mRNA_H-paniculata_contig49849.12192.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49849.12192.1
Unique NamemRNA_H-paniculata_contig49849.12192.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.120e-20
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVPQYLRRKLKKMRLDASTRAALKAKYNIV 348
            V++IV G  +++HV R+R YAD+ L V  D++ VF  +  QGE ++  IL+I  + D  G Y+V V W G   +E +W+P++ I++D PQ+L+++L+KM+L    +  +K +Y IV
Sbjct:   56 VQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGIV 170          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.040e-19
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVPQYLRRKLKKMRLDASTRAALKAKYNIV 348
            V++IV G  +++HV R+R YAD+ L V  D++ VF  +  QGE ++  IL+I  + D  G Y+V V W G   +E +W+P++ I++D PQ+L+++L+KM+L    +  +K +Y IV
Sbjct: 1534 VQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEVKDNIKKEYGIV 1648          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.170e-18
Identity = 45/116 (38.79%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVPQYLRRKLKKMRLDASTRAALKAKYNIV 348
            V++IV G  +++HV R+R YAD+ L V  D++ VF  +  QGE ++  IL+I  + D  G Y+V V W G   +E +W+P++ I++D PQ+L+++L+KM+L    +  +K  Y IV
Sbjct:  311 VQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSG-YLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKLSKEIKDNIKKDYGIV 425          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.460e-18
Identity = 44/117 (37.61%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVPQYLRRKLKKMRLDASTRAALKAKYNIVM 351
            V++IV+G  +++HV R+R YADA+L +  +++ VF  A  QGEF+++ I+D+S + D  G + V VEW+G   EE +WE ++ + +  PQ+++ +L+++ L    RA LK +Y I +
Sbjct: 1613 VQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG-FDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRLGLQKKVRAQLKQQYGIAL 1728          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A2P4XSG7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSG7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.990e-10
Identity = 36/105 (34.29%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVPQYLRRKLKKMRLDAST 315
            +E+++TG ++E+H  R++ YAD+SL V +D+    A   H  E  + D L  +    ++ ++ + V W GL   E SWEP AV+ +DVP  ++  +K  R D S+
Sbjct:  363 IENLITGERREVHASRLKFYADSSLEVTEDLLRHVA---HNSEGHVVDSLLAARYNAQEKRHELKVHWRGLAEAEDSWEPAAVLLQDVPVAVKAFVKAHRKDESS 464          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A6H5L994_9PHAE (Chromo domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.530e-9
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   19 GAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVI 252
            G  +++HV R+R YADA+L +  ++   F  A  QG F+++ I+D+SES D  G + V VEW+G   +E  WE ++ I
Sbjct:    4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPG-FDVEVEWVGFDKDENIWEELSKI 80          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A0G4IUJ7_PLABS (Chromo domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUJ7_PLABS)

HSP 1 Score: 58.2 bits (139), Expect = 7.420e-8
Identity = 31/99 (31.31%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVPQYLRRKLKKM 297
            +ED++T  + + H  R+R YADA L +  +++        Q  F + D+LD     + + +  + V W G    E +WEP A+I EDVPQ + + ++K+
Sbjct:   75 LEDLLTARRFQAHTQRIRRYADADLNITTEIKQHLERLDQQ--FHVDDLLDCRIDRETQ-ELQIKVAWSGFDPSEATWEPAALIAEDVPQLVEQLIRKL 170          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A225W9T8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W9T8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.190e-5
Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQ-ISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVP 267
            +E +VTG   ++H  R++ YADA+L     ++ +      QG    +   ++   +P++ G++ +LV W+GL A E SWEP++ + +DVP
Sbjct:  175 IEHLVTGRVYDVHGSRLKFYADAAL---NTMEELLELVSSQGMLLGVDKFIEHRYNPER-GRWELLVSWLGLQAIEDSWEPLSTLLQDVP 260          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.490e-5
Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQ-ISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVP 267
            +E +VTG   ++H  R++ YADA+L     ++ +      QG    +   ++   +P++ G++ +LV W+GL A E SWEP++ + +DVP
Sbjct:  531 IEHLVTGRVYDVHGSRLKFYADAAL---NTMEELLELVSSQGMLLGVDKFIEHRYNPER-GRWELLVSWLGLQAIEDSWEPLSTLLQDVP 616          
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Match: A0A6A3DMZ5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DMZ5_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.730e-5
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1
Query:    1 VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDILDISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVP 267
            +E ++TGA + +H  R++ YAD+SL V +++  +   A       +         P     Y VL  W GL   E SWEP+ ++HEDVP
Sbjct:   45 IEHLLTGAIRTVHASRLKRYADSSLDVNEEI--LEHVANQDVYLTVEAFKHHRTHPTHF--YEVLTGWEGLEDIEDSWEPIKIMHEDVP 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49849.12192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE1.120e-2038.79Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L7F6_9PHAE7.040e-1938.79Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE1.170e-1838.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE8.460e-1837.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4XSG7_9STRA6.990e-1034.29Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6H5L994_9PHAE3.530e-939.74Chromo domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A0G4IUJ7_PLABS7.420e-831.31Chromo domain-containing protein n=1 Tax=Plasmodio... [more]
A0A225W9T8_9STRA1.190e-532.22Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A225VA87_9STRA1.490e-532.22Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3DMZ5_9STRA2.730e-533.71Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49849contigH-paniculata_contig49849:972..1325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog157072.XP_008866739.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2D33R@1,2SQ4I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930467.124205-CDS-H-paniculata_contig49849:971..13251622930467.124205-CDS-H-paniculata_contig49849:971..1325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49849 972..1325 -
1691481304.5504577-CDS-H-paniculata_contig49849:971..13251691481304.5504577-CDS-H-paniculata_contig49849:971..1325Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49849 972..1325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49849.12192.1prot_H-paniculata_contig49849.12192.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49849 972..1325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49849.12192.1

>prot_H-paniculata_contig49849.12192.1 ID=prot_H-paniculata_contig49849.12192.1|Name=mRNA_H-paniculata_contig49849.12192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
VEDIVTGAKKEIHVVRMRPYADASLVVGKDVQAVFAAAQHQGEFQISDIL
DISESPDKKGKYVVLVEWMGLGAEERSWEPVAVIHEDVPQYLRRKLKKMR
LDASTRAALKAKYNIVM*
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mRNA from alignment at H-paniculata_contig49849:972..1325-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49849.12192.1 ID=mRNA_H-paniculata_contig49849.12192.1|Name=mRNA_H-paniculata_contig49849.12192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig49849:972..1325- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAAGACATCGTGACGGGGGCCAAGAAGGAGATCCACGTCGTCCGGAT GCGGCCGTACGCTGACGCTTCCCTGGTCGTGGGGAAGGACGTTCAGGCCG TGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATCTCCGATATCCTC GACATCAGCGAGAGCCCTGACAAGAAGGGGAAGTACGTAGTGCTAGTGGA ATGGATGGGGCTGGGTGCTGAGGAGCGCAGCTGGGAGCCGGTGGCTGTTA TCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGAAGATGCGG CTGGATGCGAGCACCCGGGCCGCCCTCAAGGCAAAGTACAACATTGTAAT GTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig49849:972..1325-

>mRNA_H-paniculata_contig49849.12192.1 ID=mRNA_H-paniculata_contig49849.12192.1|Name=mRNA_H-paniculata_contig49849.12192.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig49849:972..1325- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAAGACATCGTGACGGGGGCCAAGAAGGAGATCCACGTCGTCCGGAT
GCGGCCGTACGCTGACGCTTCCCTGGTCGTGGGGAAGGACGTTCAGGCCG
TGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATCTCCGATATCCTC
GACATCAGCGAGAGCCCTGACAAGAAGGGGAAGTACGTAGTGCTAGTGGA
ATGGATGGGGCTGGGTGCTGAGGAGCGCAGCTGGGAGCCGGTGGCTGTTA
TCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGAAGATGCGG
CTGGATGCGAGCACCCGGGCCGCCCTCAAGGCAAAGTACAACATTGTAAT
GTAAGTGGAAGACATCGTGACGGGGGCCAAGAAGGAGATCCACGTCGTCC
GGATGCGGCCGTACGCTGACGCTTCCCTGGTCGTGGGGAAGGACGTTCAG
GCCGTGTTCGCTGCGGCGCAACACCAAGGAGAGTTCCAGATCTCCGATAT
CCTCGACATCAGCGAGAGCCCTGACAAGAAGGGGAAGTACGTAGTGCTAG
TGGAATGGATGGGGCTGGGTGCTGAGGAGCGCAGCTGGGAGCCGGTGGCT
GTTATCCACGAGGACGTGCCGCAGTACCTGAGGCGCAAGCTGAAGAAGAT
GCGGCTGGATGCGAGCACCCGGGCCGCCCTCAAGGCAAAGTACAACATTG
TAATGTAA
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