mRNA_H-paniculata_contig49782.12180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49782.12180.1
Unique NamemRNA_H-paniculata_contig49782.12180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-10
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:    1 TVLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
            +VLGALFE +WD+RVPRD  GRIVLDESP C K+I++ LL
Sbjct:   92 SVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHTLL 131          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FIX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX5_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.580e-9
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 TVLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKL 117
            +  GAL  GVWD+RVPRDA GRIVLDESP C K+I++ L
Sbjct:    7 SAFGALVGGVWDKRVPRDADGRIVLDESPTCLKHIIHTL 45          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 4.860e-9
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
            LG LFE VWD R+PRD+ GRIVLDESP C K++++ L+
Sbjct:   74 LGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHSLI 111          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.650e-9
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
            LG LFE  WD+RVPRDA GRIVLDESP C K+++  LL
Sbjct:   51 LGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALL 88          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
            LG LFE VWD R+PRD+ GRIVLD+SP C K +++ L+
Sbjct:   96 LGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLI 133          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FSV1_ECTSI (Potassium channel tetramerisation domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV1_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.480e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   10 GALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
            G LF+G WD+RVPRDA G +VLDESP C ++++  LL
Sbjct:   95 GDLFKGAWDERVPRDAAGYVVLDESPACVQHLVRMLL 131          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5KTF6_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF6_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.520e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   16 LFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
            LFE +WD+R+PRDA G IVLDESP C K++L  LL
Sbjct:   70 LFESMWDKRIPRDANGLIVLDESPICVKHLLRALL 104          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FR77_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR77_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.360e-6
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKL 117
            L  LF+  WD+R+PRDA G +VLDESP CFK++++ L
Sbjct:   62 LANLFDSDWDERLPRDANGLMVLDESPVCFKHLVDAL 98          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5JHS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS2_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.360e-6
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKL 117
            L  LF+  WD+R+PRDA G +VLDESP CFK++++ L
Sbjct:   88 LANLFDSDWDERLPRDANGLMVLDESPVCFKHLVDAL 124          
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5JLT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT7_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 1.660e-5
Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1
Query:    4 VLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
            + G LFEGV D+RVPRDA G +VL ESP C +++   LL
Sbjct:  114 LFGDLFEGVRDERVPRDAAGYVVLGESPACAQHLARMLL 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7G141_ECTSI1.140e-1070.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FIX5_ECTSI2.580e-966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2H5_ECTSI4.860e-963.16TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX7_ECTSI6.650e-968.42BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L232_9PHAE8.120e-860.53TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FSV1_ECTSI1.480e-759.46Potassium channel tetramerisation domain containin... [more]
A0A6H5KTF6_9PHAE1.520e-765.71TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FR77_ECTSI1.360e-656.76TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JHS2_9PHAE1.360e-656.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLT7_9PHAE1.660e-556.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49782contigH-paniculata_contig49782:133..252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930465.6567311-CDS-H-paniculata_contig49782:132..2521622930465.6567311-CDS-H-paniculata_contig49782:132..252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49782 133..252 -
1691481303.9707854-CDS-H-paniculata_contig49782:132..2521691481303.9707854-CDS-H-paniculata_contig49782:132..252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49782 133..252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49782.12180.1prot_H-paniculata_contig49782.12180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49782 133..252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49782.12180.1

>prot_H-paniculata_contig49782.12180.1 ID=prot_H-paniculata_contig49782.12180.1|Name=mRNA_H-paniculata_contig49782.12180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
TVLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL
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mRNA from alignment at H-paniculata_contig49782:133..252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49782.12180.1 ID=mRNA_H-paniculata_contig49782.12180.1|Name=mRNA_H-paniculata_contig49782.12180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at H-paniculata_contig49782:133..252- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGTGCTTGGTGCACTATTCGAGGGGGTGTGGGATCAGCGCGTCCCCCG GGATGCCAAGGGCCGCATTGTGCTGGACGAGTCTCCCAAGTGCTTCAAGT ACATCCTGAATAAACTGCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig49782:133..252-

>mRNA_H-paniculata_contig49782.12180.1 ID=mRNA_H-paniculata_contig49782.12180.1|Name=mRNA_H-paniculata_contig49782.12180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig49782:133..252- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGTGCTTGGTGCACTATTCGAGGGGGTGTGGGATCAGCGCGTCCCCCG
GGATGCCAAGGGCCGCATTGTGCTGGACGAGTCTCCCAAGTGCTTCAAGT
ACATCCTGAATAAACTGCTTACTGTGCTTGGTGCACTATTCGAGGGGGTG
TGGGATCAGCGCGTCCCCCGGGATGCCAAGGGCCGCATTGTGCTGGACGA
GTCTCCCAAGTGCTTCAAGTACATCCTGAATAAACTGCTT
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