mRNA_H-paniculata_contig4980.12186.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4980.12186.1
Unique NamemRNA_H-paniculata_contig4980.12186.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4980.12186.1 vs. uniprot
Match: A0A6H5KK33_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK33_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.490e-29
Identity = 63/119 (52.94%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:   39 GRAYGELFSAFLGALEVALPGVSVYIGLLERGGQSIHYVACTRGSTMAGKELRRGEGISFSCVGPHHVPYLIYPPRSGLIPGFANEGTYADEQLPNKLIAAKSPSFGMAEGRHRDSSQP 395
            GRAYG+L+   L ALE+ALPGVS+YIGLLE G QSI YVACTR S+MAGK+L+RGEGISFSCVGP + PY++YPPR         E +     + +    A+ P     E R   + QP
Sbjct:  640 GRAYGDLYRKVLRALEIALPGVSIYIGLLESGAQSIRYVACTRQSSMAGKQLKRGEGISFSCVGPSYAPYVVYPPRK-------REASKQGRAITSSNSQARGPPRNEEEERENATPQP 751
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BLAST of mRNA_H-paniculata_contig4980.12186.1 vs. uniprot
Match: D8LEV4_ECTSI (C2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV4_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 9.690e-29
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = -3 
Query:  168 GRAYGELFSAFLGALEVALPGVSVYIGLLERGGQSIHYVACTRGSTMAGKELRRGEGISFSCVGPHHVPYLIYPPR 395
            GRAYG+L+   L ALE+ALPGVS+Y+GLLE G QSI YV+CTR S+MAGK+L+RGEGISFSCVGP + PY++YPPR
Sbjct: 3592 GRAYGDLYRRVLRALEIALPGVSIYLGLLESGAQSIRYVSCTRQSSMAGKQLKRGEGISFSCVGPSYAPYVVYPPR 3667
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BLAST of mRNA_H-paniculata_contig4980.12186.1 vs. uniprot
Match: A0A6H5KGE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGE8_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.910e-7
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = -3 
Query:  159 ELFSAFLGALEVALPGVSVYIGLLERGGQSIHYVACTRGSTMAGKELRRGEGISFSCVGPHHVPYLIYPPRSGL 380
            E   A L  +   LPG   Y+G+L+ GG ++ Y A T  S M G+ELRRGEG+S SC+        +   R G+
Sbjct:  433 EAKEAVLTEISKVLPGCRAYVGVLQSGGHALLYEAATPNSAMKGRELRRGEGVSLSCLDDPGGEIRVIQHREGI 506
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4980.12186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KK33_9PHAE1.490e-2952.94C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LEV4_ECTSI9.690e-2971.05C2 domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KGE8_9PHAE9.910e-739.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4980contigH-paniculata_contig4980:7456..8008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size553
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4980.12186.1prot_H-paniculata_contig4980.12186.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4980 7470..7808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.224483-UTR-H-paniculata_contig4980:7455..74691622930466.224483-UTR-H-paniculata_contig4980:7455..7469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 7456..7469 +
1691481304.1474977-UTR-H-paniculata_contig4980:7455..74691691481304.1474977-UTR-H-paniculata_contig4980:7455..7469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 7456..7469 +
1622930466.2502158-UTR-H-paniculata_contig4980:7808..80081622930466.2502158-UTR-H-paniculata_contig4980:7808..8008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 7809..8008 +
1691481304.1678753-UTR-H-paniculata_contig4980:7808..80081691481304.1678753-UTR-H-paniculata_contig4980:7808..8008Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4980 7809..8008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930466.235746-CDS-H-paniculata_contig4980:7469..78081622930466.235746-CDS-H-paniculata_contig4980:7469..7808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 7470..7808 +
1691481304.1566498-CDS-H-paniculata_contig4980:7469..78081691481304.1566498-CDS-H-paniculata_contig4980:7469..7808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4980 7470..7808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4980.12186.1

>prot_H-paniculata_contig4980.12186.1 ID=prot_H-paniculata_contig4980.12186.1|Name=mRNA_H-paniculata_contig4980.12186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MQHFLRRPRLRRVPVSPLGHSERRRFRSYKLVWKLFVRVCAFVGKPRNKA
ATGWINQIRHVVRSYTRKADALTPPQLFSSHCRASRARDVVDRLPSPLQE
TDVNRHTGQSDF*
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mRNA from alignment at H-paniculata_contig4980:7456..8008+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4980.12186.1 ID=mRNA_H-paniculata_contig4980.12186.1|Name=mRNA_H-paniculata_contig4980.12186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=553bp|location=Sequence derived from alignment at H-paniculata_contig4980:7456..8008+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGATACCTGATGTATGCAGCACTTCCTTCGAAGGCCCAGGCTGCGACGA
GTCCCGGTGTCTCCCCTCGGCCATTCCGAACGAAGGCGATTTCGCAGCTA
TAAGCTTGTTTGGAAGCTGTTCGTCCGCGTATGTGCCTTCGTTGGCAAAC
CCAGGAATAAGGCCGCTACGGGGTGGATAAATCAAATAAGGCACGTGGTG
AGGTCCTACACACGAAAAGCTGATGCCCTCACCCCGCCTCAGCTCTTTTC
CAGCCATTGTCGAGCCTCGCGTGCACGCGACGTAGTGGATAGACTGCCCT
CCCCTCTCCAAGAGACCGATGTAAACCGACACACCGGGCAGAGCGACTTC
TAAAGCCCCCAGAAAAGCGCTAAATAGTTCACCGTACGCTCGCCCAGTTG
CCGTTTTCTCGTCCTCACTATCTTCTTCATCGTCCTCCCTTTCCTCATGG
TCAGTCTTTACATCTTCAGTGTTTCCCTCTCTGACTGCCGTTTCCCATCG
GCGAAGCTCGGCATCGTCTTTTGCCGCACCAGTCCCCCTCCTGCGAGCTC
GAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4980:7456..8008+

>mRNA_H-paniculata_contig4980.12186.1 ID=mRNA_H-paniculata_contig4980.12186.1|Name=mRNA_H-paniculata_contig4980.12186.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig4980:7456..8008+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCACTTCCTTCGAAGGCCCAGGCTGCGACGAGTCCCGGTGTCTCC
CCTCGGCCATTCCGAACGAAGGCGATTTCGCAGCTATAAGCTTGTTTGGA
AGCTGTTCGTCCGCGTATGTGCCTTCGTTGGCAAACCCAGGAATAAGGCC
GCTACGGGGTGGATAAATCAAATAAGGCACGTGGTGAGGTCCTACACACG
AAAAGCTGATGCCCTCACCCCGCCTCAGCTCTTTTCCAGCCATTGTCGAG
CCTCGCGTGCACGCGACGTAGTGGATAGACTGCCCTCCCCTCTCCAAGAG
ACCGATGTAAACCGACACACCGGGCAGAGCGACTTCTAAATGCAGCACTT
CCTTCGAAGGCCCAGGCTGCGACGAGTCCCGGTGTCTCCCCTCGGCCATT
CCGAACGAAGGCGATTTCGCAGCTATAAGCTTGTTTGGAAGCTGTTCGTC
CGCGTATGTGCCTTCGTTGGCAAACCCAGGAATAAGGCCGCTACGGGGTG
GATAAATCAAATAAGGCACGTGGTGAGGTCCTACACACGAAAAGCTGATG
CCCTCACCCCGCCTCAGCTCTTTTCCAGCCATTGTCGAGCCTCGCGTGCA
CGCGACGTAGTGGATAGACTGCCCTCCCCTCTCCAAGAGACCGATGTAAA
CCGACACACCGGGCAGAGCGACTTCTAA
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