mRNA_H-paniculata_contig49780.12179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig49780.12179.1
Unique NamemRNA_H-paniculata_contig49780.12179.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5KYQ2_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ2_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.610e-22
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   16 GGRVELLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIF 315
            G  + +LVDSGA+ +++D  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G + D  G+ R V  R +LVPGLG NLFSV  A   GV  +F
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 514
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BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.690e-22
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   16 GGRVELLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIF 315
            G  + +LVDSGA+ +++D  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G + D  G+ R V  R +LVPGLG NLFSV  A   GV  +F
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 514
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BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.500e-22
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   16 GGRVELLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIF 315
            G  + +LVDSGA+ +++D  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G + D  G+ R V  R +LVPGLG NLFSV  A   GV  +F
Sbjct:  415 GSSILMLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLF 514
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BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.210e-21
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 1 
Query:   16 GGRVELLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIF 315
            G  + +L+DSGA+ +++D  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G + D  G+ R V  R +LVPGLG NLFSV  A   GV  +F
Sbjct:  415 GSSILMLMDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 514
[Close]
BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.030e-21
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   16 GGRVELLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIF 315
            G  + +L DSGA+ +++D  LTPG++  ++D + L  P+PI TAG+H+++GV  G++ G + D  G+ R V  R +LVPGLG NLFSV  A   GV  +F
Sbjct:  320 GSSILMLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLF 419
[Close]
BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-15
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   31 LLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIFD 318
            LL+D+GAS + +D  L PGL+E +++ K L KP  +   G H + G A G+++  + DS GE++ V LR ++VPGLGRN+FS     + GV ++ +
Sbjct:  136 LLIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIE 231
[Close]
BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.910e-15
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   31 LLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIFD 318
            LL+D+GAS + +D  L PGL+E +++ K L KP  +   G H + G A G+++  + DS GE++ V LR I+VPGLGRN+FS     + GV ++ +
Sbjct:  394 LLIDTGASENMLDDCLIPGLKEIMREHKELAKPKVVSVRGDHELDGNATGLIHCTVKDSNGEKQAVLLRGIVVPGLGRNVFSSTAQIKNGVKLVIE 489
[Close]
BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.220e-13
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   43 SGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIFD 318
            SGAS H++D+EL P L+  L DF  +  P  I  AG   + G ++GI++    D +G  R V  +C +VPGLGR+LFS   A ++G   I  
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMS 402
[Close]
BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.440e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   34 LVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIFD 318
            LVD+GAS + +D  L PGL+E +++F  L KP  +   G H + G A G+++     + G ++ V LR ++VPGLGRN+FS     + GV ++ +
Sbjct:  333 LVDTGASENMLDDRLIPGLKETMREFNHLAKPKVVSVGGDHKLDGNATGLIHCTGKYNGGRKQAVLLRGLVVPGLGRNVFSPTAQIKNGVKLVIE 427
[Close]
BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Match: A0A6H5JV98_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV98_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.630e-12
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   31 LLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAGKHIVYGVAEGIVNGPIIDSKG----EQRHVHLRCILVPGLGRNLFSVKIAGRQGVTIIFD 318
            LL+D+GAS   ++    PGL+E + ++K L KPM +   G H V G+A G++   + DS G    E++    R ++VPGLGRN+FS     + GV +  +
Sbjct:  298 LLIDTGASEKVLNDRFIPGLKETVWEYKNLAKPMAVSVGGDHEVDGIATGLIRCIVKDSNGDSDCEKQAALQRGLVVPGLGRNVFSPTAQIQNGVKLAIE 397
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig49780.12179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KYQ2_9PHAE4.610e-2245.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5KJN3_9PHAE4.690e-2245.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE6.500e-2245.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.210e-2144.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE3.030e-2144.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD3_9PHAE1.400e-1540.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW66_9PHAE1.910e-1541.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KY84_9PHAE7.220e-1340.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSB5_9PHAE2.440e-1237.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV98_9PHAE4.630e-1237.00Peptidase A2 domain-containing protein n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig49780contigH-paniculata_contig49780:18..335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930465.620109-CDS-H-paniculata_contig49780:17..3351622930465.620109-CDS-H-paniculata_contig49780:17..335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49780 18..335 -
1691481303.9601035-CDS-H-paniculata_contig49780:17..3351691481303.9601035-CDS-H-paniculata_contig49780:17..335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig49780 18..335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig49780.12179.1prot_H-paniculata_contig49780.12179.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig49780 18..335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig49780.12179.1

>prot_H-paniculata_contig49780.12179.1 ID=prot_H-paniculata_contig49780.12179.1|Name=mRNA_H-paniculata_contig49780.12179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MEATTGGRVELLVDSGASSHFIDTELTPGLQERLQDFKPLDKPMPIETAG
KHIVYGVAEGIVNGPIIDSKGEQRHVHLRCILVPGLGRNLFSVKIAGRQG
VTIIFD
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mRNA from alignment at H-paniculata_contig49780:18..335-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig49780.12179.1 ID=mRNA_H-paniculata_contig49780.12179.1|Name=mRNA_H-paniculata_contig49780.12179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig49780:18..335- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCCACTACCGGTGGTCGGGTCGAGCTGCTGGTCGACAGCGGAGC
GAGCTCTCACTTCATCGACACCGAGCTGACGCCCGGTCTACAGGAGCGGC
TGCAAGACTTCAAGCCATTGGACAAGCCGATGCCCATCGAGACGGCTGGC
AAGCACATTGTCTACGGCGTTGCAGAGGGAATCGTCAACGGGCCCATCAT
CGATTCGAAGGGGGAGCAGCGGCACGTTCACCTGCGGTGCATACTAGTGC
CCGGCCTAGGGCGTAACCTGTTCTCCGTCAAGATAGCTGGACGACAAGGA
GTTACCATCATCTTCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig49780:18..335-

>mRNA_H-paniculata_contig49780.12179.1 ID=mRNA_H-paniculata_contig49780.12179.1|Name=mRNA_H-paniculata_contig49780.12179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig49780:18..335- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGCCACTACCGGTGGTCGGGTCGAGCTGCTGGTCGACAGCGGAGC
GAGCTCTCACTTCATCGACACCGAGCTGACGCCCGGTCTACAGGAGCGGC
TGCAAGACTTCAAGCCATTGGACAAGCCGATGCCCATCGAGACGGCTGGC
AAGCACATTGTCTACGGCGTTGCAGAGGGAATCGTCAACGGGCCCATCAT
CGATTCGAAGGGGGAGCAGCGGCACGTTCACCTGCGGTGCATACTAGTGC
CCGGCCTAGGGCGTAACCTGTTCTCCGTCAAGATAGCTGGACGACAAGGA
GTTACCATCATCTTCGACATGGAAGCCACTACCGGTGGTCGGGTCGAGCT
GCTGGTCGACAGCGGAGCGAGCTCTCACTTCATCGACACCGAGCTGACGC
CCGGTCTACAGGAGCGGCTGCAAGACTTCAAGCCATTGGACAAGCCGATG
CCCATCGAGACGGCTGGCAAGCACATTGTCTACGGCGTTGCAGAGGGAAT
CGTCAACGGGCCCATCATCGATTCGAAGGGGGAGCAGCGGCACGTTCACC
TGCGGTGCATACTAGTGCCCGGCCTAGGGCGTAACCTGTTCTCCGTCAAG
ATAGCTGGACGACAAGGAGTTACCATCATCTTCGAC
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