prot_H-paniculata_contig49813.12188.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig49813.12188.1
Unique Nameprot_H-paniculata_contig49813.12188.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length52
Homology
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: D8LL81_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL81_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.050e-24
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 51
            VEE CPKCGH KMEFYTMQLRSADEGQTVFYECLSK CKHKY++NN
Sbjct:   70 VEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKYAVNN 115          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A836CG05_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG05_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.940e-22
Identity = 37/46 (80.43%), Postives = 44/46 (95.65%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 51
            V+E CPKCGH +MEFYTMQLRSADEGQTVFYECL+K+C+HK+S+NN
Sbjct:   70 VDEQCPKCGHPEMEFYTMQLRSADEGQTVFYECLNKNCQHKFSVNN 115          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A0D2MM84_9CHLO (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MM84_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 1.210e-19
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 50
            V+E CP+CGHQ MEFYTMQLRSADEGQTVFYEC   DCKHKYS N
Sbjct:   38 VDEKCPQCGHQGMEFYTMQLRSADEGQTVFYEC--PDCKHKYSTN 80          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A0H5RCQ6_9EUKA (DNA-directed RNA polymerase subunit n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RCQ6_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 7.490e-19
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 51
            V+E CP CGH ++ FYTMQ+RSADEGQTVFYECL+  CKHKYSLNN
Sbjct:   80 VQEECPSCGHPELSFYTMQMRSADEGQTVFYECLN--CKHKYSLNN 123          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A024TQD9_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TQD9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.680e-19
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 50
            VEETCPKCGH +MEFYT+QLRSADEGQTVFYEC  K C H+YS+N
Sbjct:   81 VEETCPKCGHPEMEFYTLQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A485LF44_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF44_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.110e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 50
            VEETCPKCG+ +MEFYTMQLRSADEGQTVFYEC  K C H+YS+N
Sbjct:   81 VEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A6G0WT35_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WT35_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 3.110e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN 50
            VEETCPKCG+ +MEFYTMQLRSADEGQTVFYEC  K C H+YS+N
Sbjct:   81 VEETCPKCGNPQMEFYTMQLRSADEGQTVFYEC--KKCGHRYSVN 123          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A2D4BKP7_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BKP7_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 4.180e-18
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 51
            VEETCPKCG+ +M++YTMQLRSADEGQTVFYEC  K C HK+S+NN
Sbjct:   79 VEETCPKCGNPEMDYYTMQLRSADEGQTVFYEC--KKCGHKFSVNN 122          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A484EDY4_BRELC (DNA-directed RNA polymerase subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDY4_BRELC)

HSP 1 Score: 80.1 bits (196), Expect = 4.520e-18
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 51
            VEETCPKCG+++MEFYT+QLRSADEGQTVFYEC  K C HK S+NN
Sbjct:   82 VEETCPKCGNREMEFYTLQLRSADEGQTVFYEC--KKCGHKSSVNN 125          
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Match: A0A0W8CTM2_PHYNI (DNA-directed RNA polymerase subunit n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CTM2_PHYNI)

HSP 1 Score: 79.0 bits (193), Expect = 7.080e-18
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    6 VEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLNN 51
            VEETCPKCG+ +M++YT+QLRSADEGQTVFYEC  K C HK+S+NN
Sbjct:   59 VEETCPKCGNPEMDYYTLQLRSADEGQTVFYEC--KKCGHKFSVNN 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49813.12188.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL81_ECTSI2.050e-2489.13DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CG05_9STRA1.940e-2280.43DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A0D2MM84_9CHLO1.210e-1982.22DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A0H5RCQ6_9EUKA7.490e-1976.09DNA-directed RNA polymerase subunit n=1 Tax=Spongo... [more]
A0A024TQD9_9STRA7.680e-1980.00DNA-directed RNA polymerase subunit n=2 Tax=Aphano... [more]
A0A485LF44_9STRA3.110e-1880.00DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A6G0WT35_9STRA3.110e-1880.00DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A2D4BKP7_PYTIN4.180e-1876.09DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A484EDY4_BRELC4.520e-1878.26DNA-directed RNA polymerase subunit n=1 Tax=Bremia... [more]
A0A0W8CTM2_PHYNI7.080e-1873.91DNA-directed RNA polymerase subunit n=1 Tax=Phytop... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 8..49
e-value: 8.8E-15
score: 65.1
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 9..47
e-value: 2.0E-17
score: 62.7
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 6..48
score: 13.553
NoneNo IPR availableGENE3D2.20.25.10coord: 2..49
e-value: 4.6E-20
score: 72.6
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 5..51
NoneNo IPR availablePANTHERPTHR11239:SF14DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12coord: 5..51
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 3..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49813contigH-paniculata_contig49813:873..1028 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49813.12188.1mRNA_H-paniculata_contig49813.12188.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig49813 873..1028 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig49813.12188.1 ID=prot_H-paniculata_contig49813.12188.1|Name=mRNA_H-paniculata_contig49813.12188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MFVPQVEETCPKCGHQKMEFYTMQLRSADEGQTVFYECLSKDCKHKYSLN
N*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001222Znf_TFIIS