = 1
Query: 4 SPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMSEHPDLKLSKEEGLLNFAFGPSFHSNSR---FYVSFTV--KGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSAL 381
+PD S WW+ GI G+I GLL+ AFGP F +S FYVS+TV G NRL+RF Y G AT A+EE+LL + + ++VH+AGWLGFKPS Y S+ +
Sbjct: 188 TPDGSQWWLLGISGQIYA---------------------------GLLDLAFGPMFGDDSYPQYFYVSYTVLLDDGENQRNRLARFTYVPGDPVATRATEEVLLTTVPKYNSVHSAGWLGFKPSVYGSAEI 291
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 2.400e-12 Identity = 49/115 (42.61%), Postives = 62/115 (53.91%), Query Frame = 1
Query: 133 EEGLLNFAFGPSFHSNSR---FYVSFTV--KGGAGGHNRLSRFDYDYGSAAATLASEEILLESTERTSTVHTAGWLGFKPSSYYSSALSHDLYWGQGDSGNQEDPDNHGQNAMDM 462
EEGLL+ FGP F S FYVS+TV G NRL+RF Y G AT A+EE+LL + + +++H+AGWLGFKPS Y S+ DP NH Q+ M
Sbjct: 123 EEGLLDVVFGPMFSVPSYPSYFYVSYTVLLDDGEMQRNRLARFTYVPGDPVATRATEEVLLTTVPKYNSIHSAGWLGFKPSDYGST-----------------DPGNHSQDETTM 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4986.12195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4986.12195.1 >prot_H-paniculata_contig4986.12195.1 ID=prot_H-paniculata_contig4986.12195.1|Name=mRNA_H-paniculata_contig4986.12195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=155bp MSPDKSVWWVCGIGGEIVEISAGDLRTRKLVMDMSEHPDLKLSKEEGLLNback to top mRNA from alignment at H-paniculata_contig4986:11990..14023- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4986.12195.1 ID=mRNA_H-paniculata_contig4986.12195.1|Name=mRNA_H-paniculata_contig4986.12195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2034bp|location=Sequence derived from alignment at H-paniculata_contig4986:11990..14023- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4986:11990..14023- >mRNA_H-paniculata_contig4986.12195.1 ID=mRNA_H-paniculata_contig4986.12195.1|Name=mRNA_H-paniculata_contig4986.12195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at H-paniculata_contig4986:11990..14023- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |