mRNA_H-paniculata_contig49782.12180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 1.140e-10 Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 1 TVLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
+VLGALFE +WD+RVPRD GRIVLDESP C K+I++ LL
Sbjct: 92 SVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHTLL 131
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FIX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX5_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 2.580e-9 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 1 TVLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKL 117
+ GAL GVWD+RVPRDA GRIVLDESP C K+I++ L
Sbjct: 7 SAFGALVGGVWDKRVPRDADGRIVLDESPTCLKHIIHTL 45
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI) HSP 1 Score: 58.9 bits (141), Expect = 4.860e-9 Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1
Query: 7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
LG LFE VWD R+PRD+ GRIVLDESP C K++++ L+
Sbjct: 74 LGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHSLI 111
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 6.650e-9 Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
LG LFE WD+RVPRDA GRIVLDESP C K+++ LL
Sbjct: 51 LGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALL 88
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 8.120e-8 Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1
Query: 7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
LG LFE VWD R+PRD+ GRIVLD+SP C K +++ L+
Sbjct: 96 LGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLI 133
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FSV1_ECTSI (Potassium channel tetramerisation domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV1_ECTSI) HSP 1 Score: 54.7 bits (130), Expect = 1.480e-7 Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 10 GALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
G LF+G WD+RVPRDA G +VLDESP C ++++ LL
Sbjct: 95 GDLFKGAWDERVPRDAAGYVVLDESPACVQHLVRMLL 131
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5KTF6_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF6_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 1.520e-7 Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query: 16 LFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
LFE +WD+R+PRDA G IVLDESP C K++L LL
Sbjct: 70 LFESMWDKRIPRDANGLIVLDESPICVKHLLRALL 104
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: D7FR77_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR77_ECTSI) HSP 1 Score: 52.0 bits (123), Expect = 1.360e-6 Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKL 117
L LF+ WD+R+PRDA G +VLDESP CFK++++ L
Sbjct: 62 LANLFDSDWDERLPRDANGLMVLDESPVCFKHLVDAL 98
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5JHS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS2_9PHAE) HSP 1 Score: 52.0 bits (123), Expect = 1.360e-6 Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1
Query: 7 LGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKL 117
L LF+ WD+R+PRDA G +VLDESP CFK++++ L
Sbjct: 88 LANLFDSDWDERLPRDANGLMVLDESPVCFKHLVDAL 124
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Match: A0A6H5JLT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT7_9PHAE) HSP 1 Score: 48.9 bits (115), Expect = 1.660e-5 Identity = 22/39 (56.41%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 4 VLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLL 120
+ G LFEGV D+RVPRDA G +VL ESP C +++ LL
Sbjct: 114 LFGDLFEGVRDERVPRDAAGYVVLGESPACAQHLARMLL 152 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49782.12180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig49782.12180.1 >prot_H-paniculata_contig49782.12180.1 ID=prot_H-paniculata_contig49782.12180.1|Name=mRNA_H-paniculata_contig49782.12180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp TVLGALFEGVWDQRVPRDAKGRIVLDESPKCFKYILNKLLback to top mRNA from alignment at H-paniculata_contig49782:133..252- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig49782.12180.1 ID=mRNA_H-paniculata_contig49782.12180.1|Name=mRNA_H-paniculata_contig49782.12180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at H-paniculata_contig49782:133..252- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig49782:133..252- >mRNA_H-paniculata_contig49782.12180.1 ID=mRNA_H-paniculata_contig49782.12180.1|Name=mRNA_H-paniculata_contig49782.12180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig49782:133..252- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |